Lpla007948.1
Basic Information
- Insect
- Lasius platythorax
- Gene Symbol
- -
- Assembly
- GCA_963971435.1
- Location
- OZ020536.1:20060691-20062522[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7e-11 1.1e-07 33.0 0.0 4 36 23 55 20 62 0.88
Sequence Information
- Coding Sequence
- ATGGAGAAAGGGAAGAAGTCCCAAGTCAAAAAGAAATCTAAACAAAACATGAATTACAATGATCAAACGATGAAACTAGCTTTACAACAAATTAGCGAAGGGATGTCCGTAAGCAGCGCTTCGAAAGCATTTGGCGTTCCCAGAACTACGCTTCAAGATAAGAAATTTGGACGACATCAACGATCAGTCGGAGCTCCTACTATATTGACACAAGATgaagaaaaagtttttacCAATTGGATAGTCGAACTGGGAAAGCAAGGATTTCCAGTAACAAAGAATCAACTCTTGTACAGTGTTTCCAAATACATGGCAGAGAACGGACGAATCAATTATTTCAAGGATGGAATTCCAGGGCGCCGATGGTATGAAGGTTTTTTAAATCGCCACAAAGAAATATCCAAAAGAGTACCTCAAAATTTATCGACGGCTAGAGCAAACATAAGTGAAGAAGGAGTTCGAAATTGGCATGCAAAAATCAAGAActtttttgaagaatatgGTGATCTTAAACAGGTTTTAACTTGTCCCAATCGCATTTTCAATTGCGATGAGACAGCTTTTTACCTTTGTCTAAAAGATAAATTCATTCTCGCCAAAAAAGAATCTAAACAGATTTATAGCAGAACAACTAATGACGAAAAGGAATGCCTGACAGTTCTTATTGGAGCATCAGCTACTGGATGTTTAATACCACCATTAACTCTGTTCCCATACAAACGCATGCCACAGAATATTGTTGCGAAAATGCCCAAAAATTGGGGAATAGGGAGAACCGACTCAGGTTGGATGACATGCGAGCCTATGGATGTATCCCTGTTTCACCCCCTTAAGAGCgagtggaaaaaaataattcatgaatGGCGGATCAATAATAACGGTGAACGCCTAAAAAGAGAGGATTTTTCAGGTTTAGTTAACGAATGTTTGCAAAGAGCAGCTAAACCAGAAACGATACGCAATGGTTTCAGGATCTGTGGATTATACCCATTCGATGTGAATGCAGTGCCTTTtgaaaaactattaaaaactACAGCCGATGATTCAGAAAAAACAGAAAGTGAAGAATCAGAgccaagagaaaaaaatgaagaagataaTCGCTCAATTCTGTCATTCATTGAAAGTACGATAGGAGTCGAAAGATTAGAAGAGTTCAAGAGATGTGAAAAGGATCAATGGAATGGCCAAACGAAAGATGAggaaaataatcAACAAAAGCATAATACAACACTCgaagcaaatataaatttttccgcCCTTGAACTTGATGAGAATTTTGCTGCGAACGGTGTAATCGACTTGGACATAAATGCAGATGGTTCAGTTGTGATTTCGACACCAAAATCAAGCTGTGCAGATACTCTACAGATTTTCCAACAATTTGATGACTCACCGATCTCCAACCTAACAGAACAACGAGATGAAAATGCCAACAACCtcgaaaattttgataaacaaACACCGATTactcaaaaaaaaagaatttcatcTCTGTTCAAAAATGCTCTTTTTTGGCCAGACACCCCAGTTTCAACAACCAAATCTGGAAAAGTTAAACGGAAGATAACTCAGTAG
- Protein Sequence
- MEKGKKSQVKKKSKQNMNYNDQTMKLALQQISEGMSVSSASKAFGVPRTTLQDKKFGRHQRSVGAPTILTQDEEKVFTNWIVELGKQGFPVTKNQLLYSVSKYMAENGRINYFKDGIPGRRWYEGFLNRHKEISKRVPQNLSTARANISEEGVRNWHAKIKNFFEEYGDLKQVLTCPNRIFNCDETAFYLCLKDKFILAKKESKQIYSRTTNDEKECLTVLIGASATGCLIPPLTLFPYKRMPQNIVAKMPKNWGIGRTDSGWMTCEPMDVSLFHPLKSEWKKIIHEWRINNNGERLKREDFSGLVNECLQRAAKPETIRNGFRICGLYPFDVNAVPFEKLLKTTADDSEKTESEESEPREKNEEDNRSILSFIESTIGVERLEEFKRCEKDQWNGQTKDEENNQQKHNTTLEANINFSALELDENFAANGVIDLDINADGSVVISTPKSSCADTLQIFQQFDDSPISNLTEQRDENANNLENFDKQTPITQKKRISSLFKNALFWPDTPVSTTKSGKVKRKITQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00385208;
- 90% Identity
- iTF_01245144;
- 80% Identity
- -