Lstr024065.2
Basic Information
- Insect
- Lathronympha strigana
- Gene Symbol
- -
- Assembly
- GCA_949128165.1
- Location
- OX421913.1:17420428-17428995[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4e-11 6.5e-08 33.4 0.0 4 39 196 232 193 236 0.89 2 4 1e-12 1.7e-09 38.5 0.1 1 39 247 285 247 288 0.94 3 4 1.5e-14 2.5e-11 44.4 0.0 2 45 303 347 302 347 0.96 4 4 2.5e-18 4e-15 56.5 0.0 1 43 354 397 354 399 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCCGCGGTTTTCCGCAGGTCAAGCACGAACCGACCTCCGAAGACGACGACTCGCAGTTACACAGCTACCTCACCAGTCAGATACCGTCGCTGGAATTACGACCGGTGAAGCTCGAAGTCGATATAGACGACAATGCGTCCGCGCACATATTACGGCACTTACAGGGTTCAGAGAGTATGGAAGAGCtagcgccgccggcgccggcggGCCCCGCCGCCACGCCGGTCGCCGTCAAGCAAGAGCCCGGCGAACCCGCTGTCACGTTCGAGACCCTTGTGCCAGCACCGCACTCGGATACGCTGGTATGTAGTGTGGAGCAGCCAGCAGTTACGTCCCGACAAGTCGAAACCCTCACATCGGCGCTGCACTCGGCCACCCTGGGCTCCATTCTCATCGACAGACACAAAACGCTGCCTGGAGCCAACGACGCCGACTCCATGGATTTCATGCCTCTCCTTACTGTTAAAGACGAGCCTCTCTCTGAAGGAGAGCAACACCACCTGAGTGGGTCAGATACGAGTGACTCCAGCACCCAGCCGGAACTGCCTCGCGGCAGCCCTAAGAATTGGACGCAGCAAGATATGGAACTTGCACTGGAGGCCTTGCGGACGCACAACATGAGTCTCACTAAGGCTTCAGCCACATACGGCATTCCATCAACGACACTCTGGCAGCGCGCGCACCGCCTCGGCATCGACACACCGAAGAAGGAAGGCGCGTCTAAGTCGTGGAGTGAAGATGATCTGCGTGGCGCCCTTCATGCTTTGCGGTCCGGGGCTATTTCTGCCAACAAAGCTAGCAAGGCTTACGGCATTCCAAGCAGCACTCTTTACAAGATCGCGCGGCGCGAGGGGATTCGCCTAGCGGCTCCATTCAATGCAGCGCCCACCGCCTGGCGGAGAGCTGACCTGGAACGGGCGCTAGCTTCCATTCGATGTGGAGCGGCTTCTGTACAACGAGCGGCTTCGCAGTTTGGCATTCCCACAGGTACGCTTTACGGGCGATGCAAGCGAGAAGGAATCGAGCTGTCGCGGTCTAATCCTACACCGTGGTCTGAAGACGCTATGGGAGAGGCTTTGGAAGCTGTGAGGGTGGGACAAATGTCAATAAACCAAGCAGCGATCCACTACAATCTCCCTTATTCATCACTCTACGGGAGGTTCAAGAGGTGCAAATATCAGAGCCCTCAGACAATACCCCAACAGAACATGCCCGAGATGGAGATGGAGCCCCAACAGGCGCAGCTGTATTATCCGCACCAAGTGCCCATGCCCGAGGAGTATCACCAGAGTTACTTGACGGAACCTGAAGCCATGCATGCGCCCGTCATTCAGGAGCCATACGGGATGTACTACCAAGGTTGGTCGACGTTCATTACCTTTCAGAGCTCTCAAGCAGTGCCCCAAAAGAACGTGCCCAGAGATGCAGATGGGGCCCCAATAAGCCCAGATGTAGTATCCGCACCAAATGCCTTTGCCCGAGGAATACCACCAGAGCCACTTGACGGCACCTGA
- Protein Sequence
- MPGRGFPQVKHEPTSEDDDSQLHSYLTSQIPSLELRPVKLEVDIDDNASAHILRHLQGSESMEELAPPAPAGPAATPVAVKQEPGEPAVTFETLVPAPHSDTLVCSVEQPAVTSRQVETLTSALHSATLGSILIDRHKTLPGANDADSMDFMPLLTVKDEPLSEGEQHHLSGSDTSDSSTQPELPRGSPKNWTQQDMELALEALRTHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEDDLRGALHALRSGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALASIRCGAASVQRAASQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQSPQTIPQQNMPEMEMEPQQAQLYYPHQVPMPEEYHQSYLTEPEAMHAPVIQEPYGMYYQGWSTFITFQSSQAVPQKNVPRDADGAPISPDVVSAPNAFARGIPPEPLDGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00680441;
- 90% Identity
- -
- 80% Identity
- -