Lnig016174.1
Basic Information
- Insect
- Lasius niger
- Gene Symbol
- topi
- Assembly
- GCA_001045655.1
- Location
- LBMM01003238.1:9082-13502[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.22 23 5.7 1.8 1 20 409 428 409 431 0.81 2 16 0.064 6.8 7.4 1.1 2 23 438 460 437 460 0.95 3 16 0.0029 0.31 11.6 0.1 2 21 467 486 466 487 0.92 4 16 1.5e-05 0.0017 18.7 0.8 1 23 494 516 494 516 0.96 5 16 2.6e-06 0.00027 21.2 2.8 1 23 522 544 522 544 0.98 6 16 4.5 4.8e+02 1.6 0.9 2 23 556 577 555 577 0.80 7 16 0.0017 0.19 12.3 5.7 1 23 593 615 593 615 0.98 8 16 0.4 43 4.8 0.1 1 23 621 643 621 643 0.95 9 16 0.19 21 5.9 1.4 1 23 653 676 653 676 0.94 10 16 0.027 2.9 8.5 0.0 1 21 690 710 690 711 0.93 11 16 0.0029 0.31 11.6 0.1 1 23 716 738 716 738 0.98 12 16 2e-06 0.00021 21.5 3.1 1 23 744 766 744 766 0.98 13 16 0.00013 0.014 15.9 0.4 1 23 772 795 772 795 0.97 14 16 0.048 5.1 7.8 0.7 1 23 801 823 801 823 0.88 15 16 3.2e-07 3.4e-05 24.1 2.2 1 23 829 851 829 851 0.99 16 16 6e-06 0.00065 20.0 4.9 1 23 857 880 857 880 0.96
Sequence Information
- Coding Sequence
- ATGGATAAGCAcgataataagattaatctAGAAGAAATAGTTGATAGGCAATACGAGAGATTAAATGAACTCAATATGACTACAATATTGACAAAAAGTAAACACAATATAAAAGATGAACTTCAAGGAATGCGTAACAAAGTAATGCAAGTTTCGTGTGGTATTGAGAACATGAGGAAAATTTTGGAGAGAATGAAAGAACAGAATGCATATTCTAGaGAATTATTGTCATTGCTTGAAACtttgaataaaagaatttcacACCAGAAAGAGAATGTTCCACCGGAGCTTATACAAGGTTACCAGAATGCTGATAAGCAAGGATGCATTCAAACTCAAATCTCTCCTGCTATACCAAAAAGTATTATCAATTCAACACACAAATTGATAGGGCAAAAAATATCTgataatatgtacaataatgatattattgaaGAAACAATGAAAGACTGTAAAAGAGCACTTTTCAATGAACCGGAACTACAAAATATGTTCAAAGCGGAATCAATTAGTACATTAAGTGATCCTGAAGATGATATTGATGATTTGGATGGTTCTATTGTATGGTCCCAAGAAGAAGCGCTTTCTTCCAacgaaatattagaattatcgGCTCAAGATGAGAGAGAAGATAGTTTAGCTGCTTTCTGTCGATTGTGTGCTGGTCAAACTAATaatccaatatatatatattctgaacTCGGGGAATCAATGAAATTggcacataaaataaatacatgtcTAAGTGTtaagATTAAAAAGACAGATCCATTACCGAAACAGCTTTGTTTGACCTGTATCGAGAAAGTAAATTGTTACGACGGGTTTGACACACAATGCATTAAAGCAGAGGAAATCCTCTTGACGATGCTGaaggaaaaacaatttttcaatgctTCCAATTacgaaaatcaaattttatctgaCCGACAGTCTTGTCCCTTATGTATAGAAGGCTACATGAATACATGTGAAAACATGTCCCAGCATGTGAAAGATGTAGAATTATAcgagaatgatataattttagaaagcaGCGACGaggaaagtatatttaataatgtaaacgTCGATAAGGAAAGTGGAAATCGTTCTATTATGTTACAATGCCTAGGAAATAGACAAAAATACTTGAAATGCGGCGCGTGTATGAATCTCTATCACACCAAGGAGACTCTAGATGGTCACAAGTGCAAGCCCAGTATGCAGAGCACAACGAAGCCGTACAAGTGTCTTACGTGTGACACGACGTTCAGTTTCGAGGAACGTTTGAACTTCCACGCGCAATTTCACAGAGGTGCGAAAGCGTTGTACTGCGAAATCTGCAAAATAACTTTCGGTAAAGAATTGAAGCTGTTCTATCACTATAAGAGATATCATTCCAAGGATATTAGCATCTCGTGTCTGCAGTGTGGAAAATTATTCGAGAATCAGGAGGCGCTCCGTGTGCACGTTTGCGTAGACGGTAAGAATCGGCCACACATCTGCGAGGTGTGTAACAAAGGCTTTTCCGACGGCTATACCCTGAAGCGTCACATAGTGACGCACCTGCCCGAGAAGCCTTACAAATGCTCGCAATGTTCGAAGAGCTTTACGCAAAAGTCGAGATTGAATAAGCATGTCGCGAGTCACTGCATCGTTATCGAAAATAATCAGACGGTCTGGAAATGCATTCAATGCGGCGAGGTATTTATCTCTTGCGACGACGCCGATGCTCATTGCAAGATACACGAGGACAAGATCACATTGATAGAGGAGCTATCGATATCGAAATTGTATCATTGCGAATTCTGCAACAGTCACTTTACCGACGTGGACAACCTGAAGACTCATCAGAATCGACACGTCGTCGAAAAACCGTATACGTGTAACGCGTGCGAAACTATGTACAAATCGTTCGCGGAGGCAATCTTACATTGGAAGGAACACCAGAGATTGTTCAAAGTTCTCGTCGTCTTTCTATGCGACGTCTGCAACAAGGACATGAAGGAATTATCCCTGTTGTATAAACACAAGCAAAAGAGACACGATTATGCAGCCAGATTATCCGAGTCCGGCGATGCGAAGTTCGTATGCGAACTTTGCGGAAATATATTCGACAGGAGCGAGGATATACAGGATCACGGACGAGATCAGTGTTCCAAATTTCCCTGTGATATCTGCGGCAATCTATTGCCCACGGCAAATTCGTTGAATGCTCATAAAAGGCGGCACAACGGACTGCGACCGTACGTCTGTAACATCTGCGGGAAGAGTTACACTCAGTCCAGTCACATGTGGACTCACAAGAGATTTCACATGGGCGTCAAGCCTTACGCTTGCGAATATTGCGATCAGCGTTTCACGATAAAGCCGGATTTGGCGGATCACACCAGGAAGAAGCATACGAGGGAGAGGCCGTTCAAGTGCGACGTGTGCAATAAGGCTTTTCTCACCGGATCCGTATTTTATCAGCATAGATTGATACACCGCGGTGATCGTAGATACAAGTGTCACTACTGCGAGAAGGCCTTCACCAGAACGGAGGCTTTAAATAATCACATTAAGATACACACCGGGGAAAAGCCGCACGCGTGCGACGTGTGCGGCAGATGCTTCAGACAGAAAGGAGACATGAGAAAACACAGACGCACCCAACATAATTCTAAGCAGGATACGTCTTGA
- Protein Sequence
- MDKHDNKINLEEIVDRQYERLNELNMTTILTKSKHNIKDELQGMRNKVMQVSCGIENMRKILERMKEQNAYSRELLSLLETLNKRISHQKENVPPELIQGYQNADKQGCIQTQISPAIPKSIINSTHKLIGQKISDNMYNNDIIEETMKDCKRALFNEPELQNMFKAESISTLSDPEDDIDDLDGSIVWSQEEALSSNEILELSAQDEREDSLAAFCRLCAGQTNNPIYIYSELGESMKLAHKINTCLSVKIKKTDPLPKQLCLTCIEKVNCYDGFDTQCIKAEEILLTMLKEKQFFNASNYENQILSDRQSCPLCIEGYMNTCENMSQHVKDVELYENDIILESSDEESIFNNVNVDKESGNRSIMLQCLGNRQKYLKCGACMNLYHTKETLDGHKCKPSMQSTTKPYKCLTCDTTFSFEERLNFHAQFHRGAKALYCEICKITFGKELKLFYHYKRYHSKDISISCLQCGKLFENQEALRVHVCVDGKNRPHICEVCNKGFSDGYTLKRHIVTHLPEKPYKCSQCSKSFTQKSRLNKHVASHCIVIENNQTVWKCIQCGEVFISCDDADAHCKIHEDKITLIEELSISKLYHCEFCNSHFTDVDNLKTHQNRHVVEKPYTCNACETMYKSFAEAILHWKEHQRLFKVLVVFLCDVCNKDMKELSLLYKHKQKRHDYAARLSESGDAKFVCELCGNIFDRSEDIQDHGRDQCSKFPCDICGNLLPTANSLNAHKRRHNGLRPYVCNICGKSYTQSSHMWTHKRFHMGVKPYACEYCDQRFTIKPDLADHTRKKHTRERPFKCDVCNKAFLTGSVFYQHRLIHRGDRRYKCHYCEKAFTRTEALNNHIKIHTGEKPHACDVCGRCFRQKGDMRKHRRTQHNSKQDTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01354793;
- 90% Identity
- iTF_00867636;
- 80% Identity
- -