Lstr036677.1
Basic Information
- Insect
- Lathronympha strigana
- Gene Symbol
- -
- Assembly
- GCA_949128165.1
- Location
- OX421924.1:1074066-1080231[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0011 0.097 14.4 0.1 2 23 183 204 182 204 0.96 2 12 9.9e-05 0.0087 17.7 2.5 1 23 210 233 210 233 0.96 3 12 0.4 35 6.4 0.6 1 23 247 269 247 269 0.98 4 12 2e-05 0.0017 19.9 2.3 2 23 529 550 528 550 0.97 5 12 0.003 0.26 13.1 1.0 3 23 557 578 555 578 0.96 6 12 1.6e-05 0.0014 20.2 3.2 1 23 586 608 586 608 0.98 7 12 0.0036 0.32 12.8 5.0 2 23 612 633 611 633 0.97 8 12 0.053 4.7 9.1 0.3 2 23 646 668 645 668 0.95 9 12 5.9e-05 0.0052 18.4 5.4 1 23 674 696 674 696 0.98 10 12 0.00068 0.06 15.1 2.3 2 23 703 724 703 724 0.98 11 12 0.00033 0.029 16.1 1.5 1 23 730 753 730 753 0.97 12 12 0.00053 0.047 15.4 0.5 2 23 758 780 757 780 0.94
Sequence Information
- Coding Sequence
- ATGCCTACAGATGAGAGCCAAGGTGGTCTACCAAGTTATAGAGTGGAATTAACTACGAAAAGAGCTGTGGAACTTTTACTCGCGGGGACGCTTAAGAGTAAAGTTTGCCGCTATTGCCTAAGTGTTGCATCTCCCCTTTCTGATTTAGACCAAATAATGCAGATAGCAGGCAAAGGAGCGCTCTACAAAGTGACCATACGCGATATGGTTGCCTGTTTCCACCCTTTTAAGACCCTAAATGATCCCAACATCCCAAGAAAAATCTGCAATAAATGCCTGAATCGAGCTATCAGCGCATATCTCTTCGCACAACAGTGTGAACAGTCCGAGCGAGCTTTACGGTACTGCTTTGAGGACTTGTATGGTAAACTAGATAAGCTAGATCCTATAGATAATACTAAAAAGCGAGGAAGACGAAAGTACAACCCCAATTACAATGTGATATACACAGATCATGAAAAAGTTATAGATTATGCTGAACCAATCAGAAATATTGTAAACACGAGATGTGTGTCACTCAGTAAAGAAACCAACATGTCTGAATTAGAATGTCCGAAGTGCTGGCAAGTTTTCACCAAAATTGAAGATTTGATAGTTCATGAGAAAAGTCACCCGAGCAATGTGTGGTTTAATTGCCGTTTATGTGGCAAGTCGTTCGTCAAACGCTTGCAACTGAAACGCCACTTAAAACAAACGCATGTTTTCCCAGAAATAAAACCTGAAGAAGAAAATATACACTTCCAATGTGCTACCTGTGGTTTCGGCAGTGAAGACCACAGTGTATATTTACAGCATATTGAGAAGCATAAATTTAAATCAGTTTTACAACATTTGGTGGAGAAGAAAATGGATAAACTGTGTACGGTTTGTTTGGATAATAAACCAAAGCTTGTAGAAATGGATAAGATGGTCCGGCTTCATGGAGGATACCCAGGGGTTACTGGTGACAAGAGCCTTTACAGCATTTTGGGATCTACTTTGCCTGAAATGAATTATCCAACCAACTATATTGGGACAAAAATATGCGAAAAGTGCCTTGACAATGCTATAACTTCTTATGTGTTTATAAACCATTCCATCTACACCAGAGACCGACTCAATACGTGTGTCTCATCCATGCTAGATAACCTAAATCAAGTGAAACCAGAAGGAAATATATTCATAGAAGTAGCTAAAGAGTCTATTTTACCAATGAAAGAGCAAGATAAATTTGATGATAACCTTTTACTTGAAGAAGACGAGATAGACGAAGCTAAATTAAAAGTAGAAGTTCTTGAAGATGAATTTAGAAAACCTGATTCTGAAGAAAGTGAGTCGGAACCAGAAATAAAAGACTTTATCAATACTTTCCTCAAAGAAGAGAGTcaagatatagatatatttaatgACTTTAGCGGACTAAAAGGGAATGTCGAAATGGAAAATCCGGCAAAGAGAGTTACAAAAACGTACTCTAATAGGAAATTAGTGAATGGTTATCAATCCAAATATTCAGATGAGGATTATAATCTAGATGATGTCAGCGAATTTCTCACATtcaaaaagaagaagaaaccaAGTAAACAGTATTATAAATACAAACTGAAGTGCCCAATGTGTAGCAAGAGTTTCATAACTGATTTCCATCTTCAGAGGCACATTTTGAAGCATGTCAACAAGAAAGTTAACTGCTATATATGTAGCAAACAGTTTAAATCTAAATTCAGTATGTATGAGCATATTAAAATGGTGCATATCCTGGCTAAGTCCAATTTCTTCTCATGTAAGACTTGCGGAAGAAGTTTTAAGAGTGAagacaaattcaaaattcatcaaAAATCGCATTTGTCAAAGGAATGTCATTTGTGTGATAAGTTATTCGCGAGCCAAAGACATTTTGACAGTCACATGCAAAGACATGCTGTTAAACTGAATTTAGCCAAAAATAGCACTCTCATTTGTAGCTTCTGTGAAAAAGACTACACAAACGATAATCAGCTCTCTTTACATGTAAATAAGGTGCATTTGCAAATCAAGCCTTTCTCGTGTGATATGTGTGACCGGCAATTCTACACGGAAAGCAATTTGTGTAAACATAAAAAGACGCATAGCCTTAAATCTAAAGAAAAGTGTGAATTGTGTAAGAAGAAATTTAACACGAGGAAAGCTATGGTGATACATCTTAGAAAACATACCGGTGAGACTCCACATCGCTGTCCGCTGTGTGGAAAAGCCTTTTACTCTGAAATTAAGGCTAAACAGCATATGAGAAACTACCACGGTGGAACATTATATTGCAAGTTGTGTAAAAGTGTGTTCTCAAGCAAATATGACCTTAAATCCCATGTGATTATGGTTCATAACAATGCATTGTTATAG
- Protein Sequence
- MPTDESQGGLPSYRVELTTKRAVELLLAGTLKSKVCRYCLSVASPLSDLDQIMQIAGKGALYKVTIRDMVACFHPFKTLNDPNIPRKICNKCLNRAISAYLFAQQCEQSERALRYCFEDLYGKLDKLDPIDNTKKRGRRKYNPNYNVIYTDHEKVIDYAEPIRNIVNTRCVSLSKETNMSELECPKCWQVFTKIEDLIVHEKSHPSNVWFNCRLCGKSFVKRLQLKRHLKQTHVFPEIKPEEENIHFQCATCGFGSEDHSVYLQHIEKHKFKSVLQHLVEKKMDKLCTVCLDNKPKLVEMDKMVRLHGGYPGVTGDKSLYSILGSTLPEMNYPTNYIGTKICEKCLDNAITSYVFINHSIYTRDRLNTCVSSMLDNLNQVKPEGNIFIEVAKESILPMKEQDKFDDNLLLEEDEIDEAKLKVEVLEDEFRKPDSEESESEPEIKDFINTFLKEESQDIDIFNDFSGLKGNVEMENPAKRVTKTYSNRKLVNGYQSKYSDEDYNLDDVSEFLTFKKKKKPSKQYYKYKLKCPMCSKSFITDFHLQRHILKHVNKKVNCYICSKQFKSKFSMYEHIKMVHILAKSNFFSCKTCGRSFKSEDKFKIHQKSHLSKECHLCDKLFASQRHFDSHMQRHAVKLNLAKNSTLICSFCEKDYTNDNQLSLHVNKVHLQIKPFSCDMCDRQFYTESNLCKHKKTHSLKSKEKCELCKKKFNTRKAMVIHLRKHTGETPHRCPLCGKAFYSEIKAKQHMRNYHGGTLYCKLCKSVFSSKYDLKSHVIMVHNNALL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00412788; iTF_00411745; iTF_00409575; iTF_00410591;
- 90% Identity
- -
- 80% Identity
- -