Basic Information

Insect: Latheticus oryzae
Gene Symbol: L
Assembly: GCA_030157265.1
Location: CM058054.1:8488133-8494768[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.015 1.1 9.8 0.7 1 23 79 101 79 101 0.98

2 20 0.09 6.6 7.4 4.8 1 23 107 129 107 129 0.97

3 20 9.2e-07 6.7e-05 23.1 3.2 1 23 135 157 135 157 0.99

4 20 0.00014 0.01 16.2 0.3 1 23 163 185 163 185 0.99

5 20 0.00058 0.042 14.2 2.4 1 23 207 230 207 230 0.96

6 20 0.028 2 8.9 0.1 2 23 257 279 256 279 0.93

7 20 0.077 5.7 7.6 1.4 1 23 312 335 312 335 0.95

8 20 0.019 1.4 9.5 0.0 3 23 435 455 434 455 0.95

9 20 0.00075 0.055 13.9 2.4 3 23 465 486 463 486 0.90

10 20 0.014 1 9.9 0.9 1 23 491 514 491 514 0.96

11 20 0.0014 0.1 13.0 5.1 1 23 579 602 579 602 0.97

12 20 0.00022 0.016 15.6 2.6 2 23 684 705 683 705 0.97

13 20 0.0028 0.21 12.1 0.9 1 23 714 736 714 736 0.98

14 20 2.8 2.1e+02 2.6 0.6 3 23 745 765 744 765 0.95

15 20 4.3 3.1e+02 2.1 0.1 3 11 813 821 812 825 0.86

16 20 0.7 51 4.5 0.3 1 23 868 890 868 890 0.92

17 20 0.0068 0.5 10.9 0.1 2 23 899 920 898 920 0.95

18 20 0.0053 0.39 11.2 0.0 1 23 928 950 928 950 0.96

19 20 0.045 3.3 8.3 2.6 1 23 957 979 957 979 0.97

20 20 7.8 5.7e+02 1.3 0.3 3 21 1011 1029 1010 1030 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.015	1.1	9.8	0.7	1	23	79	101	79	101	0.98
2	20	0.09	6.6	7.4	4.8	1	23	107	129	107	129	0.97
3	20	9.2e-07	6.7e-05	23.1	3.2	1	23	135	157	135	157	0.99
4	20	0.00014	0.01	16.2	0.3	1	23	163	185	163	185	0.99
5	20	0.00058	0.042	14.2	2.4	1	23	207	230	207	230	0.96
6	20	0.028	2	8.9	0.1	2	23	257	279	256	279	0.93
7	20	0.077	5.7	7.6	1.4	1	23	312	335	312	335	0.95
8	20	0.019	1.4	9.5	0.0	3	23	435	455	434	455	0.95
9	20	0.00075	0.055	13.9	2.4	3	23	465	486	463	486	0.90
10	20	0.014	1	9.9	0.9	1	23	491	514	491	514	0.96
11	20	0.0014	0.1	13.0	5.1	1	23	579	602	579	602	0.97
12	20	0.00022	0.016	15.6	2.6	2	23	684	705	683	705	0.97
13	20	0.0028	0.21	12.1	0.9	1	23	714	736	714	736	0.98
14	20	2.8	2.1e+02	2.6	0.6	3	23	745	765	744	765	0.95
15	20	4.3	3.1e+02	2.1	0.1	3	11	813	821	812	825	0.86
16	20	0.7	51	4.5	0.3	1	23	868	890	868	890	0.92
17	20	0.0068	0.5	10.9	0.1	2	23	899	920	898	920	0.95
18	20	0.0053	0.39	11.2	0.0	1	23	928	950	928	950	0.96
19	20	0.045	3.3	8.3	2.6	1	23	957	979	957	979	0.97
20	20	7.8	5.7e+02	1.3	0.3	3	21	1011	1029	1010	1030	0.89

