Basic Information

Insect: Lasioglossum zephyrum
Gene Symbol: -
Assembly: GCA_028455615.1
Location: CM052328.1:16288581-16294747[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.00092 0.08 13.6 0.2 2 23 147 169 146 169 0.93

2 19 4 3.5e+02 2.2 0.7 2 21 175 194 175 195 0.93

3 19 0.025 2.2 9.1 4.5 2 23 211 233 211 233 0.90

4 19 0.01 0.91 10.3 2.9 1 23 592 615 592 615 0.92

5 19 0.0033 0.28 11.9 0.7 2 23 648 669 647 669 0.95

6 19 0.97 85 4.1 1.0 1 21 806 826 806 827 0.93

7 19 0.57 50 4.8 2.9 1 20 834 853 834 857 0.88

8 19 0.025 2.2 9.1 2.7 1 22 867 888 867 890 0.89

9 19 7.2 6.3e+02 1.4 0.1 2 19 913 930 912 933 0.88

10 19 0.13 11 6.9 2.6 1 23 940 963 940 963 0.93

11 19 0.035 3.1 8.6 1.8 1 23 974 997 974 997 0.91

12 19 0.028 2.4 9.0 0.1 1 21 1030 1050 1030 1051 0.95

13 19 1.3 1.2e+02 3.7 1.8 1 23 1058 1081 1058 1081 0.89

14 19 0.00064 0.056 14.1 0.3 1 20 1143 1162 1143 1164 0.95

15 19 0.0079 0.69 10.7 1.6 1 23 1171 1193 1171 1193 0.98

16 19 0.0024 0.21 12.3 0.9 1 23 1203 1226 1203 1226 0.95

17 19 0.0087 0.76 10.5 0.0 2 21 1263 1282 1262 1283 0.93

18 19 0.0021 0.18 12.5 3.1 1 23 1290 1312 1290 1312 0.97

19 19 3.1e-05 0.0027 18.2 0.1 3 23 1476 1497 1474 1497 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.00092	0.08	13.6	0.2	2	23	147	169	146	169	0.93
2	19	4	3.5e+02	2.2	0.7	2	21	175	194	175	195	0.93
3	19	0.025	2.2	9.1	4.5	2	23	211	233	211	233	0.90
4	19	0.01	0.91	10.3	2.9	1	23	592	615	592	615	0.92
5	19	0.0033	0.28	11.9	0.7	2	23	648	669	647	669	0.95
6	19	0.97	85	4.1	1.0	1	21	806	826	806	827	0.93
7	19	0.57	50	4.8	2.9	1	20	834	853	834	857	0.88
8	19	0.025	2.2	9.1	2.7	1	22	867	888	867	890	0.89
9	19	7.2	6.3e+02	1.4	0.1	2	19	913	930	912	933	0.88
10	19	0.13	11	6.9	2.6	1	23	940	963	940	963	0.93
11	19	0.035	3.1	8.6	1.8	1	23	974	997	974	997	0.91
12	19	0.028	2.4	9.0	0.1	1	21	1030	1050	1030	1051	0.95
13	19	1.3	1.2e+02	3.7	1.8	1	23	1058	1081	1058	1081	0.89
14	19	0.00064	0.056	14.1	0.3	1	20	1143	1162	1143	1164	0.95
15	19	0.0079	0.69	10.7	1.6	1	23	1171	1193	1171	1193	0.98
16	19	0.0024	0.21	12.3	0.9	1	23	1203	1226	1203	1226	0.95
17	19	0.0087	0.76	10.5	0.0	2	21	1263	1282	1262	1283	0.93
18	19	0.0021	0.18	12.5	3.1	1	23	1290	1312	1290	1312	0.97
19	19	3.1e-05	0.0027	18.2	0.1	3	23	1476	1497	1474	1497	0.93

