Basic Information

Insect: Lasius niger
Gene Symbol: -
Assembly: GCA_001045655.1
Location: LBMM01010643.1:151-5003[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 2.3e-05 0.0025 18.2 1.4 1 23 455 477 455 477 0.96

2 8 8.2e-06 0.00088 19.6 1.9 1 20 483 502 483 505 0.94

3 8 5.7e-06 0.00061 20.1 1.4 1 23 511 533 511 533 0.98

4 8 3.3e-05 0.0036 17.7 4.4 1 21 539 559 539 561 0.95

5 8 4.5e-06 0.00048 20.4 5.6 1 23 567 589 567 589 0.99

6 8 1e-05 0.0011 19.3 5.3 1 23 595 617 595 617 0.97

7 8 3.9e-05 0.0041 17.5 6.9 1 23 623 645 623 645 0.96

8 8 3.2 3.5e+02 2.0 0.3 1 7 651 657 651 658 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	2.3e-05	0.0025	18.2	1.4	1	23	455	477	455	477	0.96
2	8	8.2e-06	0.00088	19.6	1.9	1	20	483	502	483	505	0.94
3	8	5.7e-06	0.00061	20.1	1.4	1	23	511	533	511	533	0.98
4	8	3.3e-05	0.0036	17.7	4.4	1	21	539	559	539	561	0.95
5	8	4.5e-06	0.00048	20.4	5.6	1	23	567	589	567	589	0.99
6	8	1e-05	0.0011	19.3	5.3	1	23	595	617	595	617	0.97
7	8	3.9e-05	0.0041	17.5	6.9	1	23	623	645	623	645	0.96
8	8	3.2	3.5e+02	2.0	0.3	1	7	651	657	651	658	0.90

Sequence Information

Coding Sequence: ATGAATAGTGAGCAGCATGCATTGCCAGCGACTACGCAGGCACAACAAGAGGATGTAAATGCGGGTCAAAGTGGTCGTCCATCATACCCAGGTGGTTTGGCTACTGCGACCGCGAGTCTTGGCAATGTAGGGAGTACCCCCCATTCATCCGCGGACCTGCGTGTAGGTACTGCCGTAGCGTTAGCCTCCTCGGTAGCTAAGTATTGGGTCCTCAATCTTCACGGATTGCTTCCTGGAACGCTACCTCAGGTCTCGGTCTATCATTCCCACCACAACTCCTCGCATAGGAGTGGTGGCGGTGGGGAGGCGTCATCCTCCAAAGAGTCAGCCTCTTCACTGAATCAGGAAATGGCGTTGACTTCCAGCTCGCATCATCAACAGCAGTCTACAGCCgcgcatcatcatcatcagccATCGGTTAGCAGCAGCAGCCACCACAGTTCTCTGCAATCGAATCCGCAGATTCCCGTATCTCTTCCCGGCCTTAATTTAGACGGCGCGCATATACCAGCGAGCGTTAGTCACCTGCAGGCTGCGCATGCACAAATGCAACAACAAATGCAGGCACAAGCACAGCAGCAGCTgcatcagcagcagcaagcGCAGCCgccgcagcagcaacagcagcaacagtcCCATCACCAGATGCCAAATCATCAGAACGCCCAGAACAACGGACCGACTGGACACAGCCAAAACGCGCAGCGAGACGACAACAAAGTCAAGGACGAGGGCGGTAGCTGCACCACCGAGCGCTGCAGCGACAATCAGGTTCACTGTCAAGTTCAATGCGATCTGCAATTACAACCACCGCAAGATCTTCAACAGAGCTTGatgcaacagcagcagcagcaacaacagcagcagcagcagtcgCAGATCGGGGTCAACATCAGCGGGAATTCCACCACCGAGGGGGGAAGTCAGAACAATTCTGAGAAGCCCGAGAAGGAAAAGGAATTGCGGCAACTGAATATGACTCAATTCCAAGTCCCTGACTTGAAGCCAGGAGGACACATGATGGATGTGAGAACGGCGGACGGGTCGGTTGTGAAAATCAGCGCGGGAAACGAGCAGGATTTGGCGAAAACTCTCGGCGTCGAAATGGTACAAAACATGTACAAGGTGAACGTTGAAGATATTAACCAACTCCTAGCTTATCACGAAGTCTTTGGAAAGCTACAAAGCGAAATCGCGGCTGGAACGACTCTAGTGGGTAGCACTGTTCCTACGCAGACAGTTACCACGATACAGAATGGTACTCCAATCGTGCAACAGGTACCACTGAACAAATTTGACATAAAGTCGAGTGATGGCGAGGCGACTCCCGGTCCAAGCGCGTCGCCCGTGTCGGTTGGCAGCCACGCTTGCGAGATATGCGGAAAGATCTTTCAATTTCGTTATCAGCTCATCGTGCATCGCAGATATCATACCGAGAGAAAACCGTTTACGTGTCAGGTATGCGGTAAAGCGTTCTCGAACGCAAACGATTTGACGCGTCACGGCAAGTGTCATTTGGGTGGATCCATGTTCACTTGCACAGTCTGCTTTCATGTTTTTGCGAATGCACCTTCGCTGGAACGTCATATGAAGAGACACGCCACTGACAAACCGTACAATTGTACAGTCTGTGGTAAGAGCTTTGCACGCAAAGAGCATTTGGACAACCATACGAGATGTCACACCGGCGAGACACCATACAGATGCCAATATTGTTCGAAGACATTTACCCGAAAAGAACACATGGTAAATCACGTACGCAAACACACTGGTGAGACTCCACATCGATGTGATATTTGCAAGAAGAGCTTTACTCGCAAAGAACACTTTATGAACCATGTTATGTGGCACACAGGAGAAACCCCTCATCATTGCCAAGCCTGCGGCAAGAAGTATACACGTAAAGAGCATCTCGCTAACCATATGCGCTCGCACACGAACGACACGCCGTTCCGTTGTGAAATATGCGGTGAGTGa
Protein Sequence: MNSEQHALPATTQAQQEDVNAGQSGRPSYPGGLATATASLGNVGSTPHSSADLRVGTAVALASSVAKYWVLNLHGLLPGTLPQVSVYHSHHNSSHRSGGGGEASSSKESASSLNQEMALTSSSHHQQQSTAAHHHHQPSVSSSSHHSSLQSNPQIPVSLPGLNLDGAHIPASVSHLQAAHAQMQQQMQAQAQQQLHQQQQAQPPQQQQQQQSHHQMPNHQNAQNNGPTGHSQNAQRDDNKVKDEGGSCTTERCSDNQVHCQVQCDLQLQPPQDLQQSLMQQQQQQQQQQQQSQIGVNISGNSTTEGGSQNNSEKPEKEKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPIVQQVPLNKFDIKSSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFSNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00765890;
90% Identity: iTF_01354830;
80% Identity: -