Sequence Information

Coding Sequence: atgaaaatgctTTTTAAAGGAAACAGCAGTCGGCTACAATTacttatagaaaaaattcaatccaCCAAGGAGAATGGGGAGTTTAAAACTCCAGtagctgaagatgaaactgctACTAGTTCAATATCTGGAGGTTCAGTTGGCGCCGAAACTGTACAAGGTTTTGATGATCTTGTACAAGGGTCGGAAGAACCAGCTCAGGAAGATCAAGATCATGACACTAAAACAGGATCATACAAATGTACGGTATGTggagaaaattatttaaaggAGAAACAACTCAGGGAACACGAACAGAGTCACACAGATCATCTCCAATTTACTTGCGCTTATTGTCCTCGTTTGTTCAAACACAAACGTTCAAGAGATCGTCATACTAAACTCCATACCGGAGATAAAAACTACAAATGTCAACAATGCGATTCAGCATTTTCACGAAGCGATCATCTTAAAATTCATATGAAAACCCATGACAGTCGTAAACCATATAAATGTGGTACATGTAACAGGGGTTATAACACAGCGGCTGCTTTATCATCCCACCAACAAAGTCACTTAAAACAAGAATCTCGATCTGGGAGTCGCACAAGTGGAGGAAGTACACCTAGTCCTGAGCTTTTTCATTGTAGTCATTGTACTGAAACTTTCGGAAAAGCAGATCTTCTTCAgaatCATATAACAATGGTTCATAGTGATACTGATTCAACATTAAGTCAAACTCCTGAACCATTATCTGAATGTCAGAATCAAAtcgaagatttaaaaatagtttgCATGTATTGTTCTAAAGAGTTTCCAAGTTTGGATTTAATGTATCAACATACAAATTTGGCTCATAGCGATGTTCCAAACGGTGTTTCAACATCCGTTTCAGCGTCATCTCCAACTACTCAAATCTCACCAAAACAAGAGATTTGTCAAAATGGAACTAGTTATTCCTGTGATAGATGTACAATGCAATTAGATTcgttacaaaatttaaaaaaccacATTCATAATGTACACTGGCATCCAACGTTATCACCAAAtcctataaaaaattacggAGATATTTTAACAACTGACAAAAGTTATTCTTTATTTCAAACTCAACCGACCGATTTAAGCAGGAAACGAAAAAATGAAGACAATGGTGACAAACTAATGAAAAAGAAACGTTCATCACCGACTATAAGTCCTTACGACTCTAATGATAAACCATGTATTTGCTCCTGCTGTTATGCACAGCTACcaaattttaagagttttcTCCATCATATGGAATGTCATgttatttcttcaaataattcCTTATTGGGATTCTGCCCCGTTTGTGGAGAACCAGGTCGAGATCCTGTTTCTTTCACTAATCATATTTTTGGCCACGCAATCGCTCAAGTACCTGGTCGTTGTTGTTACACTTGCAAGAAGTCTTTCGAAAGATTAGAAGACTTACAAAAGCATTTGCTAGATGCACATGTTGTTTCCATTTTTAAGTGTTCGATTTGTAATGACATATTTGATACGAAAATATCAATGCAATTGCATATGACTAATAAACACAGCGATGAATGCAAACACtttaaatgttatttatgTACGAATCAAGTTTTTCATGATAGATTATCAGCGGAATTGCATATATCAATGAAACATTATCAACAGTTTACTCCGTGCGTTAGCTCCAACCAAACTCTTTTAAGAACTCAATATCCGACGGAAATGGATACAAGATTTCGAGAGTATAACTTTGTTTTTCAATGTACTTTCTGTCATAAAACCTTCAAGGACCAGTATTCACAATATATGCACATCCTCAAGGAGCACAACGACAGCAAAGAGGgtgaaaagtttattttggATTCAGCAATGAATCATACTCCGTCCAGATCTCCAAATTTTATGTTTCCCAAAATTGTAACTCCAGACCATGTTATAATGGATTCAACAAATTTAGAAACACTATATACTTGTGATATATGTAATCGAAATGATATAACTTCAGAAGTGGATTTAATAAGTCACAAAAAGCTTCATcatagtaaaaataaaatcggcGCTGTTAGTTTACAATGTGCTTATTGTAACGAATATTGTAAATCTCGTAACGATTTAGAAAATCATATGAAGACGCATCAAGTAACTTGCGGAAAAGGCAAACATAAATGTAATATTTGCGACGAAATTTATTCTTCAACATTGACCCTAGCTGATCATAAACTTACACATTGCAAAATAATCGAAGGGAATAGTTGTGTTCAGTGTAAATCAGTGCTGAGTGACGAACAGTCATTTTATAACCATCAGTTACAACATAGTAACAGTCCATCTAAACCAAATACACAAATACCTCTACCCGCAAACTGTGTAATATGTTGCCAAACTTTACAGACAGATGTGGAAATTAAACTACATGcgaaatttcatttgaaacatATTATCCAAAAAGAAGTCCTGTGTGGAGTGTGCAATAAAGTTTTCGATATTCAAAGCGGTCAAACAGTGAATAATTTCGATAAAACACCAGACAATATTAGTATTTTCTTGTGTAAAGACTGTAGTAATAAAACTAATGGAACAAACTCCGATTGCGACAGTAAAATTCCAACATCAGCGAAACAATATTCCTGTATTCAATGTCCGCAAACTTTCGAAAGTGAAAACGAAATTCAAAACCACTCTACTATGCATATGTTAAACGAAGGCACGAATTTAGAATGTCGACTTTGTAAGCAAGTTTTTGCATCTCCATTAAAACTACAAACGCATTTAATTGAGCATAATTTCTACGGAATGAACCAATATAGCTGTTACGTTTGTTCTTCAGTTTTCACAGCGGCAAGTGGCTTACAAAATCATATTATAGGACATGGTTTAGACAGCAGACCTTATGAATGTACGCAATgccaaatgaaatttttctttcgaaCTGAACTAGATAATCACAGATTTGTTCATGTCCTTCAGACAACTACAAACTCTCAAAAGTCTTATACTAACAACggtattgaaaatatttacgaGAATAAGTCAAGTCCtagttataaaatttgtaaatattgtTCAAATTCTTACTTGGACAATTCATTTTTCTTAGAACATATAAACCAATGTCCTTTTAATATAAGTCCAAAACGAGAGAATTTTGATACAAATACAAGTAATGTAGacaataatataaaacaaGAAGTAACAGAAATTTCAACTGATGTTGTTAAAAAGGACGAGCAATAA
Protein Sequence: MKMLFKGNSSRLQLLIEKIQSTKENGEFKTPVAEDETATSSISGGSVGAETVQGFDDLVQGSEEPAQEDQDHDTKTGSYKCTVCGENYLKEKQLREHEQSHTDHLQFTCAYCPRLFKHKRSRDRHTKLHTGDKNYKCQQCDSAFSRSDHLKIHMKTHDSRKPYKCGTCNRGYNTAAALSSHQQSHLKQESRSGSRTSGGSTPSPELFHCSHCTETFGKADLLQNHITMVHSDTDSTLSQTPEPLSECQNQIEDLKIVCMYCSKEFPSLDLMYQHTNLAHSDVPNGVSTSVSASSPTTQISPKQEICQNGTSYSCDRCTMQLDSLQNLKNHIHNVHWHPTLSPNPIKNYGDILTTDKSYSLFQTQPTDLSRKRKNEDNGDKLMKKKRSSPTISPYDSNDKPCICSCCYAQLPNFKSFLHHMECHVISSNNSLLGFCPVCGEPGRDPVSFTNHIFGHAIAQVPGRCCYTCKKSFERLEDLQKHLLDAHVVSIFKCSICNDIFDTKISMQLHMTNKHSDECKHFKCYLCTNQVFHDRLSAELHISMKHYQQFTPCVSSNQTLLRTQYPTEMDTRFREYNFVFQCTFCHKTFKDQYSQYMHILKEHNDSKEGEKFILDSAMNHTPSRSPNFMFPKIVTPDHVIMDSTNLETLYTCDICNRNDITSEVDLISHKKLHHSKNKIGAVSLQCAYCNEYCKSRNDLENHMKTHQVTCGKGKHKCNICDEIYSSTLTLADHKLTHCKIIEGNSCVQCKSVLSDEQSFYNHQLQHSNSPSKPNTQIPLPANCVICCQTLQTDVEIKLHAKFHLKHIIQKEVLCGVCNKVFDIQSGQTVNNFDKTPDNISIFLCKDCSNKTNGTNSDCDSKIPTSAKQYSCIQCPQTFESENEIQNHSTMHMLNEGTNLECRLCKQVFASPLKLQTHLIEHNFYGMNQYSCYVCSSVFTAASGLQNHIIGHGLDSRPYECTQCQMKFFFRTELDNHRFVHVLQTTTNSQKSYTNNGIENIYENKSSPSYKICKYCSNSYLDNSFFLEHINQCPFNISPKRENFDTNTSNVDNNIKQEVTEISTDVVKKDEQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01568303;
90% Identity: -
80% Identity: -