Basic Information

Insect: Latheticus oryzae
Gene Symbol: -
Assembly: GCA_030157265.1
Location: CM058052.1:16048037-16051987[-]

Transcription Factor Domain

TF Family: MBD
Domain: MBD domain
PFAM: PF01429
TF Group: Unclassified Structure
Description: The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 8.3e-12 1.4e-08 34.1 0.1 9 69 190 248 185 253 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	8.3e-12	1.4e-08	34.1	0.1	9	69	190	248	185	253	0.83

Sequence Information

Coding Sequence: ATGGAATCAACAGACAAAGACAAAATGTCAGCTGAAGATAACCCTAAAAGTGAAGAAACTTTAAACGGTGAAGGTGGTACTGAAAGCGATGTCTTAAGTGCTGGACACGATGATACTAGTGCTAGTGGAAAATCAGTTGATGACACACCTAAAGTACCCGaggaaaaaactgaagaaaatgcTAGTGACAATAAAGGGAAAAAGCGGAAGTTGAATGAAGCTAAAGCAGGAGATGAAAGTGCGTCTGAGGATAGTGCAGCTGATGTGAAAGAATCTTCAGAAGTTGGTTCAAAGACTGAGAAAGATGATTCTGCGAATGAGTCGTCGACGGATTTGACAATGCCACCGAAACAAACATTGGGAAAAGGGAAACGAGCAAGGATACCTAATAAACGATACAGTGATATCTTATTATCACCTTTACCAAAATCACACAAAAGCCATATTGAGAACGGTGATAAAGCAGACACAGACAATGACacaaaaaatgaagatttgTCAGGTGCGAGTAGTCCGGTAAATAAAAAGCTCAAAACTTCAATAGATCTTTCAGATCCTAAATATTTAAAGCCATTTTCGCGCGGGTGGAAACGCGAACTAGTGTATAGGGCCACATATGGCAACGCCACCAAACGTAACGGagacatttattattataatccAGCCGGCAAAAAATTGAGATCTATGCGAGAAATCTCAGATAATTTAGACGATCCTGAATTATCTTTggaaaatttcacattttttaaagaaCCTATAGGTTTGAATGATCCTGAAAAAGAGATAATCAGAGACGCTAAAGCAATCAATAGGAAAGCTCCTGCAAAAGGATCAAAAACACCGAAAGTTTTGAGTCCTGAATTGCCAGCTTCTAAAGCTGCGTCTTCAAAAAGCTCAAGTCCAAAAGAAAATCCAGAACCTGTTGTTCCAACGAGGAAATCAAACCGCAGTACCGCTGGAAATATCAAGaatttccaGATTAAGTTGACTCCTAGCAGAAATATTCAACcgaaaaagaacaaaatggaaggtgAAGCAAGGGATACCGAGTCGCCGCCGGCGAAACGCGTCGCTAAAAAAAAGACTCCAGCGAAAATCAATGTAGAAATGGAGGACAAACCCTGTCAACCATGTTCCATTCGATGCCAAGGTGTTTTGGGTATGGTACCGACACTTCAATGTCGACTTTGTTTATGTCTCTACCATTATGAATGCGTTGGATTGTCGCCGCATGTGCAGATACAAGAATATGTCTGTAAGAATTGTCGACTGGAACATGGTCAGAACGTCGCAACGTCGACGTCGATCATTCTGCCTCCTCTCACTCCTATAAACACTTTGAAACAAATGACGACTCAGTCGACAGTTTTACCAACACTGCAACGTATACCGCGTCCATCCGATTCACCTCAACAGGAAGTAGCAATTCCTGGTGGTGTTATGCCAAATATGCCACGTTTACTCCCATTACCAAAAGTAGCAAAAGATGCACCTCAACCTCCGAAATCGaataaaaatctacaaaacatCGAAACGAAAAGTTTAGTCGGTTCTGTAACTACGTGGCTACCGCATAGTTCAACAATTCAAGTTGATagcatgcaaaaaaataaagaaaatgaacCAATGGAAGCACCGAGACCGCAATATGTTGAATATTTAGCAGGAAGGAAGTTTTTGATTATACCGAAACATAATATAGTTTCAATATCGCCAACAAGCTTGCCAACTAAACAGCTGAAACAAAATGATAGTGGCTGTGATGAAAGCAAAGATGAAGCGTTTTCATCGCCGAGAAATGAACAAACTGATAGTGATAGGAAGGTTGAGGAAGATAACATTGAGATGACGAATAAAACAAATGAAGAGAAGAAAGatgatgaaaataaaacagaAACTGTTGAATCAGCGAAACGTACACCTCGATCTAACAATCTCAAGACTAATATTAAAGttgaagaatctaaatttATGGAAAACTATCTACAGAACGTTTCATATGGTTATAATACACTTTTATACGTTTTCCAATATTTGAAAGTGCAAGATTTATTGAAAGCTGGATGTGTGTGTACAATGTGGAGGCATCTTGCGAATCACCCAACGTTATGGAAGACTGTAAGAATGAAAAATTCGCAAGTACACAGTTTTGAAGGTTTAGCAAATGCATTAGAAAAACATGGTACGGTACATTTAGATTTAAGAAAAGTGCTTTTGCCATCAAAAGAAGACCATGAAATTTGGCCGGAATTTTCTAAAGCTATAGAGAAAGTACAAACGCTGAGAAAAATCGAATTGTGCAGgtGTCCGGCTTCTGTGGTGGAGCAGTTGGCTGTAACAAATAAGGATTTGGAAGTTATCAATGCAGTTAcaataaaatgtgaaacatTAAATTTAGATAAGATATCatctttgaaaaatctaaaagaactGCGTTTGAAATCGCCCAGTAGTCTTACTCTAACTTCTGATATCACATCCCTAGAAGAATTGACAAATTTGAAACATCTCTCATTAACATCTATCAAAGACTTGtacaaaatgaatttaaaagtATTAGCAGCGTTGAAAAATCTCGAATCGTTGGATCTTGGCGAATGTAGTGATTTCCCATCAAATTTTGGTGAAGATATTTTGATTAAGTTAACAAAACTCGAAAAGTTGCGACTGGAAAAAGGTCAAGGCACTTGTCacacatttaaaattttggatGCTGTGAGGCAAATGCCACAATTGGAACAGTTAGAGTTGGtcaattttgatattaaagcAGGATTCGATGTAGCTTTAGGAAAGTGTAGCAATATAAAGAAGTTGTTAATTATTCCAACTTATCTGTCTCAGAGTGCCACAACGAATCATATGTTATTAGGAGGTGTATATAAATTGCAACAAACGCTAACGCACTTTGTTTGGGGTGTTACGTTAGAATTGTTACGGGTAACAGAATTGTTTGTTGATCAGTCTGAAAATCCgaataaaaaagagaaaaaggaAAAGAAATCTGGAGGAAATGGGGATAGTATTCCTGTTATGGAACCAATACCGTTACATACTGATAAGAATGGTAGTCTGCCCCCAGCACATGATCCTCCTCAAGTTGAAATTATAAGATTACCAGATCTACAAAAGTTGCTATTGCAGAGTTTACCAACAACCAGAGTGAAGATCCTCAAAATTCCCTTTCATGCTACATGGAGACAAAGTATCACAGATACGGTTAACTAA
Protein Sequence: MESTDKDKMSAEDNPKSEETLNGEGGTESDVLSAGHDDTSASGKSVDDTPKVPEEKTEENASDNKGKKRKLNEAKAGDESASEDSAADVKESSEVGSKTEKDDSANESSTDLTMPPKQTLGKGKRARIPNKRYSDILLSPLPKSHKSHIENGDKADTDNDTKNEDLSGASSPVNKKLKTSIDLSDPKYLKPFSRGWKRELVYRATYGNATKRNGDIYYYNPAGKKLRSMREISDNLDDPELSLENFTFFKEPIGLNDPEKEIIRDAKAINRKAPAKGSKTPKVLSPELPASKAASSKSSSPKENPEPVVPTRKSNRSTAGNIKNFQIKLTPSRNIQPKKNKMEGEARDTESPPAKRVAKKKTPAKINVEMEDKPCQPCSIRCQGVLGMVPTLQCRLCLCLYHYECVGLSPHVQIQEYVCKNCRLEHGQNVATSTSIILPPLTPINTLKQMTTQSTVLPTLQRIPRPSDSPQQEVAIPGGVMPNMPRLLPLPKVAKDAPQPPKSNKNLQNIETKSLVGSVTTWLPHSSTIQVDSMQKNKENEPMEAPRPQYVEYLAGRKFLIIPKHNIVSISPTSLPTKQLKQNDSGCDESKDEAFSSPRNEQTDSDRKVEEDNIEMTNKTNEEKKDDENKTETVESAKRTPRSNNLKTNIKVEESKFMENYLQNVSYGYNTLLYVFQYLKVQDLLKAGCVCTMWRHLANHPTLWKTVRMKNSQVHSFEGLANALEKHGTVHLDLRKVLLPSKEDHEIWPEFSKAIEKVQTLRKIELCRCPASVVEQLAVTNKDLEVINAVTIKCETLNLDKISSLKNLKELRLKSPSSLTLTSDITSLEELTNLKHLSLTSIKDLYKMNLKVLAALKNLESLDLGECSDFPSNFGEDILIKLTKLEKLRLEKGQGTCHTFKILDAVRQMPQLEQLELVNFDIKAGFDVALGKCSNIKKLLIIPTYLSQSATTNHMLLGGVYKLQQTLTHFVWGVTLELLRVTELFVDQSENPNKKEKKEKKSGGNGDSIPVMEPIPLHTDKNGSLPPAHDPPQVEIIRLPDLQKLLLQSLPTTRVKILKIPFHATWRQSITDTVN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -