Lstr017271.1
Basic Information
- Insect
- Lathronympha strigana
- Gene Symbol
- -
- Assembly
- GCA_949128165.1
- Location
- OX421909.1:7602059-7612547[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.011 0.99 11.3 0.6 3 23 210 231 209 231 0.96 2 23 0.36 32 6.5 0.2 1 21 616 636 616 637 0.96 3 23 5.7 5e+02 2.8 0.3 1 23 678 701 678 701 0.85 4 23 0.0017 0.15 13.8 0.8 3 22 712 731 710 731 0.95 5 23 0.38 33 6.5 0.2 3 23 740 761 738 761 0.91 6 23 0.029 2.6 10.0 1.5 3 23 781 802 779 802 0.97 7 23 0.0021 0.18 13.6 0.8 1 23 808 831 808 831 0.92 8 23 0.15 13 7.7 0.0 1 23 857 880 857 880 0.90 9 23 0.023 2 10.3 3.4 1 23 885 907 885 907 0.97 10 23 0.021 1.8 10.4 0.2 1 23 913 936 913 936 0.95 11 23 0.0028 0.25 13.2 1.3 1 23 949 971 949 971 0.97 12 23 0.0018 0.15 13.8 4.0 1 23 1020 1043 1020 1043 0.96 13 23 0.0073 0.64 11.9 1.7 1 23 1116 1139 1116 1139 0.96 14 23 0.0013 0.12 14.2 2.1 2 23 1166 1188 1165 1188 0.95 15 23 0.11 9.3 8.2 0.0 3 23 1195 1216 1193 1216 0.93 16 23 0.012 1.1 11.2 0.2 1 21 1260 1280 1260 1281 0.95 17 23 0.0015 0.13 14.0 0.6 1 23 1291 1313 1291 1313 0.93 18 23 0.00014 0.012 17.3 0.3 2 23 1405 1427 1405 1427 0.93 19 23 4e-07 3.5e-05 25.3 1.4 3 23 1434 1454 1433 1454 0.98 20 23 0.016 1.4 10.8 0.2 1 23 1474 1496 1474 1497 0.94 21 23 0.15 13 7.8 0.0 1 23 1518 1540 1518 1540 0.97 22 23 0.033 2.9 9.8 0.6 1 23 1546 1569 1546 1569 0.95 23 23 0.0011 0.096 14.5 0.4 1 23 1577 1600 1577 1600 0.96
Sequence Information
- Coding Sequence
- aTGAATGTGAATTACGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGACTCGGAGCCTCTTGTCCTCGCATCAAAAATCAAGGATTGCGTGGCCGTACAAATAAACGAGAATGACGGCCTGCCATCGAATGCCTGCAGGAAATGCGTGAACAACGTCAATAACTGGCACATATTTAAGACAGTATGTGAAAGGACACAAAACAAACTACAGTCTCTGATTAAAAAAGATGGCAGCCAACTAGAAGAGATAAACATTAAAAGTGAACCTCTGTCTGATGAAGCCTATGATGATGGAGTGGTCATTGATGGAGGATATAATGAGgttGCCAGTAGCAGTAAGACTCTACCTGAAGGCCCACCGATCCTGGCTTCCCTCGGACTTACACCGCGGAGTGATAAGGGCGTCGAGAGTGAAAAGGACGAGGAAGAGGACGAAGATGAAGACATGAGCATGTTGGAGCAGGTCCAGCAGCAGCAGTTCACCAAGGCGGTGGGCAACATGCCGGAGGTGTCCATCACGGTGATGCGGCCCAGCGGCGAGACGCTGCACGCGCGCCAGGGCATCCAGCAGCTCGCGTCCAAGGACTGCCTGGTGTGCGGCCGCGCCTACAGGTACTCCCACAACGCGCGCCGCCACGAACTCACCGCCCACAGCTTCGACCGCTACACCAACAAAATCAACCCGCCCAAGAAACCCAAAACACACCTCCAACCCAAACTCAGACTCAACCCGTTCAACCCCAAAGCCCGGCTCATGCCCAACCCCATCAACCACAAGCGGTTCCAAAAACCTGTGCCGTCCAGAATAATGCCCTCGCGAGTCGTCGCCCCGCCGAAACCTATACCCATCAAGAACGCCAAACCCGTTCATAATAACCTGCCTTACCCCTTGCGCATAAAAGCGTTAAAAGATTTGCAAATCAAAAAGAAGGAGCCGCAAATTTTGAAGACGCTCCTCACGTCTAAACCCGAGCTGTTGGTCTCCGAGCCTGAAATAATAAATTCTGGACCAGAAAGCCCGGAGACTTTAATATCTGAGCCTGAGATTGCGTCATTTCAAGTTGAAACTATCTTGTCTGAACCTTACGATCAAAACCAGGAGGAGGAGGAAGTTGATGAATCCCTTAATCAGAACCAGCATTATGACACTGTTGATATGGAATCTGACAACGAGATTGAAATCGCTCGCCAACAGGAGAATGAAGGGGAAATTGAAGAGAACCAGGACGAACATGATGGCGATGACAACATGCAGCAGGATAATGAACATCAAGAGGAGGAGGGTGTGGAAGGTGAGATCAGCGAAAACGAGAATGGACAACAAGAGGAAGATGAAGAACACGACGGAAGTCAGGGAGATATTACAGTAGACGAACATAATGATATTCAAGCCGAGGCCGAGCGAGATAACGGTGAAAGTAATGGTGACAGAGAGGAGGAACAGGAAGATGGTAATGACGCCGAGGATAACGAGAATGAGGAGGATGAAGAACTCCCGCCAGGTCTAGCACCGGTCGTAGAAATCAACGAAGATATGCAGACTAACTCGTACAACAGTGAACAGAACGAAGAAGAGGAGGAGGAACTCAATGAATCCGCTGCCAACGAAACTATAGACGAAGACGTCAAGGAATACGACCCTGACAAGATTTACGTCACCAAAACGCAGAGAGATTTCATCAACAAATACAGGGACGTCATACAACAGATTAACACTAAAACGTGCCTTTGTTGCGACAAGGAACATCCCCGCAGAAAAGCTGTCATACAGCATTTACAGAAAAATGGACACAAAGTACCAAAACACACGTGCTATAATTGTGTTATAACTTTTGGTCATATTGGCGCATTGCTTAGTCACATGAGAGCTAATGTTTGCACGGACCTTTGGAAGGTAATCTACAATGAGCAGGGAATCACCGACAACCTGGTCGTACAAGAGCCCAAAGACAATAAAGTCCAATATAAGGATATTTTCAATGCTAGATCGTATGCATGTAAACTCTGCCCGGCTAAATTCCAACTTAAACAGTTCGTTATGAAACACGTTCTGGATGTCCATGAAGATGGTCAGTCCCGAGTCCAAATGGCCTGCGTCCATTGCGGGTCTAGGTTCAAAGACAGGTCCTTATGGAAGAGACACATTCGGAAAGGGGAATGTACAGTTTACATCGCGTGTGACCTATGCCCTGAGAAATTCGTCAATATGCAAGACTTCAATGACCACGCGCTACATGTCCACGCGGGCAGTTTCGATCCCGACAATCAGAAAAATTGCATCGACGGTCGGCCCACCGACTGTCCTCTATGCGGAAAGAAACACCCGAACTATCCTCATCTGGTGAGACATTTGAAGACTGCTCACGATGAGGACAGGCCTCACTACTGTCAGAATTGTGATGCTAAATTTGAAACCAGCGTCGACCTGAATAAGCACATCTACGCCGAACATTCCGACAAAGTGTTAGGAAATCAATCCATCGAGCCGGATATGTCGCTCGTCAAGGAGGAAGCTGAGGAATACCACTACTCGTGCACAGAATGCAATGCCATTTTCGAAACCGTAGACGCATGGACGGACCATCAAGTCGCGGAACACAATCAAGTCGCTCACCACTGCGACCAGTGCGAAAAGAAGTTCCTGCGCCCGTCCGAGCTAGCTGAGCACAAAAACACACATCTCCGGGTGAAGTTCTACCCCTGCAGCGTCTGCTCCAACTCCTACAGCACCCCGCAGAAACTATCCGAGCACGTGCAGCAGGCACACCCCGGCGCCGCCGCGATGGCCGCCGCCGACTCCGAATTCTTTTGTGATATTTGCATCAGGTCCTTCAAAAGTCGCCAGGCCTATTCTAACCACATGCGCATCCACGCTAAAGTTCCTACTACCAACAGAAAACCGGGCGAAGCTAAAGGATTCGCCCCGCAGATAATCGGAAAGCCGATCAAGCAGTTCCCCATGATCCAGCCCGGGTTCGCGGCGTTCAAGCCCAACATCAACGTACCCAACGCCCCATACTGCTGCGACATATGCGGGAAGGGCTTCATGCACAAGAAAAACATATGGAAACATAAGAAAGTTTTGCACGCGGACATCCTTAACGAGAGGAACGACAGCGAAGAAAACACTATGCAGGCGTCCACAGAGGAAGACGAATATAATGTCGATGAAAATGGTATCGCGTTGTCTACGCCTCAGTTCAACAGCTTTAACTTTTCGAACTTTGCTAACAACGCGCAGCACCAGCCGCAGCCGCAGCCGCAGCCGCCAGCGCCCGCCGCGGCGCCGGCCGACGCGCTGCCCTTCTCCTGCGAGCTCTGCTACAAGCGCTTCCCGCTCCGCACCAGTCTGTGGAAGCACAAGCGCGCCAAGCACGGCATCATCAACGCCAGCGTGTCCGGCAACCCCGAGAACCAGGCGCCACCGCCTCAACCGTCGGAAGGCGGCAGATCCAGTTGCACTATTTGCAAGATTACATTCTCCGATAAAAAATCCTACTATCGCCACAGAAAGAACGTGCACAAATCCTCGGCACAAATATGTAAAATCTGCGGGAAACCAGTTAATTCCACGTTGGAACTGTACGAGCACCTGAAGGCCGCGCACGCCCGTGAATTACTAGGATACAACGCTAACCAGGGCACGAGTAAAGCGCAAGATATCTCTCAGGAGGCCGAGGTGGAGTATGAGCCCGATCCCGAGGTCGCGGACCCCAGCGCGGAGTATCAAGCTCGATACCCGTGCGACACGTGCGGCAAGCAGTTTGTAGGTCTCCTCGCCTTACAGAACCACCAGTGTATCAACCAAACCTCTTCGGAACCGCAGACGTTCGACTGTGAGATCTGCCACAAGAGTTACACGTCTATCGCCGCGTTGAAGAGTCACCGTGGCTGGCATTTACGCTCGCCCGACGGCAAGGCCGCGGCCAACAACAGCGGCCTGTGGATGCCTCAGCACAAAGTGACCAGCAAGGTCAGCAAGCACGAGGTCGTGGACCCGTCGCAGCTGGCGCGGGTCACGCACTCCACCCCCACCGCGACCGCCACCACCAAGAGAAGACTGCCCCCGGAGGTCGAAGTGACCGTCGTCAATCCTAACAAGAAATTGCGATCCGACGATTCTATGGAGCTCGAGCAGCAGAACAGTTTGCCGGGTGCCTTAGAAGATAGGTACTGTACTATTTGCGACAAAGAGTTTACGAAACGCGCGGCGTATCAGCGTCACATGGACGAAGTTCACCAGCCGAATTCGGTGTTCTGCCCCGTGTGCGACAAGAGCTTCACGCGCAAGTCGACTCTACTCGTACATATGAAAAAGCACTACGGGGGCGACGGCGAGGGTAGCACGAGTGGAATAGGGCAAGTAGAGGAGGACGGGTTCGCGTGCGACGTTTGTGGCAGCCAGTTCGGCAGCGAGAACGCGTTGCGCGCGCACAGAGCGAGACACCACGCAGAGGAAGAAGAGGAATCCGATGACGATGGCAACGTGCCCATAGCGCAGCCCGGCGAGTTCACGTGCGGGCAGTGCGGCGACGGAGTGGCAACGCCGCGCGACCTGATCGCGCACCGCACCATGCACGCCACGCCCACCAAATTCTTCTGCAACATCTGCAAGGTCTACTTCGCGCGAGCCCTGGACCTGTCCTCGCACACCCGCGCAAGGCACGCGGACAACGAAAAGGTCTACTTCCCCTGTGCCATGTGTGAACGCTTCTACATGAACAAGAAGAGTTTACAGCGACACATCGAGATGGCTCACTGA
