Basic Information

Insect: Lasioglossum marginatum
Gene Symbol: -
Assembly: GCA_028455795.1
Location: CM052278.1:3720185-3726362[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.04 3.8 8.4 0.2 2 23 147 169 146 169 0.93

2 19 0.017 1.6 9.6 0.4 2 20 175 193 175 195 0.93

3 19 0.12 12 6.9 5.7 2 23 211 233 211 233 0.89

4 19 0.0003 0.028 15.1 1.3 1 23 584 607 584 607 0.96

5 19 0.0029 0.28 11.9 0.7 2 23 640 661 639 661 0.94

6 19 0.66 63 4.5 1.7 1 22 798 819 798 819 0.95

7 19 0.043 4 8.3 2.9 1 23 826 849 826 849 0.90

8 19 7.9 7.5e+02 1.2 3.9 1 22 859 880 859 882 0.89

9 19 0.16 15 6.5 3.3 1 23 932 955 932 955 0.93

10 19 0.89 84 4.1 4.3 1 23 966 989 966 989 0.88

11 19 0.55 53 4.8 0.1 1 21 1022 1042 1022 1043 0.94

12 19 0.00012 0.011 16.3 0.1 1 21 1135 1155 1135 1156 0.95

13 19 0.0034 0.32 11.8 3.1 1 23 1163 1185 1163 1185 0.98

14 19 0.019 1.8 9.4 2.9 1 23 1195 1218 1195 1218 0.94

15 19 0.004 0.38 11.5 0.1 2 21 1255 1274 1254 1275 0.94

16 19 0.0026 0.25 12.1 4.7 1 23 1282 1304 1282 1304 0.97

17 19 3.3 3.1e+02 2.3 0.2 1 23 1313 1336 1313 1336 0.86

18 19 0.1 9.5 7.1 0.3 1 23 1501 1524 1501 1524 0.96

19 19 0.00027 0.025 15.2 0.1 2 23 1546 1568 1545 1568 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.04	3.8	8.4	0.2	2	23	147	169	146	169	0.93
2	19	0.017	1.6	9.6	0.4	2	20	175	193	175	195	0.93
3	19	0.12	12	6.9	5.7	2	23	211	233	211	233	0.89
4	19	0.0003	0.028	15.1	1.3	1	23	584	607	584	607	0.96
5	19	0.0029	0.28	11.9	0.7	2	23	640	661	639	661	0.94
6	19	0.66	63	4.5	1.7	1	22	798	819	798	819	0.95
7	19	0.043	4	8.3	2.9	1	23	826	849	826	849	0.90
8	19	7.9	7.5e+02	1.2	3.9	1	22	859	880	859	882	0.89
9	19	0.16	15	6.5	3.3	1	23	932	955	932	955	0.93
10	19	0.89	84	4.1	4.3	1	23	966	989	966	989	0.88
11	19	0.55	53	4.8	0.1	1	21	1022	1042	1022	1043	0.94
12	19	0.00012	0.011	16.3	0.1	1	21	1135	1155	1135	1156	0.95
13	19	0.0034	0.32	11.8	3.1	1	23	1163	1185	1163	1185	0.98
14	19	0.019	1.8	9.4	2.9	1	23	1195	1218	1195	1218	0.94
15	19	0.004	0.38	11.5	0.1	2	21	1255	1274	1254	1275	0.94
16	19	0.0026	0.25	12.1	4.7	1	23	1282	1304	1282	1304	0.97
17	19	3.3	3.1e+02	2.3	0.2	1	23	1313	1336	1313	1336	0.86
18	19	0.1	9.5	7.1	0.3	1	23	1501	1524	1501	1524	0.96
19	19	0.00027	0.025	15.2	0.1	2	23	1546	1568	1545	1568	0.92

