Lnig002499.1
Basic Information
- Insect
- Lasius niger
- Gene Symbol
- -
- Assembly
- GCA_001045655.1
- Location
- LBMM01000932.1:4115-17834[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 5.4e-06 0.00058 20.2 1.0 1 23 266 288 266 288 0.98 2 32 0.0078 0.84 10.2 3.7 1 23 311 334 311 334 0.96 3 32 9.2e-05 0.0099 16.3 0.5 2 23 341 363 340 363 0.96 4 32 0.0027 0.29 11.7 0.1 1 21 383 403 383 404 0.95 5 32 0.0018 0.2 12.2 0.1 2 23 501 522 500 522 0.94 6 32 0.0047 0.51 10.9 0.4 2 23 529 551 528 551 0.91 7 32 7.6e-05 0.0081 16.6 0.1 1 23 621 644 621 644 0.96 8 32 0.0094 1 10.0 1.2 1 23 650 673 650 673 0.95 9 32 0.053 5.7 7.6 0.8 1 23 686 708 686 708 0.97 10 32 3.1e-05 0.0033 17.8 0.9 3 23 753 774 752 774 0.96 11 32 1.3 1.4e+02 3.2 0.4 1 23 807 830 807 830 0.92 12 32 0.57 61 4.4 1.3 2 23 837 860 836 860 0.90 13 32 0.78 83 3.9 0.0 2 23 869 891 869 891 0.90 14 32 0.016 1.7 9.3 0.0 2 23 898 920 897 920 0.93 15 32 1.1e-05 0.0012 19.2 1.2 1 23 928 950 928 950 0.98 16 32 0.01 1.1 9.8 1.6 2 23 994 1017 993 1017 0.95 17 32 0.0036 0.39 11.3 1.0 1 23 1020 1043 1020 1043 0.97 18 32 0.00059 0.064 13.7 0.1 2 23 1050 1072 1049 1072 0.95 19 32 0.00079 0.085 13.4 3.9 1 21 1100 1120 1100 1121 0.95 20 32 0.0023 0.25 11.9 1.8 2 23 1135 1156 1134 1157 0.93 21 32 0.31 33 5.2 1.1 1 23 1160 1183 1160 1183 0.94 22 32 0.009 0.96 10.0 0.9 2 23 1190 1213 1189 1213 0.90 23 32 2.6 2.8e+02 2.3 0.2 2 23 1221 1243 1221 1243 0.94 24 32 2.8 3e+02 2.2 0.0 2 23 1250 1272 1249 1272 0.88 25 32 0.2 21 5.8 2.7 2 23 1281 1303 1281 1303 0.96 26 32 0.51 55 4.5 0.6 2 23 1309 1331 1308 1331 0.91 27 32 0.014 1.5 9.4 0.1 1 23 1393 1416 1393 1416 0.95 28 32 0.00016 0.018 15.5 1.9 1 21 1444 1464 1444 1465 0.96 29 32 0.28 30 5.4 1.9 2 23 1565 1587 1564 1587 0.94 30 32 0.79 85 3.9 0.4 2 23 1594 1616 1593 1616 0.94 31 32 0.6 64 4.3 2.5 1 23 1627 1649 1627 1649 0.97 32 32 0.15 16 6.2 0.1 1 19 1653 1671 1653 1674 0.91
Sequence Information
- Coding Sequence