- Protein Sequence
- MNVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPLVLASKIKDCVAVQINENDGLPSNACRKCVNNVNNWHIFKTVCERTQNKLQSLIKKDGSQLEEINIKSEPLSDEAYDDGVVIDGGYNEVASSSKTLPEGPPILASLGLTPRSDKGVESEKDEEEDEDEDMSMLEQVQQQQFTKAVGNMPEVSITVMRPSGETLHARQGIQQLASKDCLVCGRAYRYSHNARRHELTAHSFDRYTNKINPPKKPKTHLQPKLRLNPFNPKARLMPNPINHKRFQKPVPSRIMPSRVVAPPKPIPIKNAKPVHNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPELLVSEPEIINSGPESPETLISEPEIASFQVETILSEPYDQNQEEEEVDESLNQNQHYDTVDMESDNEIEIARQQENEGEIEENQDEHDGDDNMQQDNEHQEEEGVEGEISENENGQQEEDEEHDGSQGDITVDEHNDIQAEAERDNGESNGDREEEQEDGNDAEDNENEEDEELPPGLAPVVEINEDMQTNSYNSEQNEEEEEELNESAANETIDEDVKEYDPDKIYVTKTQRDFINKYRDVIQQINTKTCLCCDKEHPRRKAVIQHLQKNGHKVPKHTCYNCVITFGHIGALLSHMRANVCTDLWKVIYNEQGITDNLVVQEPKDNKVQYKDIFNARSYACKLCPAKFQLKQFVMKHVLDVHEDGQSRVQMACVHCGSRFKDRSLWKRHIRKGECTVYIACDLCPEKFVNMQDFNDHALHVHAGSFDPDNQKNCIDGRPTDCPLCGKKHPNYPHLVRHLKTAHDEDRPHYCQNCDAKFETSVDLNKHIYAEHSDKVLGNQSIEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCSNSYSTPQKLSEHVQQAHPGAAAMAAADSEFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGEAKGFAPQIIGKPIKQFPMIQPGFAAFKPNINVPNAPYCCDICGKGFMHKKNIWKHKKVLHADILNERNDSEENTMQASTEEDEYNVDENGIALSTPQFNSFNFSNFANNAQHQPQPQPQPPAPAAAPADALPFSCELCYKRFPLRTSLWKHKRAKHGIINASVSGNPENQAPPPQPSEGGRSSCTICKITFSDKKSYYRHRKNVHKSSAQICKICGKPVNSTLELYEHLKAAHARELLGYNANQGTSKAQDISQEAEVEYEPDPEVADPSAEYQARYPCDTCGKQFVGLLALQNHQCINQTSSEPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDPSQLARVTHSTPTATATTKRRLPPEVEVTVVNPNKKLRSDDSMELEQQNSLPGALEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYGGDGEGSTSGIGQVEEDGFACDVCGSQFGSENALRAHRARHHAEEEEESDDDGNVPIAQPGEFTCGQCGDGVATPRDLIAHRTMHATPTKFFCNICKVYFARALDLSSHTRARHADNEKVYFPCAMCERFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00010410;
- 90% Identity
- -
- 80% Identity
- -