Sequence Information

Coding Sequence: ATGGCTCGAGTTTATGTATATGAACGTCCAGTCGATTCTGTCTTGGCGGATGTGTCCTTCTATGAGAAGCAGCGTCTTCTTACTGGGGTACGGGTGAAACAAGAGCCACATGACCCGGATGACAGTATTTTGCCATTGGCAAATACTAATGTAAAGATTACCACATCGGCTGAAACGTCTGTTCAAGGGACACAACTGGTGGACGTTGTAAATAACAAAGAGAATGAACTTGTATCATCTAAGAACCGTGCCGGTATAGGCAAATCGGATACGGACGTGGCCAATACGAAGAAGCGTAAGCGCTTAACATTTGAGAATTTGAAAAAGCCGGAAACGGTGCCTGAGCAAGTATCGCGACAACATAAAAGGGCCTGCCGTAGTAGCCTTGAACGTATACTTCCGGAACCAGTAAGCAAAGAATTAGAAATTACGGACGTGGAATGCGGCGTATGTTATTTAAAATTTGGGACAGAGAGAGCACTTAAGAGACACAGAGAATATTACCATGAGATAGTCGATCGTACCTGTGATAAATGCCACACGATATTTCGATCGATTGACGGGTTAAAGGCTCATAAATTGCTAGATAAATGCAAGGTACAATTATATACGAACTGGAAAAGCGAAAATGTCTGTTGTTTCTGTAATCGGAAGTTCTCGACCAAACCATATTTACAGAGTCACGTGTTCCACACTCATACTGAATTGTTGCGGAATATTACAAGTGAAGCCAGTGAAACTGATACGACTAAGGAAACCGATAAAATCAGTGAACCGCCATTGACAGAGCGCACTAACGGTCACGTAGAAGATCCTTTTGTACAGCAGAAAGGAAAGAGTCCAGCCGATAGTCCTAGCAAAAAAATGAGACAAACAACTATGATAGAGTTCCTTTCAGGATTCAGGAGAAAAGAACACATTTCTGCGAAAAAGGTTGAACCTACAAGAGAAACCACGAAAAAAGTAAGTGCTAAACAATCAGGAAGAATAACGGAGAAAGTAGGGGAGACACCGAAAAAAGCCACACCTAAGCAAAATGGAACAATAACAGAGATATTCGATTTCCTGGCAGAAACTCCGAAAAAGATTAGACAAAACGGAGCAGTAGCAGAATTCGTTTCCACTCCCCGTAATGAGAAAACACGGACTATTGGTGAAAGTTCTGGGTTAAGTAGCAAAACTGGCAAAGAGAAAAAACCATTTGTCGAGATACACATGGATTCTAATGAGATGGTGGCCTTATTGCATACAAAAGTTAAAATCGAACCAGAAAATGAATATATCAATCCTACGCCACAGAATGGATTCTACAACCTTAGACGCGTGACAAGAAATAGTCATGATCGACCGCCGAGTGACGTGAATACACGGTCTTGTGTTCATAGAAGACGTAATTCTAAAGGGCAGTTCATTGCCCCGCCTAAAGAGATATTGGCTCGGTCGAAGGAGCAGCTACTGAGGGCCAAGTTCAAATGTAAACACTGCAAAGTTAATCTAGTTAGATGCGACATGGTTGTCAAAACAGAAATTGTCGATTATGTCCCGTCAACTCCGGTAAACGTAGATGTTGATATCGAGGAGGTTTGGAGAAAGAAGGTTAACTTAAAGAGAATCCACGTTCCATTGGTCAGATTGAACAATCTGATAAAGGTAGATGTTAACGATACGTTTCAATCATCAAATCGAGAGAACAATCCAGAGAAGCCCAATGCATCTCAGTCTAATGTTAAAGCTAAATTGCGTAAGATATTCCGGTGTAAAGTCTGCTGGAAATACTTCTCCTCAAAGGAGAAGTTATACGAGCATTTGGAAGTTACTCATGTATTCTACATATCGAGCGTGTGCAGCGCTTGGTACAAATCCCGAGCCAGATTGCTGAGACACTATTTGCACCAGCACTGCGTTATGAAACACATGGAGTGCTGTGTGTGCTTCGAGAAATTCGTATCGCCTGTGTTGTTGAAGCGGCACATGGGTCTGCACTGCATCAAGGTGTTGCAATCGAAGAGCGATAAGTTGTTCAATAAAGAGGTGGTCAGGTGTAATATGAACTCTAGGACGAACTCGTGCGGGGCGTGCGGTAAGCAATTTTGGTTGGGGGCTTGCTTGAGCGAACATCAACAGGTGTGTCATAAGATGAAGGCGCAATTGCAGAAATCACAGAAAGCGCAGTGTCCCATGAAATCGTCCCCAACGAAAAAAACGCTTGAGTCACCGTTGGCTGTTGCAAGCGGTACAGTGACCGAGCAGCACTCCATCAAGTTATCTCCTGTCAAAAATCATTCTCGTAGAACCAAATCACCGTCAATAGCACAACCGAAAAGATTGCTGAAAGGCGTCGCGCTCGCGAAGGGGTACAACATCGACAATACCAGCACGAACAAAGAGAAGTTCTCCTGCACCACTTGCGGCGCGCAATTCCTGACTTTCCAGAATTTATGCTTGCACGAACGAACTTTCACTCAAGCCGCTAAGTACACCTGCAGGTGCTGCAATACCGCCTTCACCACACAGAAATTATTGCAGAACCACGTCACAGCCACCCACATGCTCGACACTGTAAAGAAGTACAAGTACTTTTGTACATTCTGCACACAGGGCTTCCTAAAGAAGATCAATCTTCAGACCCACACGGGACACTTCCACGGTGGTCAAACGCCCATCATTTCCAAACCGTGGTTGGATACTACTTCTAACTGGGAAGTGAATACGGTGTGCAACGTTTGCAATCTGATGTTCGAGTGCAGCGAACGGTTCATCGAGCACAACATGTACTACTACAAGGGACAGATGTTTACCTGCACGTTCTGCAACCAAACCTTCCAGGGAATGTACATGCTGAACCATCACAACAAGTTGGTGCATTACACAGAGGACATGACAAAACAGTACACGTACATGTGCAACACCTGCAACGAGGGCTTCACCCAGGAGTCCCAGCACCACGCGCATAAATTGCACGTTCATTCGGCAGCGCCCGAAACCAGCACACAGTCCCTGCAAGATCACACCTACGCCATCACGATTGGGATCGGAAGATTGACGAACGGGCCGACGATGAGATACAACTGTGAGGTTTGCTACATGAACTTCATGATCGAGGAGGATCTACAGCAGCACCAGTTGGAGTACTCCAATAATGGTGACTACCTATGCAGCTACTGCGCCAGAAGATGTCCTACGGACAGCATCCTCAGCAAGCACGAGAGTCTGTCGCACACCGGTGGCAATTTCACCGATTGCTACAAGTGTCGCTACTGCGAGGAGGTGCTTTCCACGTGTACAGCGTTGAAATGCCACGAAATACACTTCCACCAAAATATCTCTAATCCCCAGATGAGCAGCGATAATCAGCCAATCGTGAATCAGAGTGCAAAACCAACTGGAAACGTTGGGGACCCATTCGTCTGTCCGGTTTGTGGCATGAAGTTCGTAACTTTGGAGAAATTGAACCATCATATCTTAGAATATTCGAACGTCGGTCTGTACAGTTGCCACATCTGCAGTCGGAGGTTCTCGGAGCTGTATCGCCTAGAAGTCCACAAGCTAAAGCACTCGAACTTGAACTTCATACTGTCTAAGCATCACTGCCCCATATGTCGTGAGGGATTTGCAAATTCAGTCAACGTTCGGACGCACGTGATGCATTTCCACAAAAGCCCAGCGACCGATCAGTTGGTAGCAAAGGACGCTCAGACCTTCCAGGCAGTCGACCTCAACGGCGAGACGGCCTCAAACAGTTCGCCTAAGACGAAGTCAACAAAGTGTCCTGACTGTTTGGTGTCGTACGATTCCGAGAGTGCTTTGAAAAGGCACCAATCACGCTTCGCGAACGAAGGACAACATATCTGCGAGCACTGCGGCAGGAGGTTCCAATTCGTAAAACTGCTGAAGGAACATTTGAGGAGGCACGCTGCAGGCATTGAACGCCTGAGGTACGCGTGTTCCGAATGCGACGATAGATTTGGTAATCCGGTGGCCAGATATCAGCATATCGTTCATCTTCATGGGAAGAGTAAGTGGAAAGGCGACGTACCTAATGCCATAAAGGCTCGCCACGATGCTGAAGCTGCTGCTGAAAAATTAGGGGATGCGAATGCCGATGTATCATTGCTTCGATCAGACACATCAACGTATTACACTGGTGAACCTATTGCTACAGCCAGTCCCGTGAGCAGATTAAGCGATTGTGAGGGAAGGCCCTCATCAACTGATCAGCTGATTTACTCTGGCGAACCTGTGGCTACAGCTAGCCTCGTAGACGGATTAAGCGATGGTCAGGGAAGATCCCCATTACCAACTGATCAACTGACTTACTCTGGTGAACCTCCAGCGACCCCCACACTATCAAATATTGAACCTGTGGCTACTGCCAGTCACGTGAACGGATTAAGCGATCCTCAGGGAAGATCCTCATCATCAACTGATCAGCAGGCAGATATGACTGTAGCGGCAGCTAAGCAAGAGACACTTGAAAATTTAGAGGGGACGATTACGTGCTACGTTTGCCCCCTCTGCGACTTCAACGTCCAAACGCTGGAAAAATTTATGTCACATTTGAAACTGGAACATGATGGGAAGATGATCCAGGGGACCATACACGACAAGTCGAAGTCTTCAACAGGAGGCGTCATCAGCTGCTTGATCTGCGGAATCACCTTCACCACGGAAGACGATCTCAAGGTACACTTCAAGGACGCGCACGTGAAAATTTGCCCTGCCAACACGGAAGACGCTGCCGATTCTGCGGAGAACAACACAGAGGCCGTGCAAATCGTTTGGGAGAAGATGCCGGACGCTAAGCTGTTTGGGGACCAGAGCGACTCGGAGATCCGTATTCTGTGCTCGAGTTACTGCGCCCCAATCATGAACTATGATAAAACTGTCGCGAAGACGGAATCAGTGGATTTACGTGTTGATGATACCTCTCTTAGGATCAAAGACTTTGCCAAATGGATGTAA
Protein Sequence: MARVYVYERPVDSVLADVSFYEKQRLLTGVRVKQEPHDPDDSILPLANTNVKITTSAETSVQGTQLVDVVNNKENELVSSKNRAGIGKSDTDVANTKKRKRLTFENLKKPETVPEQVSRQHKRACRSSLERILPEPVSKELEITDVECGVCYLKFGTERALKRHREYYHEIVDRTCDKCHTIFRSIDGLKAHKLLDKCKVQLYTNWKSENVCCFCNRKFSTKPYLQSHVFHTHTELLRNITSEASETDTTKETDKISEPPLTERTNGHVEDPFVQQKGKSPADSPSKKMRQTTMIEFLSGFRRKEHISAKKVEPTRETTKKVSAKQSGRITEKVGETPKKATPKQNGTITEIFDFLAETPKKIRQNGAVAEFVSTPRNEKTRTIGESSGLSSKTGKEKKPFVEIHMDSNEMVALLHTKVKIEPENEYINPTPQNGFYNLRRVTRNSHDRPPSDVNTRSCVHRRRNSKGQFIAPPKEILARSKEQLLRAKFKCKHCKVNLVRCDMVVKTEIVDYVPSTPVNVDVDIEEVWRKKVNLKRIHVPLVRLNNLIKVDVNDTFQSSNRENNPEKPNASQSNVKAKLRKIFRCKVCWKYFSSKEKLYEHLEVTHVFYISSVCSAWYKSRARLLRHYLHQHCVMKHMECCVCFEKFVSPVLLKRHMGLHCIKVLQSKSDKLFNKEVVRCNMNSRTNSCGACGKQFWLGACLSEHQQVCHKMKAQLQKSQKAQCPMKSSPTKKTLESPLAVASGTVTEQHSIKLSPVKNHSRRTKSPSIAQPKRLLKGVALAKGYNIDNTSTNKEKFSCTTCGAQFLTFQNLCLHERTFTQAAKYTCRCCNTAFTTQKLLQNHVTATHMLDTVKKYKYFCTFCTQGFLKKINLQTHTGHFHGGQTPIISKPWLDTTSNWEVNTVCNVCNLMFECSERFIEHNMYYYKGQMFTCTFCNQTFQGMYMLNHHNKLVHYTEDMTKQYTYMCNTCNEGFTQESQHHAHKLHVHSAAPETSTQSLQDHTYAITIGIGRLTNGPTMRYNCEVCYMNFMIEEDLQQHQLEYSNNGDYLCSYCARRCPTDSILSKHESLSHTGGNFTDCYKCRYCEEVLSTCTALKCHEIHFHQNISNPQMSSDNQPIVNQSAKPTGNVGDPFVCPVCGMKFVTLEKLNHHILEYSNVGLYSCHICSRRFSELYRLEVHKLKHSNLNFILSKHHCPICREGFANSVNVRTHVMHFHKSPATDQLVAKDAQTFQAVDLNGETASNSSPKTKSTKCPDCLVSYDSESALKRHQSRFANEGQHICEHCGRRFQFVKLLKEHLRRHAAGIERLRYACSECDDRFGNPVARYQHIVHLHGKSKWKGDVPNAIKARHDAEAAAEKLGDANADVSLLRSDTSTYYTGEPIATASPVSRLSDCEGRPSSTDQLIYSGEPVATASLVDGLSDGQGRSPLPTDQLTYSGEPPATPTLSNIEPVATASHVNGLSDPQGRSSSSTDQQADMTVAAAKQETLENLEGTITCYVCPLCDFNVQTLEKFMSHLKLEHDGKMIQGTIHDKSKSSTGGVISCLICGITFTTEDDLKVHFKDAHVKICPANTEDAADSAENNTEAVQIVWEKMPDAKLFGDQSDSEIRILCSSYCAPIMNYDKTVAKTESVDLRVDDTSLRIKDFAKWM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00865572;
90% Identity: -
80% Identity: -