- ATGGCGACGATATCGACGATAtcgacgacaacgacaacgacgacgacgatgacgacgacgacttcGTCGTTGGCAGTTACTACGACGAAGGGCACGATGGCGATGCCGACGGAGCGGAGGAAATCTTATCACGATCTCTGTCGCCTGTGCGCCTCTCACGACAACGCCAGCATGCACATATTCGGCGAGGAAGGCATAAGCCGGCAGCTAGTTGGCAAAATCCAGACGTGCCTGCCATTCAAGATAGAGGAAGATGATCGTTTGCCGAAAGTCCTGTGTTATCGATGCATGTacaatttggaaaatttttacgaCTTCAGAACTGCGTGCGTGAACGCGGCTGCTTGGTTGGAAAGAAATAGGCCCAAGGAAGGCGCGAGCGATGACAGTGCAAATGATAGCGCGCAGTGCAGCGAGATGCACGCGGAGCTTCTCAAGGGAAAGGAAAATATGCCAATACTTATCCCGGAGGCGCCCGTGGTTAATCCGAACGCCGCATTAGGTACACCGCCGAGATTGAATTCTGACGGTGAAGCCGATCCCGAGATCGAAGAGATTCTCGACGCGAGCGAAGGTACGGACGAAGTGCTCGACGACTCGACGGAGGATCGACGATCGGAATACGAATACGAGATGGACATGGAGACGAATCCTAGCGACTTCTTGGAAATGACGCCGATGGTAACCGAGGAAAACGAGGAAGAGTGCGTCGCGAACAATACGAGTGTCCCGACCGGGGGTCAACAACAAGACGCCGCGGCGGTCTTTCCACCTACGTCGCAGCAGCACGAGGTCTATGTATGCTCTCTGTGCAACAAGGCATTTAGCTCCAAGGGTCATCTGTCGTTGCACGCGAGGATTCACGTGGGCGAGGGTGATGTGATCGGCGAAAGAGTCATCACCGATGACCACACCTCATATCAGCGACCGTACCAATGCGATCTCTGTCACAAATCGTATTCTACCGCGAAGCATCGCTGGGGACATGTTTCTACGACACACCGggGACATCCTGCGGTAACGTGTGCGTACTGCTCGCGCATATACTCAACGCGATACAATCTCGAGGAGCATATAAAATCGCGACACGCCGGTCTACCGCCACCCCCGGAATTATCGGTTTCCCTTTCCCGTGCGGAGACTCGTTATCAATGCCAAACGTGTCCGATGGTTTATAAAGATCTGGCAGATTTCAACGCGCATCGTCAGATATGCGAGGAACAACGCACTGATCTATTGGGGCAAACTGACGCGCAGAACAATAAGAGTTTGGTCGATGTGTCCGATATGTCGAGTATTATAGACTCGGACGACGAGAACAAAGACTTTAGGAGTGCCGAGGCTAAACTGGCCAAGAATCCGCAATTGACTATATTGAAACAAGCGTTGACTAAAGGAGACAGTTTAAAACGGAATTACGACGATGATGGTTCAACGTCGAGTTGCAAGACGAGAAAAATGGTCAAGATAgAAGGTGAGAATCCTGAGATAAAAAGGTGGTATTGCGAATATTGTCCGCAAAGTTTTACATCGGTGGACGGTCTAAAGTTGCACGAAGTTAGGCATGATGCCGAGAAGCCGTTTATCTGCATACTATGCAAGAAGGATTTCGTTTTGAAATCTTCATTGATAAGGCACATTACGACGATACACGGCGTCGATCCTACTCCTATTATTGACAGCGACAAGTGTCTAAAGACATCTGTGATGCCTCAGAATTGGAATCGAATGGATGTCAGCGTTTACGAGCAGAGCGAAATAAAGGAACCACCGGAGTTTTCGTCGTCACccgagGTAAATTTGGACAATGACGACAAAGACTCGAAAAACAATCACGAGAATATAGAAATTGAAACAGTATTTATATGTGAGATTTGTACAAGGGACTTTAATGATCGAGCGTCGTTATGGTTGCACATGCGTGCAACGCATAAGGAACTTGCTGCATTCGCCTGTGGAGTGTGTTTAAAGATTTGTTCCGATAATACACAACTCCAGAGTCATCTCTACATGTACCACGGAAAATCCAAGCTTTTAATATCAGAACAAAGAAGGTACAGCTGCACAATATGCGGCAGACAGCATGATTCAAGAAAGAAGCTAATCGCTCATGTCTCGATTCACAATATCGATTCTGGGTTTGATCCTGcaatttttgtacaattaaacagtaattattataacgagAACTTAAACGGTACCGAAGGAAATGAGCAAGTAATGGATTTTGATGGAGAAGACGGCGAGAAAGTCGATTGttacatttgttataaatCTTTTCCAAACGAGGATCATCTTATACGACATCAGAGAAATGCGCATAAGTCCGAACAGATAATTCCGTTGGGAGACGCCGCGGGAAGTGGAAACGCTGCGAATGTCAACGGCAATGGTAATAGGGCGCAGTAtcatttgttttttgtttgcgAAATTTGCGGTAGTTCTCATTCGAGTAAATGGGAACGCTGGTTGCATATCAACAACATGCATAGTAACGAATCTTCCATCAAGTGCGAATATGAAAACTGTGGGAAGATATTCGCAACGAAATTGTTGCGCAATGACCATTTTCAGCATCATTTGATTCAAGGCCCGTCGCCGAACACTTGCGAGATATGCGGGAAATTATGGCCTACTCGTGTCGATTACTGGAAACACGTGATGGGCGTCCACGCGGACATGGTGCCCCTAATCTGCGGCGTTTGTCTGAAAGTATTTTCCGACGTGGTGCAGTTAAGTGCCCATGTTAAGGCGAAACATTGGCCACTGACCAGTGGTGATTTCAGCTGTGATATTTGCGGTAGACCGTATTCCAACAAATCGAAGATGTCCCGGCATAGAAAGATCCACGGTTTGGAGGTGGCAGCAGCGGCGGCGGTAGCTGCGGACGTCGCGTGTGATAATAGCAACCTCAACGAGACAACCAACGAATCGATCAAGCTCGAGCACGGCAACAACAGGGCTGTAGACGTCAAATTGAAATGCGAACAGTGCCCCGAGCACAAGTTTACGACTCTGGACAGTTTACGCAATCATCGTCGGGTAGTGCACAATCTCTTCCCGTGCGATCTATGCGTTAAGTATTATGGTAGGACGTCGCACTTGTGGAAACATGTGAACAGGGTACACAAGGGTCACCCGGACGTGACTTGTCCATACTGTGCGAAAACGAGCGCGTCGAGGGATCATCTGGCGGCGCACATCGCGAAGATTCACAGGTACGTACCCGCGATGAGTGGCAAGGACAGTCAGAATTGCGTCGTTTCCAAGTCCTTGAGTGTGGAAGATGGTGTCCTGCATTACTGCGAGAAGTGTAACAAGGGATTCCACAAGCGCTACCTGCTCCGACGTCATATGAAGGGCTGCCAAAATTACCGTAAGGATCCTGGAGCATTGTTGACCCGCTGCCGAGCCTGCGAGAGGATATTCAAGGATCGTGCGAGTCTGCAGAAGCACATCGAGAATCATCACAGCACGTATACCTGCCATTTGTGTAACGAGACCATCACTTCCAAGCTGGGCATCATGACACACAATCGCGTCAATCATATGGATCATCCGGATTTGACATGCGACAATCCGAGCTGTAAGAAACTCTTCCGCACCAAGGAGGATCTCGAGTCTCATCGAAAGGATCACAAGTATCACAGCAACCCGAACGTCTGCGATTTTTGCGGTGACACCGTGGAGAATAAACTCAAGTTGAAGATGCACGTGCTATCATTACACCGGAACGAGATCGGCGTGTCTTGCGGCGTCTGTCTCATTCCTATGAAGGATCCGAAAGACTTGAAGAAACACGTCGAGGCGGAGCACAGCAGCGTTCTTTCCAATCCGAATACATGTCAGGTATGTGGCAAGCAGTACGCGTCCAAGTGGAAGGCTTTCGATCACACGAAGAAATGTCACGGAAAAGTTTTTCTCACGTGCAAACAGTGTTTAGCAGTTTTCACGAACGAGAACGATATACGCGATCACTACGAACACGTGCACAACGTTCCAAAGGACCAATTAGCCGTTTTCGAATATAGAATGGACATCGGTGCGAAGAGGGAAGATTACGAGACGCCCGATATCATCGTGAAGGAGGAACCGGACGATCTCGAGTTCGACGAGGAGATGTGCGACGAGAGCTCGAATGATTCTCGCAAACGCAGACGATCCCCGAATGATACGTACGATTGCGAAATGTGCCCCGAGATCTTCCTCAATTCGGACACACTCGCCAAGCATTATCAGAACGTTCACAACACCGATCCCGTCCGTATGTTCAAGAAGTTTAAGAAGAGCAACGGCGACGGCAAACGTAAAATGAGAAACAGAAACAATTATGAATGCAAGAATTGCAAGAAGCACTTCTCCACCAAGACCCTATTTTGGAATCACATCAACGCGTGCACGCGACGAAACTCGGTATGCAGATTCGACGCCCCGAATAATATCCCGACATCGATTCTGGAGTCGCATCTGAAGAACAATAATCAGATTCAGCGAGAGGAACCGATGCCGCTGACGAACGAATCCAATTTGAACATTCCTGACTTCAATCTGTTCGAGGACATCAATCTGCAATTGTCGGCCCAGAAACCGGTCCCGAATCTCATGCCGTTGCCGCAGAAATCGACGGGTAATGGCAAGTGCTCGCGCAAAGACTCGCGCAAGGTGTACGACGAATCGACGAATACCGAGTGCACGTGCGAGGTCTGCGGCAAACAGTGGCCCGCTAAGAAACACTTGTGGCAACATCTCATTCGCTTCCATCGCGCTGAAGCTGCCGTTACTTGTGGAGTGTGCTTGAAGCTATGCAAATCCTATCAAGACCTGGCCGATCACCTGAAGGCCGAGCACGCCCCTGTCTTGTCGCCGGAGGGCAACAATTTCACGTGCAAGACGTGCGGTAGATATCACAACGCGAGAAGTAAACTGCTCTTGCACATGAGCATTCATATCGGGTACTTCCGGTGCGAGAAGTGCCAGCAAGGTTTCGCGAGTGAGGAGAAGCTCGGCGAGCACGCGACGAGCTGCAACGGCAAATCGGAATTTGAGGATCATGCGGTGACGGCGGATATCGAAGATAACGCGAAAAACGACAACGATGAGAAGGGTAGTTTGATCGCTGACGAAACGTCGGTCATCGAAGAGGAAGTTGAAGAAGCGGATTTCGAATCGGAGGGCGAAGGTAGCAGAAGCATCCAAAACGAAGAGAACAATAGCGAGGAAGATAATTCGGATAGCGATGACTCGGATAGCGGTAGCAATAGTAGTTCGAGCGAGAACGAGGGCGAAgaggacgaagaagaagaagaggaagagcaggaagaagaagaagaggagaatgAAAACGAGTCTGATACGAGGACTGAACCGGACACGAGAACTACGAGCAGAGCGAGCGGTGACAGTGGATCGTGTAATTCCGAAAGCGACGAATCGGATATGGATGAAGCAGGAGTGCGCACGATGCAGAAGAAAGCGCCGCGATTGGACGATATCGATAGGTTCAGGATACACGACGAAGAGAACTCGTCGGCGATGGAGAAGTACGAGGATCAGAGGACCGCTTCCGTTATCGCAACGACGGATGCAGACCAAAATAAACAGAGTAATTTGAATAACCTACTGATTCCCGGCGCACCTACGAACGTAGACAAATTTAAGGCATTGCGTCTTCAGGAATCCACTGCAGCTACAGCGAGCGATGTAGACTTCTCTAATGATAACGAAAATGATAATGAGGAAGATGACGAAGAGGAAAATAATGAGaacgacgaagaagaagaggggGATGAAGGTGAGGGTGAAGGTGATGGTGATGGTGAAGGTGAAGGTgaagatgaaaatgaaaatgaaaatgaaaatgaagatgAAGATGAAAGTGAAGATGAGGGTACAAGCGAGGCCGAGGCTGAGAGTGGAGAAGATGACGGCGAAAATGACGCTGAAGATGGgagggaagaagaagaagaagaggaagaagaagaagaaggggaGGAAAATGatgaggacgacgacgacggaccGCCTGTGCTGAGTCCGATAATGCCTTTGTTACCAGAAAACGAATCCGAAGAGCACAGCAATACGATGGATCGTACAAGGCATAAGCTTAGTCCGATGATATCGCTGAATATGGATAAATTGATGGAGGGATGCGAGATAACGGAGATAAAACCTGACGCGGAGAACACGGCGGCACCGTCGAACGAGTCCAATTTTTTCGCGGCTAATAACAACGATCTACCCGTGACATGGGACGAGGATGATGAACGCGATTGCGATTCCGATGCCGGAGACGGGGATGTGATGGTGGTGAAGAACGAGGAGTATGCTAAGGGGAATATGAACGATTTGGAGGGCGACGACTACGAGGAAGATTCCGCGGATGAGAATGTCATGGACGATAGAGACGGTGGTAGTGGAGATCAAGTGCACGAGATACATAGCTTAGACGGGACAGTGTTAATGATGACTAATGACGCGGAAGGTAATCCGATTTTGATACAGCATAACATGTTAGGTATCGATAACGAGGACTCTAATGCCGAAGTGGCGCAGTATATTTACCCAGAGAATACTTACGAgatcgaagaagaagagggagaggacGAGAACGATTTTGCGACGCGAAACGAAACCGACGCCACGCAGACGGGTGAAATACAAGATATATCTTATGTTCAGGATATGTCGGAGAACGAGGACAGCACGACGGAGGATGACGTAGAGGAGAACAGTAGTGACGCCCAGAAATAG
- Protein Sequence
