Lstr034147.3
Basic Information
- Insect
- Lathronympha strigana
- Gene Symbol
- RHOBTB1
- Assembly
- GCA_949128165.1
- Location
- OX421921.1:4576364-4593527[-]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.5e-07 0.00019 22.8 0.1 5 48 214 254 211 272 0.81 2 3 0.0012 0.53 11.8 0.1 49 109 351 418 341 419 0.77 3 3 1.8e-17 7.8e-15 56.3 0.1 6 106 443 542 439 546 0.93
Sequence Information
- Coding Sequence
- ATGTCGAGTTCTGCGAGGGGAATCGGACTGCCCAGAATTAGTCGAAAGgtatTGGAAAGATCTTGGGAAGTGGTGGACGGTGTGAACGTGTCACTCCGGCTGTGGGACACTTTCGGGGACCACGAGAAAGACAGAAGATTCGCTTATGGGAGGTCTGATGTAGTGCTGCTATGTTTCTCTATTACCAATCCGATATCGTTGAGGAATTGCGGAGCGATGTGGTATCCGGAGATAAgACGGTTCTGTCCAAACACGCCGATTCTTCTGGTGGGGTGCAAGAACGACCTGCGGTACATGTACAGAGATGAGACATATCTGAGCTACTGCAAAGACAGGAGCCCATTCATCAGAACCCCGCGAAAGAGTGACCTAGTAATGCCGGACCAAGGGCGCGCGCTGGCGGCCGAGTACGGCATCTACTACTACGAGACGTCCGTGTTCACGTACTACGGCGTCAACGAGGTGTTCGAGAACGCGATCCGCGCGGCGCTCAtagcgcgccgccagcagcgcttCTGGATCACCAACCTGAAGCGGGTGCAGCGCCCGTTACTACAGGCTCCATTCAGACCACCGAGACCTCTTGAGCCCGATGTGGTTCCAGTCAACTCCAGCTATTTGGAGAACACGGCCACATTATTACGCCAGCAGTATTTCTCGGATATGGTGATAATCTGTGGCGCTAAGGGATTCCCAGTACACCGTTTCATGATGGCGGCCGCGTGCGAGGCGTTCCACCGGCTACTGACCACGGAATGCGCGCGTTCTGCCGAGCTGGCTCGCTCCTCGAGTGAGAGCAGCATGGTGAGCAGCATGGGCGAAGCCACCACGGGAGACTTCAACGAGGACACGGAGTATCTGATTCGGCAGGATCAGGCGAAACAAATGAGAGTGTGGGATCAAATCAAACGGAGGTCTTCTTGTCAAATTTTGACCCTGAGCGACAGCTGTAAGAAACCTCCAGATCTCTACAGGGAGGTCAACCATCCAGCCATCAACTCTATTCGGGTAGTCAAGTGCGACAAAATCCAACACGCGACTTCCGCAACGCAGACCATAGTCACTATGAGCAAACTGATCTCGCAAACAGTCATGCAAGAAATCATCAACTTCGTGTACACTGGTACCCTCGACGGCACAGCTTTCAAACAACAGTCCGCTGCAATTGGATTATTACTgGAGATACGCCAAGCGGCGGAGCTGCTCGGCTTCCACGAGCTGACGAAGCTCACGCAGTTCATACTTGACCAGCATCTGTTGTTCGACAAGGTGTTCATGCAGAAGTTCCACATGCCAATACCTCAACGCCTGCGAGAGATGTACGTGGAGCGCAACCTGTTCGCGGACATAACCTTTGACCTGGACGACGGCATCCACCTGGCGCACAGAGCCATCCTCATGGCTCGGTGCGACCCTATGAAGGCGATGTTCCAAGGGCACTTCAGAGAAAGCACCAGCAGAATGATATCGTTCCCCGGCGTGAAAATGTACGCTTTCCACATACTACTCTGCTACATATACTGCGATAACATCCCCGTGGTGGAGCCAACGCGCTGCGTGGAGCTGCTCGAGCTGGCGAACAGATTATGCATGAACCGTCTGGTCAACCTGGTGGAGGCGAGGGTCATTGATCGACTGCGGCATCAAGACAGATTATGCGGAGAAGACGACCAAGTTGTTGAAATAGTACTTTCGTTGTTGGAGCCTGTAAAGTTGCACAACGCGCACAACCTGGCGGACTGGTGCGTGTGGCGGCTGTGCggcgcgtacgaccgcgtgTGCCGCGCGCGCGCGCTCAGACACATCGGCGCCGCCTCCAGGGACTACCTGTCCGAGAACCGCTGGCCGCCGTTGCACAACGCGCACAACCTGGCGGACTGGTGCGTGTGGCGGCTGTGCggcgcgtacgaccgcgtgTGCCGCGCGCGCGCGCTCAGACACATCGGCGCCGCCTCCAGGGACTACCTGTCCGAGAACCGCTGGCCGCCGTTGCACAACGCGCACAACCTGGCGGACTGGTGCGTGTGGCGGCTGTGCggcgcgtacgaccgcgtgTGCCGCGCGCGCGCGCTCAGACACATCGGCGCCGCCTCCAGGGACTACCTGTCCGAGAACCGCTGGCCGCCGGTCTGGTATGTGAAAGAGTACGACTTTTACCAGAAGTGCGTGACGGAGCAATCTAAGGAGCAGAAAGAGATACGGCCCGCTACTTCGGTGCAAGCGAGCCAGCAGACAGGCTGTCTCTGTTTCACCAGCAAGAGTCGACGCGAGAGTGAGGGCGCGGCGCCGGAGGCGAGCGCGCTGTGCCGCCCGCAGCCCGCGCCGCACCAGCCGCTCTGA
- Protein Sequence
- MSSSARGIGLPRISRKVLERSWEVVDGVNVSLRLWDTFGDHEKDRRFAYGRSDVVLLCFSITNPISLRNCGAMWYPEIRRFCPNTPILLVGCKNDLRYMYRDETYLSYCKDRSPFIRTPRKSDLVMPDQGRALAAEYGIYYYETSVFTYYGVNEVFENAIRAALIARRQQRFWITNLKRVQRPLLQAPFRPPRPLEPDVVPVNSSYLENTATLLRQQYFSDMVIICGAKGFPVHRFMMAAACEAFHRLLTTECARSAELARSSSESSMVSSMGEATTGDFNEDTEYLIRQDQAKQMRVWDQIKRRSSCQILTLSDSCKKPPDLYREVNHPAINSIRVVKCDKIQHATSATQTIVTMSKLISQTVMQEIINFVYTGTLDGTAFKQQSAAIGLLLEIRQAAELLGFHELTKLTQFILDQHLLFDKVFMQKFHMPIPQRLREMYVERNLFADITFDLDDGIHLAHRAILMARCDPMKAMFQGHFRESTSRMISFPGVKMYAFHILLCYIYCDNIPVVEPTRCVELLELANRLCMNRLVNLVEARVIDRLRHQDRLCGEDDQVVEIVLSLLEPVKLHNAHNLADWCVWRLCGAYDRVCRARALRHIGAASRDYLSENRWPPLHNAHNLADWCVWRLCGAYDRVCRARALRHIGAASRDYLSENRWPPLHNAHNLADWCVWRLCGAYDRVCRARALRHIGAASRDYLSENRWPPVWYVKEYDFYQKCVTEQSKEQKEIRPATSVQASQQTGCLCFTSKSRRESEGAAPEASALCRPQPAPHQPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00010275; iTF_00410436; iTF_00411591; iTF_00409422; iTF_01134929; iTF_01463417; iTF_01135898; iTF_00412636; iTF_00325535; iTF_01464287; iTF_00654408; iTF_01133909; iTF_00657334; iTF_01072663; iTF_00289759;
- 90% Identity
- -
- 80% Identity
- -