Lfig012987.1
Basic Information
- Insect
- Lasioglossum figueresi
- Gene Symbol
- Trl
- Assembly
- GCA_028455805.1
- Location
- CM052202.1:9932481-9934078[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.5e-18 3.7e-14 52.7 0.1 21 49 2 30 1 33 0.96 2 2 1.4 9.7e+03 -3.0 0.0 2 12 65 75 64 79 0.62
Sequence Information
- Coding Sequence
- ATGTCCGATCAGCCAGCGCCTTGTCCACTGTGCGGTGCAATTATACGCCAGTCACGAAATCTGAGAAGACATTTAGAACTTCTCCACTTTGGTTTCGGTAGCAACGGTAAATCCAGTGTCCACGCCAGACACCGAAGGACCAGCAGAACAAACGATCTCGTACGATCCACGTTAGCGTTTATTTGTCCGCCGCACATCACGAGGACCGATCATCCAAGAACTATTGAGAACAATGACTTCTCGACGTCTCTTTCCATTGCTTCGACGCTCGCTTCCAATGTTTCAGGAGGTTTGGCGGGACCAAGTTCGAACTCAGTCGCAACCGGAGATCAAGGTACGAGTTCTGCGCTACTTCCAGGCCCAAGCTCGTCCGCCACTTCCACCACTTCTGTTAATAGCGGGATATACGCATATTCGTCGGACAGTAATGTCAATACGTTGAATTGTGTGTCACCTCCGACATCGTCTCTGCCACCATCGACCCTTTCCTCTCCACACGACATGCTCCGATACGGTGAAATTTTGAGAGCTGGTATTGCGTACCACGAATTCTCGAGATAG
- Protein Sequence
- MSDQPAPCPLCGAIIRQSRNLRRHLELLHFGFGSNGKSSVHARHRRTSRTNDLVRSTLAFICPPHITRTDHPRTIENNDFSTSLSIASTLASNVSGGLAGPSSNSVATGDQGTSSALLPGPSSSATSTTSVNSGIYAYSSDSNVNTLNCVSPPTSSLPPSTLSSPHDMLRYGEILRAGIAYHEFSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00183630;
- 90% Identity
- iTF_00762917;
- 80% Identity
- -