Basic Information

Insect: Lasioglossum vierecki
Gene Symbol: -
Assembly: GCA_028455595.1
Location: CM052341.1:4081117-4087106[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.12 9.8 7.1 0.1 2 20 148 166 147 168 0.93

2 19 9.2 7.7e+02 1.1 0.6 2 21 176 195 176 196 0.93

3 19 0.078 6.5 7.6 2.5 2 23 212 234 212 234 0.90

4 19 0.0014 0.12 13.1 3.1 1 23 593 616 593 616 0.95

5 19 0.0024 0.2 12.4 0.9 2 23 649 670 648 670 0.95

6 19 7.5 6.3e+02 1.4 3.8 1 22 807 828 807 828 0.94

7 19 0.34 28 5.6 1.9 1 20 835 854 835 858 0.88

8 19 0.049 4.1 8.3 3.5 1 22 868 889 868 891 0.89

9 19 5.1 4.3e+02 1.9 0.1 2 19 914 931 913 934 0.89

10 19 0.07 5.9 7.8 2.8 1 23 941 964 941 964 0.96

11 19 4.5e-05 0.0038 17.8 0.5 1 23 975 998 975 998 0.94

12 19 0.17 14 6.5 0.1 1 21 1031 1051 1031 1052 0.95

13 19 1.1 88 4.1 2.0 1 23 1059 1082 1059 1082 0.89

14 19 0.00072 0.06 14.0 0.3 1 20 1144 1163 1144 1165 0.95

15 19 0.0083 0.7 10.7 1.6 1 23 1172 1194 1172 1194 0.98

16 19 0.0041 0.34 11.6 1.1 1 23 1204 1227 1204 1227 0.95

17 19 0.0059 0.5 11.1 0.1 2 21 1264 1283 1263 1284 0.93

18 19 0.01 0.87 10.4 2.6 1 23 1291 1313 1291 1313 0.97

19 19 3.3e-05 0.0027 18.2 0.1 3 23 1477 1498 1475 1498 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.12	9.8	7.1	0.1	2	20	148	166	147	168	0.93
2	19	9.2	7.7e+02	1.1	0.6	2	21	176	195	176	196	0.93
3	19	0.078	6.5	7.6	2.5	2	23	212	234	212	234	0.90
4	19	0.0014	0.12	13.1	3.1	1	23	593	616	593	616	0.95
5	19	0.0024	0.2	12.4	0.9	2	23	649	670	648	670	0.95
6	19	7.5	6.3e+02	1.4	3.8	1	22	807	828	807	828	0.94
7	19	0.34	28	5.6	1.9	1	20	835	854	835	858	0.88
8	19	0.049	4.1	8.3	3.5	1	22	868	889	868	891	0.89
9	19	5.1	4.3e+02	1.9	0.1	2	19	914	931	913	934	0.89
10	19	0.07	5.9	7.8	2.8	1	23	941	964	941	964	0.96
11	19	4.5e-05	0.0038	17.8	0.5	1	23	975	998	975	998	0.94
12	19	0.17	14	6.5	0.1	1	21	1031	1051	1031	1052	0.95
13	19	1.1	88	4.1	2.0	1	23	1059	1082	1059	1082	0.89
14	19	0.00072	0.06	14.0	0.3	1	20	1144	1163	1144	1165	0.95
15	19	0.0083	0.7	10.7	1.6	1	23	1172	1194	1172	1194	0.98
16	19	0.0041	0.34	11.6	1.1	1	23	1204	1227	1204	1227	0.95
17	19	0.0059	0.5	11.1	0.1	2	21	1264	1283	1263	1284	0.93
18	19	0.01	0.87	10.4	2.6	1	23	1291	1313	1291	1313	0.97
19	19	3.3e-05	0.0027	18.2	0.1	3	23	1477	1498	1475	1498	0.93

