Lnig001675.1
Basic Information
- Insect
- Lasius niger
- Gene Symbol
- prdm10_1
- Assembly
- GCA_001045655.1
- Location
- LBMM01000872.1:14662-18541[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00017 0.018 15.5 0.2 2 23 521 542 520 542 0.96 2 10 0.0005 0.054 14.0 0.1 2 23 555 576 554 576 0.95 3 10 0.011 1.2 9.7 3.3 1 19 593 611 593 615 0.93 4 10 0.00024 0.026 15.0 0.3 2 23 624 645 623 645 0.97 5 10 0.0029 0.31 11.6 0.3 1 23 652 674 652 674 0.98 6 10 0.00057 0.061 13.8 4.2 1 23 681 703 681 704 0.95 7 10 0.0015 0.17 12.4 4.6 1 23 709 731 709 731 0.98 8 10 4.3e-05 0.0047 17.3 5.6 1 23 737 760 737 761 0.95 9 10 3.3 3.6e+02 2.0 4.1 1 16 793 808 793 824 0.85 10 10 0.0025 0.27 11.8 3.4 3 23 862 883 862 883 0.98
Sequence Information
- Coding Sequence
- ATGGATCCAAGGGGCCCTCCTGAGGGGGCCCCTGCCGAGTCTTTCGAGATATCCAGCATCGACAAGGGGGCTGACACCTCGGTGAATTGGCCTATTGATCACGCTTTCGCTTCATCCTTGTGCGAGCAACCGAAAAAACTGAACAACaggcttttatttttgacgGTGGAATATGTGGAGGATCAATCCCGCCTATTTCCCACATACGAACAGATTTCCCTCTCTCCAAGGGCAGCTTCACCTCTGTCCGAGTTTGAGCATCGCGTCAGTCCGCTTGATCCAAACATGAGTTCTGCCGCTAGATACTCTCCCACACCGGTCCAATTACCTTCTTCCCCTTTCCACAACTCTGTTGTTGTGCTTCAAGGCCCGTCCTCTCCCTTGATATCCCAGCCTGAACCAAATATACGTACGAGCATCAATTATGTGACTCAACTGACCCATCCGATCGATGCTCAAGTTGTACCTCAAGCAGACGCTACCGCAGACTTTGTTGGCAATGGGAATGAAGAGGGGCTGGTGTCGAGTGTCAGCAGTGAATTGATTTTAATGCAAGAAACTACACCCGAGTTGGAATCTTCAGCAACTCCCTTAATGCTAACAGGAATACCGGGTACAGACTTCACTTTGACTAGAGATTTCTTGGTCATGCAAGATGATCAAATAAACGTTATcaacacatttaaaaatcaaaatatagagATAGAAAACAGTCATGTTGCTTTACCATCTGTAATAGAAGAcgcaaacaaagaaaataacaatctTATTATACCAGAGTGTGATAAAGAAATTCAACAAATTACTAAGAATATATCACCTAGCGAAAAGAAGAAACCAATTGAGAAAAAAGATGTAAGGAGATCAAAACGACATATAacagataaaaagaatttgtGGTGCGACGAATATGACAATAATTGCACCAAAGACGACAGCTGTAATTTAAACGATGTGTGTACAATCGCAGATCAACCAGTACCATCGCGTGCTGTAGCAACACTGCCAGGATCATATCTTTCGTTAAACAAGTTATCTACTTCACAAGCTACAGCCGATGGCGTGACCTATGGAGTCTTTGCAAAACGTTATATTCGAAGACGCACGCAATTTGGACCTATAGAAGGTGTATTGTGCGCTTACGACGGCTCGCCCTTCGAAGATGCTTTACCACTACTCTACGAAACTGAGAATGGTGAATTGTTTCAAGTAGATGTTTCGAACGAAAatactTCAAACTGGATGCGTTTTGTGCGGCCTGCCCTAACATACAAGGagcaaaatttaatcatttgcCAGCAGAAGGACGGAATAGTGTTTCTGACTAATAGAAACATTTCGCCAAAGGAAGAATTAAAGGCAGGTCCTAGTGCAGACTATGCAAGTCGCAgaaatttgtcaatatttaaaCCAGATGAAAAAGaaGTTGCTAATCAAATTTCCATATGGCCGCGTTTGGATGGCAATTCTTACAACAATCGACGCGTAAAAATGTTTCGTGGcagaaatatgaaagaaaaagaaaactcgcGGCAGAACAACAAGTGTAACAAGGAATGGAAATGTTCTGTGTGTAATCTGATTTTCAGAAAACCGTCTCTGCTGAACTTACACACAATCGTTCATTCTTCCAACgatatcaaaattgaaaatcaaaCGTCCGTGTGTCCACAATGTGGACTGGAATTCCAGAAGCAAAGTGAGTTGGTGAATCACGTATCTCAACATGGGCGATCGGCACTACCCAAAACGAAGAGATTAACTCCTCTAAGTACATACAAGTGTTCAATGTGTTATAAACGTTTTGCTACGAAGATACGATTACAACAGCACTGCTTGGCGCATGGTGCTGAGGACCAAAAACCACTGCCATGCAGCATTTGCTTAAAACGATTTATGAACAACTCTGCATTGTCTGGTCATCTGAAAACGCATAAAGaaaataaGCAGGTCTTTGAGTGCCCAATGTGTAGGCAGCTTTTTCGCCAAGGTACAATGCTGAAGGATCATGTTGAGACGCACAGAAATCAAGACGGTATATTCAGCTGCCCCCACTGCCAGCGAACATTCATCAAGTATTCAGTTATTCGCAAACACATTCGAGCACATCATTGCGAAAGAAAGCACAAATGTCAGCATTGTGCAAAACGTTTTCCGACAGTCGACAAATTGCGAATGCACTTGCTGAAACATTCCGATCACAGAGAATTTCATTGCGCCAACTGTGGTAAGCAATTCAAAAGAAAGGATAAATTGAAGGAGCACATGACTAAAATACACCACTCTCAAACAGTTAATGGAGAACAAATGACACAGAGCAACCAAGCGAAGAAATTTGTGCCAAAGGTAAATCCGAACGACTACAATCGCTTCATTTACAAATGCCATCAATGTCTGGTGGGTTTCAAGCGAAGGGGAATGCTGGTTTATAAAAGTAGCAGTAAACGTAAGGCGCATATTATGAAGAACCATCCGGGTGCGGCCTTGCCACCTAGTAACCGACAAAAGGAATCGGAATTCTCGGGACTGCCGAATCCGAGCTTCAGCCAAACAGTGGGCAGTGTCACGACTAGTCCTCAAGGTTGCCAGTGGTGTCACAAACAGTATGCCAGCAAGgCGAAACTCTTGCAACATCAACGCAAGAAACATGCCCATTTAATGGAGCCGGCGGATCAAATACCGCGATCGCGGAACCGGCCTCCGCAAAATCAAAATCAACCACCCGCGCTGAACGATAACAACTTTGTGATATCCGATTACATACAAGGATGCGACGTAAACGGGGATTTTCTCaagcaaaaaataatcaaaatcacGAACGACGTTGATCTGATAGGCAACGGTGGTCTAGAGATGGTCGGCCAGCAGTTTGTGCGTATGCGCGACATACGTTGA
- Protein Sequence
- MDPRGPPEGAPAESFEISSIDKGADTSVNWPIDHAFASSLCEQPKKLNNRLLFLTVEYVEDQSRLFPTYEQISLSPRAASPLSEFEHRVSPLDPNMSSAARYSPTPVQLPSSPFHNSVVVLQGPSSPLISQPEPNIRTSINYVTQLTHPIDAQVVPQADATADFVGNGNEEGLVSSVSSELILMQETTPELESSATPLMLTGIPGTDFTLTRDFLVMQDDQINVINTFKNQNIEIENSHVALPSVIEDANKENNNLIIPECDKEIQQITKNISPSEKKKPIEKKDVRRSKRHITDKKNLWCDEYDNNCTKDDSCNLNDVCTIADQPVPSRAVATLPGSYLSLNKLSTSQATADGVTYGVFAKRYIRRRTQFGPIEGVLCAYDGSPFEDALPLLYETENGELFQVDVSNENTSNWMRFVRPALTYKEQNLIICQQKDGIVFLTNRNISPKEELKAGPSADYASRRNLSIFKPDEKEVANQISIWPRLDGNSYNNRRVKMFRGRNMKEKENSRQNNKCNKEWKCSVCNLIFRKPSLLNLHTIVHSSNDIKIENQTSVCPQCGLEFQKQSELVNHVSQHGRSALPKTKRLTPLSTYKCSMCYKRFATKIRLQQHCLAHGAEDQKPLPCSICLKRFMNNSALSGHLKTHKENKQVFECPMCRQLFRQGTMLKDHVETHRNQDGIFSCPHCQRTFIKYSVIRKHIRAHHCERKHKCQHCAKRFPTVDKLRMHLLKHSDHREFHCANCGKQFKRKDKLKEHMTKIHHSQTVNGEQMTQSNQAKKFVPKVNPNDYNRFIYKCHQCLVGFKRRGMLVYKSSSKRKAHIMKNHPGAALPPSNRQKESEFSGLPNPSFSQTVGSVTTSPQGCQWCHKQYASKAKLLQHQRKKHAHLMEPADQIPRSRNRPPQNQNQPPALNDNNFVISDYIQGCDVNGDFLKQKIIKITNDVDLIGNGGLEMVGQQFVRMRDIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00885376;
- 90% Identity
- iTF_01523591;
- 80% Identity
- -