Lful009777.1
Basic Information
- Insect
- Lasius fuliginosus
- Gene Symbol
- RCBTB1
- Assembly
- GCA_949152495.1
- Location
- OX424445.1:6285027-6288792[+]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.1 2.2e+03 -0.0 0.0 66 90 324 346 323 360 0.81 2 3 2.4e-19 1e-16 62.2 3.1 5 108 426 530 423 532 0.89 3 3 4 1.7e+03 0.3 0.0 80 103 534 557 529 563 0.83
Sequence Information
- Coding Sequence
- ATGGATCAAACCGAAACACATATGACAAATCTTTCTGAAATCtctaaaagaagaaaattgtcAACAAGTAAGGAAGGAAAAGAAGTacagaaaaacaaaataaaaacctTTCAAAGCAATCTTGCGAAGTATAAATATCTGCTGAATTTCAAGAGATGGccaattttttactttctggAACCGGAATTTATCCTGCAAATTCATATGGCTCTGGTATTAGAAGAGGGGATTTTAATTGTAACGAGAGACAAGATGGTATACGCCTTTGGTCATAATAAGAATAAACTATTAGGAATAGGATGCACAAGTATGACATTGCAACCAAAAAAAGTAGAAGTCTTAtgtggaaaaaatataaagaaaattgtttcttgGGAAGGTGGACCTCGCATAATGGCGCTTACAAAAGAGGGAGAAGTTTATTCCTGGGGTTATGCTGAAGAAGAATTGAAAGAAACACTAAATTCTTATAATGATCATGTCCAGATAGGTTTGACAATACCTACTCAAATAAGACTATTGAGTACAAAATACATTATGGACATTAAATGCAGCATTACTCATTGTCTTGCTCTTACTGATGATGGAGAGgTATATATGTGGGGATACTCAGATATAAAggttataaatgttaatatagaGCCAGAGACATATTTTTCTACAGACATAAagcaaatacattttaatggAAAGAAAATTGTTCGCATTGCTTGTGGTTCGTTATTCAGTATGGCTGTCTCTAATGAAGGTAAATTATACAGTTGGGGCCACAACATCGATGGTGTATTAGGGATTGGTAGTGTGCTACCAGAATTTGatcaaaacttaaatacgtATCAAGTCACTAGTCTctcaaacaaaataatagTTAAAGTAATCTGTGGTTGTGCACATACAGTTGCACTCACGAACAGAGGAAAGATCTACATCTGGGGTAGTAACAGGTACAGACAATTGGGCTTGGACCGGGAAGTACTGGAATCCATGTATCCTGTCTTGTTAAATATgccaaaaatgaaaaaagtattGGACATCGCCATTGGACAGAgttatgaaagaaatattgccCTTTGTAATGATGGATGTATCTACATATGGGGCGGCAGGGGCGACGCTGCGCTATACTTCGGTCGGCACCTTTCGCATCCAACTATCACACCGTTTTTAAACATGCACGAAgctttaatgttaaataactTGCCGCTAATGATATTCGCGGATGATCTTAAATACATGGATGAAGAGTTGGACATATTAAAATCCTGGGAAACTTTATTCAATGATCTATCAACAAGCGATCTCACGATACAAGTGGAGGGGCAATCCATTCACGTTCATAAGGCTATTTTAAGGAGCCGTAGTTCATATTTCAGAACCATATTCCAAGATAATTCGATGGAAAACAATCAAAGTGTCATCCAGCATTTTGAATATTcctatattgtatataaaactttccTGAAATACTTATATACTGATGTGATCGATCTATGTGATCTATCTATGGAGATGTTACTAGCACTGTTGGATTTAGCTATTGTATATTGCGAGAGCAAACTTCAGAGATATTGTATTCAGGAAATAAAACATGGAATCACCATACAAAATGTAGCTCTCCTTCACAGCActgcagaaaaatataataaggaggatttgataaaattttgtcttTGCTTTGAATCACAAAATGGCTGA
- Protein Sequence
- MDQTETHMTNLSEISKRRKLSTSKEGKEVQKNKIKTFQSNLAKYKYLLNFKRWPIFYFLEPEFILQIHMALVLEEGILIVTRDKMVYAFGHNKNKLLGIGCTSMTLQPKKVEVLCGKNIKKIVSWEGGPRIMALTKEGEVYSWGYAEEELKETLNSYNDHVQIGLTIPTQIRLLSTKYIMDIKCSITHCLALTDDGEVYMWGYSDIKVINVNIEPETYFSTDIKQIHFNGKKIVRIACGSLFSMAVSNEGKLYSWGHNIDGVLGIGSVLPEFDQNLNTYQVTSLSNKIIVKVICGCAHTVALTNRGKIYIWGSNRYRQLGLDREVLESMYPVLLNMPKMKKVLDIAIGQSYERNIALCNDGCIYIWGGRGDAALYFGRHLSHPTITPFLNMHEALMLNNLPLMIFADDLKYMDEELDILKSWETLFNDLSTSDLTIQVEGQSIHVHKAILRSRSSYFRTIFQDNSMENNQSVIQHFEYSYIVYKTFLKYLYTDVIDLCDLSMEMLLALLDLAIVYCESKLQRYCIQEIKHGITIQNVALLHSTAEKYNKEDLIKFCLCFESQNG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00868236;
- 90% Identity
- iTF_00869005;
- 80% Identity
- -