Sequence Information

Coding Sequence: ATGGCTCGAGTTTATGTATATGAACGTCCAGTCGATTCTGTCCTGACGGATGTGTCCTTCTATGAGAAGCATCACCTTCTTAATGGGGTACGGGTGAAACAAGAGCCATGTGACACGGATGACAAAAGTCAGGACAGTACTTTGCAATTTGCAAATTCTAATGTAAGGATTACCACATCGGCTGGAACGACTATTGAAGGGATACAATTGGTGGACGTTGTAAATAACAAAGAGAATGAGCTCGTATCATCTAAGAACCGTGCCGGTATAGGCAAATCGGATACGGACGTAGTCAATACGAGGAAGCGTAAACGTTTAACATTTGCGAATTTGCCGGAAACGGTGCCTCAGAAAGAGTCGCGACAACACTCCTGCCGTAGTAGCTTTGAACGTATATTTCCGAAACTAGTAGGCAAGGAAGTAAGAAATAGTAAAGTGGAATGTGACATATGTTATGTAATATTTAGAACAGAATCAGCACTTAAGAGACACAGAAGTTATTACCATGAGTTAGTCGCTCGTACCTGTAATAAATGCTACATGATATGTCAATCGATTGATGGGTTAACAGCTCATAAACGGCTAGATGAATGCAAGGTAAAATCACATTCGGACTGGACAAAAGAAAATACTTGTGGTTTCTGTAATCGGAAGTTCAAGACGAAACCAAATTTTCAGAGTCACGTGTTTCACACTCATACTGAATTGTTACAGAATAACTCAAGTGAAGCCAGTATGTGTATGTGTGAAACTGATAAAAGCAATAAAACTGATACGACCAAAGAAACCGATAAAATCAGTGAACCGCCATTGGCAGAACGCACTGACGATCACGTAGAACATCCTTCCGCACAGCAGAAAGGAAACAGTCCAACCGATAATCTTACAAAAAAAATGAGACAAACAACTATGATAGAGTTCCTTTCACGATTCACGAAGAAAGAACACATTTCTCCGAACAAGATTGAACCTACAAGAGAAACTCCAAAAAAAGCAAGTCCCAGACAATTAGAAAGAATAACGGGGAAAGTAGCGGAGACACCGAAAAAAACCACAGTCAAGAAAAATGGAATAATAACAGAGATATCCGATTTTCTGGCAGAAGCTCAGAAAAAGGTTGGACAAAACGGAGCAATAGCAGAATTCGTTTCCACTCCCCGTAATGAGAAAGCGCCGACTATTGATGAAAGTTATGGTTTACGTAGCAGATCTGACAAGGAGAAAAAACCATTTGTCGAGATACACATGGGTTCTGACGAGATGATGACTTTATTGCATAAAAAAATTAAAATCGAATCAAAAGATGAATATCCTATACCACGGAATGAATCCTATAACTTTAGACGCGTGACAAGAAATAGTCGTGATCAACCGCCGAGTGACGTGAGTACACGGCTTCCTTTTTATAGAAAACGTAATGTTAAAGGGCAGTTCATTGTCCAGTCTAAACAGATATCGGCTCGGTTGAAGGTGCAGCAACTGAGAGCTAAGTTCAAATGTAAAGACTGCAAAGTTAATCTAGTTAGATGCGACACGGTTGTCAAAACAGAAATTGTCGATTATGTCCCGTCAACTCCGGTAAACGTATGTGATGATATCGAGGAAGTTTGGAGAAAGAAGGTTAACTTAAAGAGAATCCACGTTCCATTGATCAAACTGAACGAGCCAATAAAAGCAAAAGTTAACGATACGTTCCAATCATCAAATCGATACAACAATCCAGAGAAGACCAATGCATCTCAGTCTAATATTAAGGCTAAATTGCGCAGGATATTCCGGTGTAAAGTCTGTAGGAAATACTTCTCCTCGAAGGAGAGGTTATACGAGCATTTGGAATTTACTCATGTGTTCTACATATCGAGCGTGTGCAGCGCTTGGTACAAATCCCGAGTCAGATTGCTGAGACACTATTTGTACCAGCACTGCGTTATGAAACGCATGCAGTGCTGCGTGTGCTTCGAGAACTTCGTGTCGCCTGTGTTGTTGAAGCGGCACATGGGTCTGCACTGCATCAAGGTGTTGCAATCGAAGAGGGATAAGGTGTTCAACAAAGAGGTGGTCAAATGTAATATGAATTCTAGGGTGAACTCGTGCGGGGCGTGCGGTAAGCAATTTTGGTTGGGGGCTTGCTTGAGCGAACATCAACAGGTGTGTCAGAAGATGAAGGCGCAATTGCAGAAATTACAGATAGCGCAGTGTCTCGTGAAAACGTCCCCAACGAAAAAAACGCTTGAGTCACCGTTGGCTATTGCAAGCGGTACAGTGACCGAGCAGCACCCCATCAAGTTATCCCCTGTCAAAGATCATCCTCGTGGAACCGAATCACCGGCAGTAGCACTGCCCAAAAGATTGCTGAAAGGCGTTGCGTTCGCGAAGGGGTACAACATCAACAATACCAGCACGAGCAAAGAGAAGTTCTCCTGCACCACTTGCGGAGCGCAATTCTTGACTTTCCAGAATTTATGTTTGCATGAACGCGCTTTCACTAATGCCGCAAAGTTCGTCTGCAGGTGCTGCAATACCGGTTTCACCACACGGAAATTATTGCAGAACCATTTCGTAGCCACCCACTTGCTCGACAATGGAAGGAAGTACAAGTACTTTTGTACTTTCTGCACACAGGGCTTTGTAAAGAAGGCCAATCTCCAGATCCACACGGGACATTTCCACCGTGGTCAAACTCCCATCATTCCCAAACCGTGGGTGGATACTACTTCCAACTGGGAGGTGAATACGGTGTGCAACGTTTGCAATTTGCTATTCGAGTCCAGTGAACGGTTCCTCGAGCACAACATGTACTACTACAAGGGACAGACATTTACCTGCACGTTCTGCAATCAAGTCTTCCAGGGAATGTACATGCTGAACCATCACAACAAGTTGGTTCATTACACGGAGGACATGACGAAACAGTACACGTACATGTGCGACATCTGCAACGAGGGCTTCACCCAGGAGTCCCAGCACCAGGCGCATAAATTGCATGTTCATTCGGCATCATCTGAAACCGACACACAGACCCTGCAAGATCACACCTACGCCATTACGATTGGGATGGCAGGATTGACGAATGGACCGACGATGAAATACAACTGTGAGGTTTGCCACATGAACTTCATGGTCGAGGAGGACCTACAACAGCACCAGTTGGAGTACTCCAATACTGGTGACTACCTATGCAGCTACTGTGCCAGAAAATGTCCTACGAACAGCATTCTCAACAAGCACGAGAGTTTGTCGCACACCGGTGGTAATTTCACTGACTACTACAAGTGTCACTACTGCGAGGAGGTCCTTTCCACGTGCACCGCGTTGAAATGCCACGAAATGCACTTCCACCAAAAGATCTCTAATCCCCAGAAGAGCAGCGATAATCGGTTAATTGTGAATCCGAGTGCCAAACCACCTGGAAACAATAGAGACCCATTCGTCTGCACGGTTTGCGACATGACGTTCGTAACCTTGGAGAAATTGAACCATCATACCTTAGAATTTTCGAACGTCGGTCAGTACAGTTGCTACATCTGCAGCCGGAGGTTCTCGGAGCTGTATCGCCTAGAAGTCCACAAGCTAAAGCACTCGAACTTGCACTACATACTGTCTAAGTATCACTGCCCCATATGTCGTGAGGGATTCGCAAATCCAGTCAACGTTCGGGCGCACGAGAAGCATTTCCACAAAAGCCCAACGACCGATCAGTTGGTACCAAAGGCCGCGCAGACCTTGCAGGCAGTCGGCCTCAACGTCGAGAGTGGCTCAAACAGTCCGACTAAGACGAAGTCGATAATGTGTCCTGACTGTTTGGTATCGTACGATTCCGAGAGTGCTTTGAAAAGGCACCAATCACGCTTCTTGAACGAAGGACGACATGTGTGCGAGTACTGCGGCAGGAGGTTCCAACTCATGAAGATGCTGACGCAACATTTGAAGAGGCACACTACAGGCATTGAACGCCTGAAGCACGCGTGTTCCGAATGCAAGGATAGATTTGGTAATCAGGTGTCCAGGTATCAGCATATCGTTCATCTTCATGGAAAGAGTAAGTGGAAAGGCGACGTACCTAATTTCATAAAGTTTCGCCATGATGCTACAGCTGCTGCTAAAAGATTAGAGGCCTCATCACATTACATTGGTAAACCTATTACTACAGCCAGTCCCGTGAGCAGTTTAAGCGATGGTGACGGAAGGTCCTCATCACCAACTGATCAGCTGATTTACGCTGGCGAACCTGTGGCTACAGCCAGCCCCGCAGACGGATTCAGTGATGGTCAGGAACGAACCTTATCACCAACTAATCAGCAGGCGAATATGACTGTAGCGGTAGCTCAGCAAGAGACGTCATATTTGAAACTGGAACGTGACGGGAAGATAATCCAGGGGACCATGCACGACAAGTTGCAGTCTTTGACAGAAGGCGTCATCAACTGCTGGATCTGCGGGAGGAACTTCACCACGAACGACGATCTCGAGATACACCTCAAGGACGCGCATGTGAAGATTTGCCCTATCAACTCGGAAGACGCTGCCGATTCTGCGAAGAATGATACAGATGCCGTGCAAATCGTTTGGGAAAAGATGTCAGACGCTGCCAAACTGTGTGAGGATCAGAGCGACTCGGAGGTCCATATTCTGTGCTCGAGTTACTGCGCCCCGATCATGAACTATGACAAAACTGTTGCGAACATGGAATCAGCGGACTTAAGTGTTAATAATACCTATCTCAAGATAAAAGACTTTGCTAAATTGGTGTAA
Protein Sequence: MARVYVYERPVDSVLTDVSFYEKHHLLNGVRVKQEPCDTDDKSQDSTLQFANSNVRITTSAGTTIEGIQLVDVVNNKENELVSSKNRAGIGKSDTDVVNTRKRKRLTFANLPETVPQKESRQHSCRSSFERIFPKLVGKEVRNSKVECDICYVIFRTESALKRHRSYYHELVARTCNKCYMICQSIDGLTAHKRLDECKVKSHSDWTKENTCGFCNRKFKTKPNFQSHVFHTHTELLQNNSSEASMCMCETDKSNKTDTTKETDKISEPPLAERTDDHVEHPSAQQKGNSPTDNLTKKMRQTTMIEFLSRFTKKEHISPNKIEPTRETPKKASPRQLERITGKVAETPKKTTVKKNGIITEISDFLAEAQKKVGQNGAIAEFVSTPRNEKAPTIDESYGLRSRSDKEKKPFVEIHMGSDEMMTLLHKKIKIESKDEYPIPRNESYNFRRVTRNSRDQPPSDVSTRLPFYRKRNVKGQFIVQSKQISARLKVQQLRAKFKCKDCKVNLVRCDTVVKTEIVDYVPSTPVNVCDDIEEVWRKKVNLKRIHVPLIKLNEPIKAKVNDTFQSSNRYNNPEKTNASQSNIKAKLRRIFRCKVCRKYFSSKERLYEHLEFTHVFYISSVCSAWYKSRVRLLRHYLYQHCVMKRMQCCVCFENFVSPVLLKRHMGLHCIKVLQSKRDKVFNKEVVKCNMNSRVNSCGACGKQFWLGACLSEHQQVCQKMKAQLQKLQIAQCLVKTSPTKKTLESPLAIASGTVTEQHPIKLSPVKDHPRGTESPAVALPKRLLKGVAFAKGYNINNTSTSKEKFSCTTCGAQFLTFQNLCLHERAFTNAAKFVCRCCNTGFTTRKLLQNHFVATHLLDNGRKYKYFCTFCTQGFVKKANLQIHTGHFHRGQTPIIPKPWVDTTSNWEVNTVCNVCNLLFESSERFLEHNMYYYKGQTFTCTFCNQVFQGMYMLNHHNKLVHYTEDMTKQYTYMCDICNEGFTQESQHQAHKLHVHSASSETDTQTLQDHTYAITIGMAGLTNGPTMKYNCEVCHMNFMVEEDLQQHQLEYSNTGDYLCSYCARKCPTNSILNKHESLSHTGGNFTDYYKCHYCEEVLSTCTALKCHEMHFHQKISNPQKSSDNRLIVNPSAKPPGNNRDPFVCTVCDMTFVTLEKLNHHTLEFSNVGQYSCYICSRRFSELYRLEVHKLKHSNLHYILSKYHCPICREGFANPVNVRAHEKHFHKSPTTDQLVPKAAQTLQAVGLNVESGSNSPTKTKSIMCPDCLVSYDSESALKRHQSRFLNEGRHVCEYCGRRFQLMKMLTQHLKRHTTGIERLKHACSECKDRFGNQVSRYQHIVHLHGKSKWKGDVPNFIKFRHDATAAAKRLEASSHYIGKPITTASPVSSLSDGDGRSSSPTDQLIYAGEPVATASPADGFSDGQERTLSPTNQQANMTVAVAQQETSYLKLERDGKIIQGTMHDKLQSLTEGVINCWICGRNFTTNDDLEIHLKDAHVKICPINSEDAADSAKNDTDAVQIVWEKMSDAAKLCEDQSDSEVHILCSSYCAPIMNYDKTVANMESADLSVNNTYLKIKDFAKLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00866260;
90% Identity: iTF_00866260;
80% Identity: -