Lvie000942.1
Basic Information
- Insect
- Lasioglossum vierecki
- Gene Symbol
- bab1
- Assembly
- GCA_028455595.1
- Location
- CM052344.1:4993554-4995518[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.2e-14 4.2e-11 42.6 0.1 2 45 354 397 353 397 0.93
Sequence Information
- Coding Sequence
- ATGGCGAGCACGTcgcaacaatattgcctgcgttggaacaaccaccaatcaaatctgctgacggtggtcgacgaactgctgcagaacgaggcgttcaccgatgttaccctggcggtggacggcggtgcttcggtcaagtgtcacaagatggtgttggccgcctgttcttcctactttcaaaagttattcatcgacctgccgtacaagcatccgatcgtcgtcctgaaagacgtgaaatactccgagatcaaggcgatcctcgagttcatgtaccgaggagaggtgaacgtagcgcaagggcaactggcaggtcttctcaaggtcgccgaggtgctcaaggtcaagggtctagTGGAGGAGAACGGCTCCTCCTTTCAAGGTCGCCGCGAGGAGGCCGAGACCTCGCTGTCTCCTCCACCGGCGATCAGCACGAGCACAACCAGCAGCGCGGCTCACAGCAGCGGCCACACGTCGCCGCCACACTCCACTGGCTCCTCGTACACCGTCTACGGGAAATCGTCGTCAGACAGGGGCCCGAATCGACTCCCTTCGAACATGTGGTCCCTCGCAGGGATTCCTATTTCCCCTCATATCGGCTCGAACCAGGTAGCACCGCCGCATCTTTTCCAACACTCGATTTTGACCGGCTCCTATGACAACGGCTTCGAAACCTCCCCGCTTAAACGAAAGAAGCTCTTGAATATGCTGATGAACAGGGACACACCGATGAACAGGGACACACAGATCCTGAGGACGGTACTCGGCCAGGGACACGCGGACAGCTCGCAAGGCATACCTCTGTTGCACCCGGACCGCCACGAGAACAATCACTTCAGGAACACGAGCAGCAACGGCTCATCCAACGATAACGACAGACGCAACAGTCAGGACATCTCGACTCAGGGGGAGCCCGAGCACAGCCCCTACACGGACGTGTCCATGATGGACGAGGACGATAAGCAGCCCCTCACGCAGTCCTATCCCGAGGACGTTAAATCCGGAATCGTGAATTGCGTTCCAACGCAGAAGCCCGAATGGAAACGGTACAAACAGTACACGCGGAACGACATCGCGTGTGCGATCGAGGCGGTGCGCTCGGGGATGACGGCGTTGCAGGCAGCACGTAAGTACGGCGTACCATCTCGAACCCTTTACGACAAGGTGAAGAAACTCGGGATCAAAACGTCGCGGCCGTTCAAACGCGCTTCGAATGGCAGCGGCGCTTGTTTCCCGTACGGTATCGGCGGCAACGTAAACGGCAGCATATACGGCGGCGCGTTGTCCGAGAACGAGAACGAAAACGAGAACAGCAACGCGGTTCTCGAGAGTCCAGGCACGATCCTGGACGCTTACAAAGCCAGGGAGGGAGGTCCCATCGATCGTGAGATGTTGGATATCCCCCGGTGTAGTCCCAGCTCCGTTATACACTCCGCGAAACAGCAACAGCAAATCAACGAAGACCAGGTCGAGGATCTTTCCGTGGCTCGTAAGTCCGTGTCGGATGTTTGCGTGATAGTCCCACCACCAACGACGCTCATCAAAGAGGAGAAAGACGTTGGCTCCGATTCCTGTAACCATAACTAA
- Protein Sequence
- MASTSQQYCLRWNNHQSNLLTVVDELLQNEAFTDVTLAVDGGASVKCHKMVLAACSSYFQKLFIDLPYKHPIVVLKDVKYSEIKAILEFMYRGEVNVAQGQLAGLLKVAEVLKVKGLVEENGSSFQGRREEAETSLSPPPAISTSTTSSAAHSSGHTSPPHSTGSSYTVYGKSSSDRGPNRLPSNMWSLAGIPISPHIGSNQVAPPHLFQHSILTGSYDNGFETSPLKRKKLLNMLMNRDTPMNRDTQILRTVLGQGHADSSQGIPLLHPDRHENNHFRNTSSNGSSNDNDRRNSQDISTQGEPEHSPYTDVSMMDEDDKQPLTQSYPEDVKSGIVNCVPTQKPEWKRYKQYTRNDIACAIEAVRSGMTALQAARKYGVPSRTLYDKVKKLGIKTSRPFKRASNGSGACFPYGIGGNVNGSIYGGALSENENENENSNAVLESPGTILDAYKAREGGPIDREMLDIPRCSPSSVIHSAKQQQQINEDQVEDLSVARKSVSDVCVIVPPPTTLIKEEKDVGSDSCNHN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01071088;
- 90% Identity
- iTF_00866627;
- 80% Identity
- iTF_00866102;