- MATISTISTTTTTTTTMTTTTSSLAVTTTKGTMAMPTERRKSYHDLCRLCASHDNASMHIFGEEGISRQLVGKIQTCLPFKIEEDDRLPKVLCYRCMYNLENFYDFRTACVNAAAWLERNRPKEGASDDSANDSAQCSEMHAELLKGKENMPILIPEAPVVNPNAALGTPPRLNSDGEADPEIEEILDASEGTDEVLDDSTEDRRSEYEYEMDMETNPSDFLEMTPMVTEENEEECVANNTSVPTGGQQQDAAAVFPPTSQQHEVYVCSLCNKAFSSKGHLSLHARIHVGEGDVIGERVITDDHTSYQRPYQCDLCHKSYSTAKHRWGHVSTTHRGHPAVTCAYCSRIYSTRYNLEEHIKSRHAGLPPPPELSVSLSRAETRYQCQTCPMVYKDLADFNAHRQICEEQRTDLLGQTDAQNNKSLVDVSDMSSIIDSDDENKDFRSAEAKLAKNPQLTILKQALTKGDSLKRNYDDDGSTSSCKTRKMVKIEGENPEIKRWYCEYCPQSFTSVDGLKLHEVRHDAEKPFICILCKKDFVLKSSLIRHITTIHGVDPTPIIDSDKCLKTSVMPQNWNRMDVSVYEQSEIKEPPEFSSSPEVNLDNDDKDSKNNHENIEIETVFICEICTRDFNDRASLWLHMRATHKELAAFACGVCLKICSDNTQLQSHLYMYHGKSKLLISEQRRYSCTICGRQHDSRKKLIAHVSIHNIDSGFDPAIFVQLNSNYYNENLNGTEGNEQVMDFDGEDGEKVDCYICYKSFPNEDHLIRHQRNAHKSEQIIPLGDAAGSGNAANVNGNGNRAQYHLFFVCEICGSSHSSKWERWLHINNMHSNESSIKCEYENCGKIFATKLLRNDHFQHHLIQGPSPNTCEICGKLWPTRVDYWKHVMGVHADMVPLICGVCLKVFSDVVQLSAHVKAKHWPLTSGDFSCDICGRPYSNKSKMSRHRKIHGLEVAAAAAVAADVACDNSNLNETTNESIKLEHGNNRAVDVKLKCEQCPEHKFTTLDSLRNHRRVVHNLFPCDLCVKYYGRTSHLWKHVNRVHKGHPDVTCPYCAKTSASRDHLAAHIAKIHRYVPAMSGKDSQNCVVSKSLSVEDGVLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRVNHMDHPDLTCDNPSCKKLFRTKEDLESHRKDHKYHSNPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVEAEHSSVLSNPNTCQVCGKQYASKWKAFDHTKKCHGKVFLTCKQCLAVFTNENDIRDHYEHVHNVPKDQLAVFEYRMDIGAKREDYETPDIIVKEEPDDLEFDEEMCDESSNDSRKRRRSPNDTYDCEMCPEIFLNSDTLAKHYQNVHNTDPVRMFKKFKKSNGDGKRKMRNRNNYECKNCKKHFSTKTLFWNHINACTRRNSVCRFDAPNNIPTSILESHLKNNNQIQREEPMPLTNESNLNIPDFNLFEDINLQLSAQKPVPNLMPLPQKSTGNGKCSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKSYQDLADHLKAEHAPVLSPEGNNFTCKTCGRYHNARSKLLLHMSIHIGYFRCEKCQQGFASEEKLGEHATSCNGKSEFEDHAVTADIEDNAKNDNDEKGSLIADETSVIEEEVEEADFESEGEGSRSIQNEENNSEEDNSDSDDSDSGSNSSSSENEGEEDEEEEEEEQEEEEEENENESDTRTEPDTRTTSRASGDSGSCNSESDESDMDEAGVRTMQKKAPRLDDIDRFRIHDEENSSAMEKYEDQRTASVIATTDADQNKQSNLNNLLIPGAPTNVDKFKALRLQESTAATASDVDFSNDNENDNEEDDEEENNENDEEEEGDEGEGEGDGDGEGEGEDENENENENEDEDESEDEGTSEAEAESGEDDGENDAEDGREEEEEEEEEEEGEENDEDDDDGPPVLSPIMPLLPENESEEHSNTMDRTRHKLSPMISLNMDKLMEGCEITEIKPDAENTAAPSNESNFFAANNNDLPVTWDEDDERDCDSDAGDGDVMVVKNEEYAKGNMNDLEGDDYEEDSADENVMDDRDGGSGDQVHEIHSLDGTVLMMTNDAEGNPILIQHNMLGIDNEDSNAEVAQYIYPENTYEIEEEEGEDENDFATRNETDATQTGEIQDISYVQDMSENEDSTTEDDVEENSSDAQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01254981;
- 90% Identity
- iTF_00729511;
- 80% Identity
- -