Lory000638.1
Basic Information
- Insect
- Latheticus oryzae
- Gene Symbol
- bab2
- Assembly
- GCA_030157265.1
- Location
- CM058048.1:7600301-7603106[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.8e-17 2.8e-14 52.5 0.0 2 42 361 402 360 405 0.95
Sequence Information
- Coding Sequence
- ATGACAATGCAACAGTATTGTTTACGATGGAACAACCATCAACCAAACTTCATTTCAGTGTTTTCTAGTCTTCTAAACAGTGAGTCGTTGGTTGACGTCACATTAGCTGCTGAAGGCAGGCATCTGCAAGCTCATAAAGTTGTCCTGTCTGCTTGCAGTTCGTATTTTCAATCTTTATTTACCATTAATCCTTGCCAGCATCCCATTGTGATATTAAAAGATGTAAAATTTACTGATTTAAAAGTCATGGTAGACTTTATGTATTATGGTGAAGTAAATGTTTCACAAGAACAACTACCACACATTTTAAAAACTGCAGAAATGTTAAAGATTAAAGgaCTGGCAGAAATACCTGTTGATCAATCTGTTTCAAAGACACAAAACTGTTCAGCTGATAAGGCTGAGCTTTTGACTCCAGGGGAAACAAATTGGAGCACTGATGGCCCAAGACAGTCCTTATCGCCATCGCCTTGCCCGCTTTCTCCTAGCAGCAAAAGAAAAAGGTTGAGAAAATCATCCACAGGATCAGGATCTGGATCGACTGAAAGAACCTCAGATGAACACCAGTCCAGTGAAGTGACATTAACATCTTCAGGGGGTAGTGGATTAGGCACAGTCATAAAATCGGATCCAGGAGGTTATTCATCTGATAGTAGCAGTATATTACAAAAAAGTAAACAGCACAGTAGCGACTCAGAATTACATAGAGGAAGTTCACATGAAAGTGTTGAAGGGGATATGACCCATCACGTCACATTACAAGTTCCACAAGAAATGAATGTTCCACATGGTCTGGAAGCAGGGGGATCCGGTGAAGTTGCAGGTCCTTCTACAACTTCTCAGTTGACTTTGACAGGCATGCAATGGAACGTAATGGATCACACCGCATACGCCCAGTTCACTTCATATAGTTCcccaaattctttaaattcaaatcaacCTTTTACTCAATGTCCATCAAATATAACTCAACCAATCAATCCTTCATCACCTTCCAATGCCCAATgttatcaaaatcaaataacAAAGGCTCCACCGCAAATCATTCAAAAACGTAAAAGAAGTATCAATCCACAAggagatgagaattttataagagCATTGGAGGCTGTGAGATTCGGAGGAATCGGTTTCTGTAAAGCTGCAAGAATATATGGTGTTAATAATCGAACATTGTGGTTGGAATACAAAAAACGAGGGTATCCTAATTTCCGACTAAGCATTAAAAGTAGGAAACAAGAAAGTGATGATGCGGCTGCAGCGGCAGCAGCTGctgcaacagcagcagcaacAGCAAATGAAAATAATCAGCAACCACCTCCAAGTCCACAAACCGAAGCTACATCAATAGAAAAACAAGAAGTTGAACAAAATCATCCTGTTGCGTTGATTAGTAGTTCGTTTTTTGATGGCAAACATGTGGATTTAGGGACGGTCCTCCAAAGACCTAAGTATTTAGATGCTGCAGTTATTAATGCTCAGCAAGGAGTCAATTTTCAAGGaatcaattttgaacaaatgtaa
- Protein Sequence
- MTMQQYCLRWNNHQPNFISVFSSLLNSESLVDVTLAAEGRHLQAHKVVLSACSSYFQSLFTINPCQHPIVILKDVKFTDLKVMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAEIPVDQSVSKTQNCSADKAELLTPGETNWSTDGPRQSLSPSPCPLSPSSKRKRLRKSSTGSGSGSTERTSDEHQSSEVTLTSSGGSGLGTVIKSDPGGYSSDSSSILQKSKQHSSDSELHRGSSHESVEGDMTHHVTLQVPQEMNVPHGLEAGGSGEVAGPSTTSQLTLTGMQWNVMDHTAYAQFTSYSSPNSLNSNQPFTQCPSNITQPINPSSPSNAQCYQNQITKAPPQIIQKRKRSINPQGDENFIRALEAVRFGGIGFCKAARIYGVNNRTLWLEYKKRGYPNFRLSIKSRKQESDDAAAAAAAAATAAATANENNQQPPPSPQTEATSIEKQEVEQNHPVALISSSFFDGKHVDLGTVLQRPKYLDAAVINAQQGVNFQGINFEQM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00852954;
- 90% Identity
- iTF_00870686;
- 80% Identity
- iTF_00870686;