Sequence Information

Coding Sequence: ATGGCTCGAGTTTATGTATATGAACGTCCAGTCGATTCTGTCCTCACTGATGTGTCCTTCTATGAGAAGCAGCAGCACCTTCTTAATGGGGTACGGGTGAAACAAGAGCCATGTGACACGGATGACAAAAGTCAGGACAGTACTTTGCAATTTGCAAATTCTAATGTAAAGATTACCACATCGGCTGAAACGACTATTGAAGGGACACAATTGGTGGACGTTGTAAATAACAAAGAGAATGAGCTTGTATCATCTAAGAACCGTGCCGGTATAGGCAAATCGGATACGGACGTAGTCAATACGAGGAAGCGTAAACGTTTAACATTTGCGAATTTGCCGAAAACGGTGCCTCAGAAAGAGTCGCGACAACACTCCTGTCGTAGTAGCCTTGAACGTATATTTCCGGAACTAGTAGGCAAGGAAATAAGAAATAGTAAAGTGGAATGCGATATATGTTATGTAAGATTTAAAACAGAATTAGCATTTAAAAGACACAGAGCTTATTACCTTGAGTTAGTCTCTCGTACCTGTAATCAATGCTACATGATATGTCAATCGATTGACGGGTTAACGGTTCATAAACGGCTAGATGAATGCAAGGTAAAATCACATTCGGACTGGACAAAAGAAAATACTTGTGGTTTCTGTAATCGGAAGTTGAAGACGAAACCAAATTTGCAGAGTCACGTGTTTCACATTCATGCTGAATTGTTACAGAATAATTCAAGTGAAGCCAGTGTGTGTGTGTGTGAAACTGATAAAAACAATAAAACTGATACGACCAAAGAAACCAATAAAATCAGTGAACCGCCATTGGAAAAACGCACTAACGATCACGAAGAACATCCTTCTGCACAACAGAAAGGAAAGAGTCCAACCGATAATCTTACAAAAAAGATGAGACAAACAACTATGATAGAGTTCCTTTCACGATTCACGAAGAATGAACACATTTCTCCGAACAAGATTGAACCTACAAGAGAAACTCCAAAAAAAGCAAGTCCCAGACAATCAGAAAGAATAACGGGGAAAGTAGGGGAAACACCGAAAAAAACCACAGTCAAGAAAAATGGAATAATAACAGAGATATTCGATTTCCTGGCAGAAGCTCAGAAAAAGGTTAGACAAAACGGAGCAATAGCAGAATCCGTTTCCACTCCCCGTAATGAGAAAGCGTCGACCATTGATGAAAGTTATGGTTTACGTAGCAGATCTGACAAGGAGAAAAAACCATTTGTCGAGATACACATGGGTTCTGACGAGATGATAACCTTATTGAATAAAAAAATTAAAATCGAATCAAAAGATGAATATCCTATACCACGGAATAAATCCTATAACTTTAGACGCGTGACAAGAAATAGTCGTGATCAACCGCCGAGTGACGTGGGTAAACGGCTTCCTGTTAATAGAAAACGTAATAGTAAAGGGCAATTCGTTGTCCATTCTAAACAGATATCGGCTCGATTGAAGGTGCTGCAACTGAGAGCTAAGTTTAAATGTAAAGACTGCAAAGTTAATTTAGTTAGATGCGACACGGTTGTCAAAACAGAAATTGTCGATTATGTCCCATCAACCCCGGTAAACGTATATGATGATATCGAGGAAGTTTGGAGAAAGAAGGTTAACTTAAAGAGAATCCACGTTCCATTGATCAAACTGAACAAGCCAATAAAAGCAAAAGTTAACGATACGTTCCAATCATCAAATCGAGACAACAATCCAGAGAAGACCAATGCATCTCAGTCTAATATTAAGGCTAAATTGCGCAGGATATTCCGGTGTAAAGTCTGTAGGAAATACTTCTCCACGAAGGAGAAGTTATACGAGCATTTGGAATATACTCATGTGTTCTACATATCGAGCGTGTGCAGCGCTTGGTACAAATCCCGAGTCAGATTGCTGAGACACTATTTGTACCAGCACTGCGTTATGAAACGCATGCAGTGCTGCGTGTGCTTCGAGAAATTCGTGTCGCCTGTGTTGTTGAAGCGGCACATGGGTCTGCACTGCATCAAGGTGTTGCAATCGAAGAGGGATAAGGTGTTCAACAAAGAGGTGGTCAAATGTAATGTGAATTCTAGGGCGAACTCGTGCGGGGCGTGCGGTAAACAATTTTGGTTGGGGGCTTGCTTGAGCGAACATCAACAGGTGTGTCAGAAGATGAAGGCGCAATTGCAGAAATTACAGATAGCGCAATGTCTCGTGAAAACGTCTCCAACGAAAAAAACGCTTGAGTCACCGTTGGCTATTGCAGGCGGTACAGTGACCGAGCAGCACCCCATCAAGTTATCCGCTGTCAAGGATCATCCTCGTGAAACCGAATCACCGTCAGTAGCACTGCCTAAAAGATTGCTGAAAGGCATTGCGTTCGCGAAGGGGTACAACATCGATAATACCAGCACGAGCAAAGAGAAGTTCTGCTGCACCACTTGCGGAGCACAATTCTTGAGTTTCCAGAATTTATGTTTGCATGAACGCACTTTCACTAATGCCGCAAAGTTCGTCTGCAGGTGCTGCAATACCGCCTTCCCCACACAGAAATTATTGCAGAACCACTTCGTAGCCACCCACTTGCTCGACAATGGAAGGAGGTACAAGTACTTTTGTACTTTCTGCACACAGGGCTTTGTAAAGAAGACCAATCTTCAGATCCACACGGGACATTTTCACCGTGGTCAAACGCCCATCATTCCCAAACCGTGGGTGGATACTACTTCCAACTGGGAGGTGAATACGGTGTGCAACGTTTGCAATTTGCTATTCGAGTCCAGTGAACGGTTCATCGAACACAACATGTACTACTACAAGGGACAGACATTCACCTGCACGTTCTGCAATCAAGTTTTCCAAGGAATGTACATGCTGAACCATCACAACAAGATGGTTCATTACACGGAGGACATGACGAAACAGTACACGTACATGTGCGAAATCTGCAACGAGGGCTTCACCCAGGAGTCCCAGCTCCAGGCGCATAAATTGCATGTTCATTCGGCATCATCTGAAACCGACACACAGTCCCTGCAAGATCACACCTACGCCATTACGATTGGGATGACAGGATTGACGAATGGACCGACGATGAAATACAACTGTGAGGTTTGCTACATGAACTTCATGGTCGAGGAGGACCTACAACAGCACCAGTTGGAGTACTCCAATACTGGTGACTACCTATGCAGCTACTGCGCCAGAAGATGTCCTACGAACAGCATTCTTAAGAAGCACGAGAGTTTGTCGCACACCGGTGGTAATTTCACTGACTACTACAAGTGTCACTACTGCGAGGAGGTGCTTTCCACGTGTACCGCGTTGAAATGCCACGAAATGCACTTCCACGAAAAGATCTCTAATCCCCAGAAGAGCAGCGATAATCGGTTAACTGTGAATCAGAGTGCCAAACCACCTGGAAACAATAGAGACCCATTCGTTTGCACGGTTTGCGACATGACGTTCGTAAACTTGGAGAAATTGAACCATCATACCTTAGAATTTTCGAACGTCGGTCGGTACAGTTGCTACATCTGCAGCCGGAGGTTCTCGGAGCTGTATCGCCTAGAAGTCCACAAGCTAAAGCACTCGAACTTGCACTACATACTGTCTAAGTATCATTGCCCCATATGTCGTGAGGGATTCGCAAATCCAGTCAACGTTCGGGTGCACAAGATGCATTTCCACAAAAGCCCAACGACCGATCAGTTGGTACCAAAGGCCGCGCAGACCTATCAGGCAGTCGGCCTCAACGTCGAGAGTGGCTCAAACAGTCCGACTAAGAAGAAATCGACAATGTGTCCTGACTGTTTGATATCGTACGATTCCGAGAGTGCTTTGAAAAGGCACCAATCACGCTTTGCAAACGAAGGACGACATGTGTGCGAGTACTGCGGCAGGAGGTTCCAACTCATGAAGGTGCTGACGCAACATTTGAAGAGGCACACTACAGGCATTGAACGCCTGAGGCACGCGTGTTCCGAATGCAAGGATAGATTTGGTAATCCGGTGGCTAGGTATCAGCATATCGTTCATCTTCATGGAAAGAGTAAGTGGAAAGGCGACGTACCTAATTTCATAAAGGTTCGCCATGATAAAGGTACAGCATTACTTCGATTAGAGACCTCATTACATTACAATGGTAAACCTATTACTGCAGCCAGTCCCGTGAGCAGTTTAAGCGATGGTGAGGGAAGGTCCTCATCATCAACTGATCAGCTGATTTACGCTGGCGAACCTATGGTTACAGCCAGCCCCGTAGACGGATTCAGTGATGGTCAGGAACGAATCTTATCACCAACTAATCAGCAGGCGAATATGACTGTAGCGGTACCTCAGCAAGAGACGTCATATTTGAAACTGGAACGTGATGGGAAGATAATCCAGGGGACCATGCACGACAAGTTGCAGTCTTTGACAGAAGGCGTCATCAACTGTTGGATCTGCGGGAGGAACTTCACCACGAACGACGATCTCGAGATACACCTCAAGGACGCGCATGTGAAGATTTGCCCTATCAACTCGGAAGACACTGCCGATTCTGCGAAGAACAATACAGATGCCGTGCAAATCGTTTGGGAAAAGATGTCGGACGCTGCCAAAGTGTGTGAGGACCAGAGCGACTCGGAGGTCCATATTCTGTGCTCGAGTTACTGCGCCCCGATCATGAACTATGACAAAACTGTCGCGAACATGGAATCAGCGGACTTAAGTGTTAATAATACCTATCTCAAGATAAAAGACTTTGCTAAATTGGCGTAA
Protein Sequence: MARVYVYERPVDSVLTDVSFYEKQQHLLNGVRVKQEPCDTDDKSQDSTLQFANSNVKITTSAETTIEGTQLVDVVNNKENELVSSKNRAGIGKSDTDVVNTRKRKRLTFANLPKTVPQKESRQHSCRSSLERIFPELVGKEIRNSKVECDICYVRFKTELAFKRHRAYYLELVSRTCNQCYMICQSIDGLTVHKRLDECKVKSHSDWTKENTCGFCNRKLKTKPNLQSHVFHIHAELLQNNSSEASVCVCETDKNNKTDTTKETNKISEPPLEKRTNDHEEHPSAQQKGKSPTDNLTKKMRQTTMIEFLSRFTKNEHISPNKIEPTRETPKKASPRQSERITGKVGETPKKTTVKKNGIITEIFDFLAEAQKKVRQNGAIAESVSTPRNEKASTIDESYGLRSRSDKEKKPFVEIHMGSDEMITLLNKKIKIESKDEYPIPRNKSYNFRRVTRNSRDQPPSDVGKRLPVNRKRNSKGQFVVHSKQISARLKVLQLRAKFKCKDCKVNLVRCDTVVKTEIVDYVPSTPVNVYDDIEEVWRKKVNLKRIHVPLIKLNKPIKAKVNDTFQSSNRDNNPEKTNASQSNIKAKLRRIFRCKVCRKYFSTKEKLYEHLEYTHVFYISSVCSAWYKSRVRLLRHYLYQHCVMKRMQCCVCFEKFVSPVLLKRHMGLHCIKVLQSKRDKVFNKEVVKCNVNSRANSCGACGKQFWLGACLSEHQQVCQKMKAQLQKLQIAQCLVKTSPTKKTLESPLAIAGGTVTEQHPIKLSAVKDHPRETESPSVALPKRLLKGIAFAKGYNIDNTSTSKEKFCCTTCGAQFLSFQNLCLHERTFTNAAKFVCRCCNTAFPTQKLLQNHFVATHLLDNGRRYKYFCTFCTQGFVKKTNLQIHTGHFHRGQTPIIPKPWVDTTSNWEVNTVCNVCNLLFESSERFIEHNMYYYKGQTFTCTFCNQVFQGMYMLNHHNKMVHYTEDMTKQYTYMCEICNEGFTQESQLQAHKLHVHSASSETDTQSLQDHTYAITIGMTGLTNGPTMKYNCEVCYMNFMVEEDLQQHQLEYSNTGDYLCSYCARRCPTNSILKKHESLSHTGGNFTDYYKCHYCEEVLSTCTALKCHEMHFHEKISNPQKSSDNRLTVNQSAKPPGNNRDPFVCTVCDMTFVNLEKLNHHTLEFSNVGRYSCYICSRRFSELYRLEVHKLKHSNLHYILSKYHCPICREGFANPVNVRVHKMHFHKSPTTDQLVPKAAQTYQAVGLNVESGSNSPTKKKSTMCPDCLISYDSESALKRHQSRFANEGRHVCEYCGRRFQLMKVLTQHLKRHTTGIERLRHACSECKDRFGNPVARYQHIVHLHGKSKWKGDVPNFIKVRHDKGTALLRLETSLHYNGKPITAASPVSSLSDGEGRSSSSTDQLIYAGEPMVTASPVDGFSDGQERILSPTNQQANMTVAVPQQETSYLKLERDGKIIQGTMHDKLQSLTEGVINCWICGRNFTTNDDLEIHLKDAHVKICPINSEDTADSAKNNTDAVQIVWEKMSDAAKVCEDQSDSEVHILCSSYCAPIMNYDKTVANMESADLSVNNTYLKIKDFAKLA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00866939;
90% Identity: iTF_00866939;
80% Identity: -