Lstr013586.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lathronympha strigana
Gene Symbol
sox21b
Assembly
GCA_949128165.1
Location
OX421906.1:24155602-24170453[+]

Transcription Factor Domain

TF Family
HMG
Domain
HMG_box domain
PFAM
PF00505
TF Group
Other Alpha-Helix Group
Description
High mobility group (HMG) box domains are involved in binding DNA, and may be involved in protein-protein interactions as well. The structure of the HMG-box domain consists of three helices in an irregular array. HMG-box domains are found in one or more copies in HMG-box proteins, which form a large, diverse family involved in the regulation of DNA-dependent processes such as transcription, replication, and strand repair, all of which require the bending and unwinding of chromatin. Many of these proteins are regulators of gene expression. HMG-box proteins are found in a variety of eukaryotic organisms, and can be broadly divided into two groups, based on sequence-dependent and sequence-independent DNA recognition; the former usually contain one HMG-box motif, while the latter can contain multiple HMG-box motifs. HMG-box domains can be found in single or multiple copies in the following protein classes: HMG1 and HMG2 non-histone components of chromatin; SRY (sex determining region Y protein) involved in differential gonadogenesis; the SOX family of transcription factors [1]; sequence-specific LEF1 (lymphoid enhancer binding factor 1) and TCF-1 (T-cell factor 1) involved in regulation of organogenesis and thymocyte differentiation [2]; structure-specific recognition protein SSRP involved in transcription and replication; MTF1 mitochondrial transcription factor; nucleolar transcription factors UBF 1/2 (upstream binding factor) involved in transcription by RNA polymerase I; Abf2 yeast ARS-binding factor [3]; yeast transcription factors lxr1, Rox1, Nhp6b and Spp41; mating type proteins (MAT) involved in the sexual reproduction of fungi [4]; and the YABBY plant-specific transcription factors.
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 5.2e-30 8.1e-27 94.7 2.8 1 69 11 79 11 79 0.99

