Cfag029280.1
Basic Information
- Insect
- Cydia fagiglandana
- Gene Symbol
- -
- Assembly
- GCA_963556715.1
- Location
- OY750813.1:1172792-1182204[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0043 0.28 12.7 0.1 2 23 211 232 210 232 0.96 2 12 3.2e-05 0.002 19.5 2.5 1 23 238 260 238 260 0.97 3 12 0.038 2.4 9.8 0.5 1 23 273 295 273 295 0.98 4 12 2.8e-06 0.00018 22.8 1.7 2 23 560 581 559 581 0.97 5 12 0.0009 0.058 14.9 1.0 2 23 587 609 586 609 0.97 6 12 3e-05 0.0019 19.5 1.0 1 23 617 639 617 639 0.97 7 12 0.0024 0.15 13.6 3.4 2 23 643 664 642 664 0.97 8 12 0.19 12 7.6 0.2 3 23 678 699 676 699 0.95 9 12 5.4e-05 0.0035 18.7 1.8 1 23 705 727 705 727 0.98 10 12 0.00081 0.052 15.0 2.3 2 23 734 755 734 755 0.98 11 12 0.00025 0.016 16.6 3.2 1 23 761 784 761 784 0.97 12 12 0.00062 0.04 15.4 0.5 2 23 789 811 788 811 0.94
Sequence Information
- Coding Sequence
- ATGGATTTGGACGAGCCAAATAAACTGTTAAATCCTGAGTTATCCAATGTAAATATTCTAAATTATCAGCTAACTGAGCTAACAAAACCTAAAGCTCAGAATGACGGTGTTCTACCAAATTATAGAGTGGAATTGACTACAAAAAAAGCGGTAGAACTTTTGCTCGAAGGAACGCTTAGAAGCAAAGTTTGTCGCTATTGCTTGAGTGTGGCAACTCCTCTTTCGGATTTGGACCAAATAATGCAGATTGCAGGCAGAGGAACGCTCTACAAAGTGACTATACGCGATATGGTTGCTTGTTTTCACCCTTTTAAGACAGTGAATGATCCCAACTTCCCGAGAAAAATCTGCAATAAATGCCTAAACCGTTGCATCAGCGCATATCTCTTTACACAACAATGTGAACAGTCCGAGCGAGCTTTACGGAATTGCTTCGAAGACATGTATGCTAAACTAGAAAAACTAGACCCTctagataaaactaaaaaacggGGTAGACAGAAGCGAAACCCAAATCATAATGTCATACACACGGATCATGCAAAGGTGATAGATTATGCTGAACCAATCAGAAATATAGTAAACGTAAGATCTGTATCACTCAGTCATGAGCCGTATATGTCTGATTTGGAATGCCCTAAGTGTTGGCAAATATTTACTAAGATAGAAGACTTGATTATTCATGAGAAAAGTCATCCCAATAACATGTGGTTCAACTGCCGGCTGTGTGGGAAGTCATTTGTGAAGCGCTTGCAACTGAAACGACACTTGAAATCACATAGTGGCCCAGAAATAAAGCCTGAAGAAAAACACAATTTCCAATGTGGGACTTGTGGTTTCGGCAGTGAGGACCACAGTGCATATTTACAGCACATTGAGAAGCATAAATTTCAGTCAGTTTTACAGCATTTAGTGGAGAAGAAGATGGATAAACTGTGCACTGTCTGTTTGGATAAGAAGCCAAAGCTCGTGGAATTGGATAAAATGATCCGGCTGCATGGTGGATACCCTGGGGTTACTGGTGACAAGAGCCTTTATAGCATTTTGGGCTCCACCTTGCCTGATATGAATACTCCAACCAACTACACAGGAACAAAAATATGCGAACAGTGCCTTGACAATGCGATCACTTCCTATGTGTTCATAAATCACTCTATCTACACAAGAGAAAGACTTAATACATGCGTCTCTTCCATGCTAGATAGCCTAAACAAAGTAGAGCAACCAGAAGGCAATATGTTCATAGAGATAGCTAAAGAATCTATTCTACCAATAAAAGAGCAAGATTACTTTGATGATAATCTCCTACTTGAAGAAGATGAAGTAGATGAAACTAAATTGAAAGTAGATGTACTTGAAGATGAATTCAGAAAACCTGATACTGACGAGAGTGAATCAGAGCCTGAGATAAAAGACTATATCAATGCTTTCCTCAAAGAAGAGAGTCAAGATATAGATATATTCAAAGAACTTAGCGAAATTAAAGAAGAAAAGAATGTCGAAATAGACAATCCGGCTAAGAGAGTTACAAAGACATACACTAACAGGAAATTAGTAAATGGATATCAAGTCAAATATCCTTCAGATAATGACGAATACACTCTTGATGATGTCAGCGAATTTCTGACGttcaaaaagaaaaagaaaccaaataaacaatattataaatacaagtTGAAATGCCCAATATGCAGCAAGAGTTTCATAACTGATTACCATCTTCAAAGGCATATTTTGAAGCATGTTAATAAAAAGGTTAAATGTTATATTTGTAGCAGAGAGTTTAAATCAAAATTCTTCTTATATGAGCATATTAGAATGATACACATTCTTGATAAGGCAAAATTCTTTTCGTGTAAAACCTGCGGCAGAACTTTTGAGAATGAAGACAAATTGAAAGTGCATGAAAATTCTCATTTGTCGACACAATGCCAGTTATGTGACAAATTATTCGTCAGTCAAAGACATTTCGACAGTCATATGCAAAGACATGCTGTCAAACTTAATCTGGTGAAAAGTAGTACACAGATTTGTAGTTTCTGCGAGAAAGATTATGCAAATGATAATCAGCTCTCTCTACATGTGAATAAGGTACACTTGCAAATCAAACCCTATGCGTGCGATATGTGCGAGAGGCAATTCTATACAGAGAGCAATTTGAGTAAACATAAGAAGACTCATAATCTGAAATCTAAAGAAAAATGTGAGTTATgtaaaaagaaattcaatacAAGGAAAGCGATGGTCATACATCTTAGAAAACATACGGGAGAAACGCCGCACCGATGCCCCCTTTGCGGTAAATCGTTTTATTCTGAATTTAAAGCTAAAAACCATATGAGGAACTACCATGGCGGAACATTATATTGCAAATTGTGTAAAAGTGTGTTCTCAAGCAAATATGACCTTAAATCCCATGTCATTATGGTTCATAATAATGCGTTGTTATAG
- Protein Sequence
- MDLDEPNKLLNPELSNVNILNYQLTELTKPKAQNDGVLPNYRVELTTKKAVELLLEGTLRSKVCRYCLSVATPLSDLDQIMQIAGRGTLYKVTIRDMVACFHPFKTVNDPNFPRKICNKCLNRCISAYLFTQQCEQSERALRNCFEDMYAKLEKLDPLDKTKKRGRQKRNPNHNVIHTDHAKVIDYAEPIRNIVNVRSVSLSHEPYMSDLECPKCWQIFTKIEDLIIHEKSHPNNMWFNCRLCGKSFVKRLQLKRHLKSHSGPEIKPEEKHNFQCGTCGFGSEDHSAYLQHIEKHKFQSVLQHLVEKKMDKLCTVCLDKKPKLVELDKMIRLHGGYPGVTGDKSLYSILGSTLPDMNTPTNYTGTKICEQCLDNAITSYVFINHSIYTRERLNTCVSSMLDSLNKVEQPEGNMFIEIAKESILPIKEQDYFDDNLLLEEDEVDETKLKVDVLEDEFRKPDTDESESEPEIKDYINAFLKEESQDIDIFKELSEIKEEKNVEIDNPAKRVTKTYTNRKLVNGYQVKYPSDNDEYTLDDVSEFLTFKKKKKPNKQYYKYKLKCPICSKSFITDYHLQRHILKHVNKKVKCYICSREFKSKFFLYEHIRMIHILDKAKFFSCKTCGRTFENEDKLKVHENSHLSTQCQLCDKLFVSQRHFDSHMQRHAVKLNLVKSSTQICSFCEKDYANDNQLSLHVNKVHLQIKPYACDMCERQFYTESNLSKHKKTHNLKSKEKCELCKKKFNTRKAMVIHLRKHTGETPHRCPLCGKSFYSEFKAKNHMRNYHGGTLYCKLCKSVFSSKYDLKSHVIMVHNNALL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00871607;
- 90% Identity
- iTF_00412788;
- 80% Identity
- -