Lmar016791.1
Basic Information
- Insect
- Lasioglossum marginatum
- Gene Symbol
- -
- Assembly
- GCA_028455795.1
- Location
- CM052253.1:10144197-10149014[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 6.7 9.3e+03 -3.3 0.1 28 40 133 145 133 148 0.64 2 5 1e-12 1.4e-09 37.7 0.0 1 39 366 405 366 409 0.90 3 5 3.2e-12 4.4e-09 36.1 0.1 2 39 421 458 420 461 0.94 4 5 1.2e-18 1.6e-15 56.7 0.0 2 45 476 520 475 520 0.97 5 5 1.3e-18 1.8e-15 56.5 0.1 1 42 527 569 527 570 0.97
Sequence Information
- Coding Sequence
- ATGTCCGAGGACATTTCCCGTACAACGTTCTTCCGAAATACTTCTGCAAGTTCGCTGTCTCGTTCTGCTCTGATCTTCAGTTTCTGCGAAACCGTCGCAGCCAATACAATGCTGAAATTTGATTATCTGGTTGCCGTTTATTGCGTTGGTCTAGAGAACGCGGGTACAAGTACACGGTGTATACAACATCCTAATCGTCAACAGCTCGCGACCTTGCCGTTGACAGTTGCGCGGTGTGAACAAATAACTTACGGTATGTTTGTGATTTTGTTGCAGTCGTTATTGAAAACGGCAGATCAGCTGAAGATCAAGGGCCTGTGCGAGGTGCCGGAGAGCAGGGACGGTCCGCCATCGGTTAGTCTGAGCTCGCCGCCACGGGAACCAGGCACTCCCAGGATAAACTTCAGCAAGTTAAAGAGGCGGTACAAACGAGCGAGGACCACGTTCGAGCCTCGCGCAACGGATTCGAGGCACTACGACAGATACAAAGAGGAGGAATCGAACGGGAATTACAATCCGGAGAACAAAGAAAATCACAGAGACTGGCAGACCGAAGATGAAGATTGCACGGAGGCCACAACAGCAACAGTAGTCTTGGAAACGTGCCAACGGACCAATAGCAATAACAACAATAATAACAACGGTAACGGTGCAAACAACAATAATAACGGTGACATGTTCTGTCATACAGGTCTCGGACACTATGGACACCATCCGGATCCTGGGGAGGTCGATCTACCCCCAGAGACCCAACCCACCCCACCTAGCGCCACATTGGTGGGCACTACGATCACCCACCTGAGGGATCCGGATCACCATTCCACAGAGATTCAGAACTGTGATAGTGTGAAGATAAAGTTCGAAACGTTGCACACGATGGACTCGTCGGACACAATCGACATCGACAGCCACATGTCGGACCGGGCGAGTGTCAGTTCGAAGAACGCAGCAGACAGCGACAACATGATGATGATCACGCCGGAGCTGCTTGGTTTAATGCCCTCTGGAAGTTCCGTCCACTCGGATTCCGGTGAAAACAACTCGAGAGGCCATTCGGGACAGTCGAGCTCTCATCATCACGGTTCGAAATCGTGGACCCAGGAAGATATGGACGCCGCTTTGGAAGCGTTAAGGAACCATGACATGAGCTTGACCAAAGCCTCCGCAACCTTCGGCATACCATCGACGACATTATGGCAAAGAGCGCACCGGTTAGGCATAGACACACCAAAAAAGGATGGACCAACGAAATCGTGGAGCGACGAGAGTCTGAACAACGCCCTCGAAGCGCTGAGAACAGGCACGATCTCAGCTAACAAGGCGTCGAAAGCGTTTGGAATACCTTCGAGCACGTTGTACAAAATCGCGAGGAGGGAAGGCATCAGATTGGCTGCGCCGTTTAACGCCAGTCCTACCACATGGTCGCCCGCTGATCTGGACCGCGCTTTAGAAGCAATAAGGTCTGGTCAAACGTCTGTGCAGAGAGCTTCCACCGAATTCGGTATTCCAACAGGGACCTTGTACGGTAGATGTAAGAGGGAAGGAATCGAATTGAGCAGAAGTAATCCTACGCCATGGAGCGAGGATGCTATGACAGAAGCACTCGAAGCCGTCAGACTGGGACACATGAGCATCAATCAAGCAGCCATTCACTACAATCTACCCTATTCGTCGCTATACGGTCGGTTTAAGAGGGGGAAGTACGAAGAACCTGCAGTCGGTGATCTATCGCAAGACGGGAGCAATCCACATTTTCATCAAAGTCCGAATCAGAATCATTCGTCCGCCGTTCCCGATCAAATGCCCTACCAAGGCAGCTGA
- Protein Sequence
- MSEDISRTTFFRNTSASSLSRSALIFSFCETVAANTMLKFDYLVAVYCVGLENAGTSTRCIQHPNRQQLATLPLTVARCEQITYGMFVILLQSLLKTADQLKIKGLCEVPESRDGPPSVSLSSPPREPGTPRINFSKLKRRYKRARTTFEPRATDSRHYDRYKEEESNGNYNPENKENHRDWQTEDEDCTEATTATVVLETCQRTNSNNNNNNNGNGANNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSVHSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPAVGDLSQDGSNPHFHQSPNQNHSSAVPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00306165;
- 90% Identity
- iTF_00306165;
- 80% Identity
- -