Sequence Information

Coding Sequence
ATGTCGTTGGGTAAACCGCCGTCTGAGCATATAAAGCGGCCTATGAACGCTTTTATGGTGTGGTCGCGGGGGCAGCGGAGGAAGATGGCTCAGGACAACCCGAAGATGCACAACTCGGAGATCTCGAAACGACTAGGGGCTGAGTGGAAGCTGTTGACGGAGATGGAGAAGCGACCTTTTATTGATGAGGCGAAGCGGTTGAGAGCCCTCCACATGAAAGAGCACCCCGACTACAAATACCGTCCCAGACGAAAACCGAAAGCCCTAGTCAAAAAAGAGCCCAAATTCGGGTTCAACATCAGCGGGCTGATGGCGCCCGTGCCGCGGCTGCTCACGCCATCCATGCCCCCGCCGATGGGCATGCCGCTCATGTCGGACAAGCCGGAGCTAGGCCGGGCGCTGTTCCCGCCGCTGCCGTACCCGTTCTACCCCTTCGCCAAGCTGCCTGATGATGGGAAGCTGGCGGCCGAGCTGGCGCATTTGCAGGCTCTCTACGGTGGGGCGTTGTACGGCAGCGCATTGTACAGCAGCTCCCTCTCCCCCTGCGGCTGCCCCCCGCGCCGTACGCCCTCACCCCCCGCGGACGTGAAGCGGCCCGTGGCCTACGTCCTCATGAAGGACGAGGAACCCCCGCAGCACGTCATATGA
Protein Sequence
MSLGKPPSEHIKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLTEMEKRPFIDEAKRLRALHMKEHPDYKYRPRRKPKALVKKEPKFGFNISGLMAPVPRLLTPSMPPPMGMPLMSDKPELGRALFPPLPYPFYPFAKLPDDGKLAAELAHLQALYGGALYGSALYSSSLSPCGCPPRRTPSPPADVKRPVAYVLMKDEEPPQHVI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00347457; iTF_00635394; iTF_00288033; iTF_00842657; iTF_01147361; iTF_00836546; iTF_00290691; iTF_00428995; iTF_01140899; iTF_01149571; iTF_00114084; iTF_00157188; iTF_01079876; iTF_01148068; iTF_00076517; iTF_00149381; iTF_00236613; iTF_01143077; iTF_01144517; iTF_00044486; iTF_00075526; iTF_00723942; iTF_01142374; iTF_01279238; iTF_00801831; iTF_00820071; iTF_00461544; iTF_01437032; iTF_00055401; iTF_00790249; iTF_01125449; iTF_01281322; iTF_00195147; iTF_00250444; iTF_00428108; iTF_00433133; iTF_00682413; iTF_01034573; iTF_01138926; iTF_00364911; iTF_01312207; iTF_01437968; iTF_01508048; iTF_00406737; iTF_00837521; iTF_01152145; iTF_01502961; iTF_00390354; iTF_00651730; iTF_00683346; iTF_01141650; iTF_00155283; iTF_00960147; iTF_00026836; iTF_00407572; iTF_01146196; iTF_00787637; iTF_01140181; iTF_00818326; iTF_01033718; iTF_01443830; iTF_00063575; iTF_00824727; iTF_01134775; iTF_00887384; iTF_00418969; iTF_00958649; iTF_00959385; iTF_01148794; iTF_00022779; iTF_00035643; iTF_01135740; iTF_01071613; iTF_00843518; iTF_00859454; iTF_01220638; iTF_01282270; iTF_00277343; iTF_00935711; iTF_00994335; iTF_01073599; iTF_01507199; iTF_00235840; iTF_00421344; iTF_00908832; iTF_00985088; iTF_00986080; iTF_01438912; iTF_01490112; iTF_00777986; iTF_00247172; iTF_00213428; iTF_00777364; iTF_00375203; iTF_01028279; iTF_00374105; iTF_01118297; iTF_01246970; iTF_00467395; iTF_01062787; iTF_00041761; iTF_00301161; iTF_00302093; iTF_00446130; iTF_00039798; iTF_01084252; iTF_01342204; iTF_00043486; iTF_00208868; iTF_00377092; iTF_00638628; iTF_00661266; iTF_01529176; iTF_00662208; iTF_00036709; iTF_01453253; iTF_01569317; iTF_00702886; iTF_00700106; iTF_00703950; iTF_00706000; iTF_00697332; iTF_00701051; iTF_00698300; iTF_00785190; iTF_01099815; iTF_01528276; iTF_00321579; iTF_00758156; iTF_01094905; iTF_00924667; iTF_00906140; iTF_00124255; iTF_00781004; iTF_00780233; iTF_00844332; iTF_00951820; iTF_01402700; iTF_00345795; iTF_01335919; iTF_00673488; iTF_00186162; iTF_00878834; iTF_01017714; iTF_00405889; iTF_00288852; iTF_01179474; iTF_01180292; iTF_01377458; iTF_00354068; iTF_01151191; iTF_01526006; iTF_01527213; iTF_00279095; iTF_00276400; iTF_00953496; iTF_00954446; iTF_00237563; iTF_00318843; iTF_00771067; iTF_00835580; iTF_01093084; iTF_01441078; iTF_00171741; iTF_01072478; iTF_00656129; iTF_00289598; iTF_01336830; iTF_01387582; iTF_01388453; iTF_01171455; iTF_01487684; iTF_00785987; iTF_00809124; iTF_00810052; iTF_00973769; iTF_01361610; iTF_00783467; iTF_01285525; iTF_00383639; iTF_00784378; iTF_00000319; iTF_01206531; iTF_01202446; iTF_01205682; iTF_01203221; iTF_01204021; iTF_00358544; iTF_01561989; iTF_00114930; iTF_01124576; iTF_00355141; iTF_01546631; iTF_00323495; iTF_00161530; iTF_00162798;
90% Identity
iTF_00321579;
80% Identity
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