Lory003493.1
Basic Information
- Insect
- Latheticus oryzae
- Gene Symbol
- su(Hw)
- Assembly
- GCA_030157265.1
- Location
- CM058049.1:13273679-13276207[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.7e-05 0.0013 19.1 0.7 1 23 148 171 148 171 0.96 2 13 5.4e-05 0.004 17.5 1.0 1 23 202 225 202 225 0.96 3 13 1e-06 7.4e-05 22.9 1.6 1 23 231 253 231 253 0.99 4 13 3.6e-06 0.00026 21.2 0.5 2 20 260 278 259 280 0.94 5 13 7.7e-07 5.7e-05 23.3 1.3 1 23 291 313 291 313 0.98 6 13 6.3e-06 0.00046 20.4 0.3 1 23 323 345 323 345 0.98 7 13 3.3e-06 0.00024 21.3 0.3 1 23 351 373 351 373 0.98 8 13 8.5e-06 0.00062 20.0 0.9 1 23 379 401 379 401 0.99 9 13 8.7e-06 0.00064 20.0 3.5 1 23 407 429 407 429 0.95 10 13 4.2e-05 0.0031 17.8 3.4 1 23 435 458 435 458 0.97 11 13 2.6e-05 0.0019 18.5 1.0 3 23 466 486 464 486 0.96 12 13 2.8e-07 2.1e-05 24.7 1.5 1 23 492 514 492 514 0.98 13 13 1e-05 0.00076 19.7 3.8 2 23 521 543 520 543 0.94
Sequence Information
- Coding Sequence
- ATGGATGAGTCTTTGACTATAAAAACAGAAGCTTcatctcaaaaaaatgaagaaactgttattcttcaaaatattcCGATGGAAAGTGAAGAGGAAATACCCATAGTGTTTGGTGAATACATTGAGAATAACTCTGATGGAAATTTGCATATTAATAGTGTCCAAGAAGATGTTATCCACACTTACATAATACAGGAAGGAGAGTATAATAATATTGAGTATGAAGAAACAACAGTTGTGGAACAAGCAGAAGAAGATACAGAAAGTAATAGCAAAAAATTGGAATCACAAACTGAAGCAGAACCAGAACCTGAACCTGAAGTCGAAAATGATTCCAACTCTAtggaatttgaagaatttccaGAATCTGAAGAAGAACCTGCAGATCAAACTGATTGTGATGATCCTCACGATCAAGATTACGAAGGCGGTGGCGGGGATTATGAATGCGATTTGTGCCAACGAAAATTCAAAACCACTGCTgGTTTGAAAAGGCACATCACAGTTAATCATGCTGAAGAAGAGGATCTGAAAGATCCTTTAACGTTCCAACTTTGTAATTGTTGCGGTGAGCCAGTTGATTCCGCTCATACAaTTGGAGACTTCAAATGCGACAAATGTGACAAACTTTTTGTGCAACAAAACAGCTTAGATCGTCATTACAGCATTGAGCATAATGAAGGCAGTAAATATAAATGTGTGGAATGTAAGAAAGAATTTGAACACAAAGAAAATCTTATTGAACATATGAAAGTTCATCCATTGTCTAAATGTATTAAATGTCCTGATTGCAACAGAGAGTTCACGCGGAAATATCATTTAGATAGGCATATCGCTCAAACGGGATGCAATGGAGCCCCAAGAAAATCGTTTGTTTGTAAAGTTTGTAATAAAGTGTTTCATCGGAAAGATAACTTAGCTGACCATTTGCGAGCTCATGCAGGCCAAGGCAAAAGAAAGAAAGTTTTCATTTGCGAATATTGCCAAAAGGAGTTTTATGGTTCTGCTTTGCTCAATATTCATATTAGAACTCACACTGGCGAAAAACCTTATCCTTGCGACTTATGTCCGAAAAGATTCCCATCTAGCGGAGCAATGAAGAAGCATCGTCGGATGCATACAGGAGAGAGGCCTTACGTCTGCAGAGAGtgtaACAACAGATTCGCTGCTAAAGAGACTCTAAACCGCCACATGCGCACTCACACTGGCGAAAAACCCCATTCATGCCAATTCTGCGGCAAATCTTTCATCCAAGCGTCTCAATTACGCGCTCATATTTTCCATCACACTGGCGAAAATGCTTACACTTGTCCTCACTGCAATCGAGCGTTTAATCGCAAATTGCGACTTACAACACATATTAAATACATGCATGAAGGGGCAGAGCCAATGGCTTGTTCTCAATGCgacaaaacttttttcagaAAAGAAGATTTAGCTAGACACTTTTTATCACATACTGGAGAAAGACCGTTTGAATGTGAAATTTGCCACAAGTCGTTTGCTGTAAAGTCTTCATTGAAAATCCACCAACTGACGCATCGCAAAGAACCTCCATGTAGTTGCGACACGTGTGGTCGTGCATTTATTCGACAGGATTGTCTAATGCGTCATATGCGCGCTCGACATCGAGATGTTTTGGAAGATATAATGGCAAGTGCTGAGAAAAAACGTTTACAACAGCAGTTGTTGAACGCAGCTACGGAAGCTGTAGCGAAGAATCAAGGAAGTTTAACAGAAAATATGGTGTGGAATGAGTTGACATTAACTGAATCGATTAAAGAATTATTGACGATTCTTGTTGATGAAGCGTGTTTGCAAGATTTCGGTTTTCCAGACGCTCCTGTTGATAAGATTCTAGattcggtgataaaaagatgtgGACATAAACCAGCGTCCGAGGAGGATTTTGATTATATTGGAAGAATGAGAGAGAATGCCAAATTATTGTTTACTGTAGTTATAGATGATGAAGCTGTCAAGTCGTTGTTGAATAATCAGACTGTGGATGAAGTGATATTGCATGTCTTGAGGTTAGCTAAAGCTGAGAGTACTTAA
- Protein Sequence
- MDESLTIKTEASSQKNEETVILQNIPMESEEEIPIVFGEYIENNSDGNLHINSVQEDVIHTYIIQEGEYNNIEYEETTVVEQAEEDTESNSKKLESQTEAEPEPEPEVENDSNSMEFEEFPESEEEPADQTDCDDPHDQDYEGGGGDYECDLCQRKFKTTAGLKRHITVNHAEEEDLKDPLTFQLCNCCGEPVDSAHTIGDFKCDKCDKLFVQQNSLDRHYSIEHNEGSKYKCVECKKEFEHKENLIEHMKVHPLSKCIKCPDCNREFTRKYHLDRHIAQTGCNGAPRKSFVCKVCNKVFHRKDNLADHLRAHAGQGKRKKVFICEYCQKEFYGSALLNIHIRTHTGEKPYPCDLCPKRFPSSGAMKKHRRMHTGERPYVCRECNNRFAAKETLNRHMRTHTGEKPHSCQFCGKSFIQASQLRAHIFHHTGENAYTCPHCNRAFNRKLRLTTHIKYMHEGAEPMACSQCDKTFFRKEDLARHFLSHTGERPFECEICHKSFAVKSSLKIHQLTHRKEPPCSCDTCGRAFIRQDCLMRHMRARHRDVLEDIMASAEKKRLQQQLLNAATEAVAKNQGSLTENMVWNELTLTESIKELLTILVDEACLQDFGFPDAPVDKILDSVIKRCGHKPASEEDFDYIGRMRENAKLLFTVVIDDEAVKSLLNNQTVDEVILHVLRLAKAEST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00415305;
- 90% Identity
- -
- 80% Identity
- -