Basic Information

Insect: Lasioglossum calceatum
Gene Symbol: -
Assembly: GCA_963966675.1
Location: OZ016539.1:25335728-25338023[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.6 66 4.9 1.1 2 23 132 153 131 153 0.93

2 11 0.011 1.2 10.3 3.2 2 23 225 246 224 246 0.90

3 11 0.00036 0.039 15.0 1.5 1 23 394 416 394 416 0.98

4 11 2.6e-06 0.00028 21.7 1.2 1 23 422 444 422 444 0.98

5 11 8.9e-06 0.00097 20.1 2.4 1 23 450 472 450 472 0.98

6 11 1.5e-05 0.0016 19.3 1.4 1 23 489 511 489 511 0.98

7 11 1.8e-08 1.9e-06 28.6 1.1 2 23 518 539 517 539 0.98

8 11 8.1e-08 8.8e-06 26.5 1.3 1 23 545 567 545 567 0.98

9 11 1.3e-07 1.4e-05 25.8 3.9 1 23 573 595 573 595 0.98

10 11 0.0012 0.13 13.4 5.5 1 23 601 623 601 623 0.96

11 11 1.1e-05 0.0012 19.8 5.5 1 23 629 651 629 651 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.6	66	4.9	1.1	2	23	132	153	131	153	0.93
2	11	0.011	1.2	10.3	3.2	2	23	225	246	224	246	0.90
3	11	0.00036	0.039	15.0	1.5	1	23	394	416	394	416	0.98
4	11	2.6e-06	0.00028	21.7	1.2	1	23	422	444	422	444	0.98
5	11	8.9e-06	0.00097	20.1	2.4	1	23	450	472	450	472	0.98
6	11	1.5e-05	0.0016	19.3	1.4	1	23	489	511	489	511	0.98
7	11	1.8e-08	1.9e-06	28.6	1.1	2	23	518	539	517	539	0.98
8	11	8.1e-08	8.8e-06	26.5	1.3	1	23	545	567	545	567	0.98
9	11	1.3e-07	1.4e-05	25.8	3.9	1	23	573	595	573	595	0.98
10	11	0.0012	0.13	13.4	5.5	1	23	601	623	601	623	0.96
11	11	1.1e-05	0.0012	19.8	5.5	1	23	629	651	629	651	0.99

Sequence Information

Coding Sequence: ATGTTTATCGTGACGAAAGAGATCGACAGCGAGAACATCGGTAAATTATGTCGGACGTGTTTAAGAGAGGACGGCGACAAAATGATCTGTTTGTTCGTGGGACCGGCTGGCTCGTCTCTCGCTGCAAAGCTGCGATCTCTGTCATGTTTGGACGTGTGGCAGGGCGATGGCCTCCCGGAGAAGATGTGCGATCGCTGCGTGACCAGAGCAGAGTCTGCCTTGCTCTACAGGGAACAGTGTCGAGCCGCTGACAGAGCATTGAGACAAGCTGCTGTAAAGGTGTCCGGTTTAGCCGCTTACACAACAGTTCCTGGATGCAAGCTGTACCAGCAGAACCAAAGCTTCCAGCCAGTCCCGATCCCGGTTCAGGTTCAAAATACTCATAAAACGTTAAAATGCATCGAATGCGGCATCCTATGTGCAACTTATCAAGAATTGTGCGCGCACGGTAGATCACATTTACCGTTGATGCAGGAGAACATGCCAGCGCAGCGTGTGCGCGTAGCAGAATCTCAGAATCCCTATCTGAACTTCAATTTCAGCCATTTCAGTTCGAATCTGAGCGGAGAGACGCTACCGAACCCGCCGTTGTCTCCCTTCATCAGATCGAACATGATTCCACAGATGATCCCGATGAACGCGGAGAATTCTAGCCGGGCCGCTTGCGCGTTGCACTGTTCTCTGTGCAATCACACGTTCACCAACAGGATGCAGCTGATGAGCCACAACATCGCTCACAGCACGGAGAACATAGACATGTCCTGCGACAACGAGAACATAGACATCTGCGAGAATTCCAATCAAATTCCTCAGAACTTGAGCTACGGGAGGTCGATCGACTCTGTTGAGAATTCTGTGGAGAATTCCATTCAGAACTTGTCGTACGGTAAGTCTGGGACGAACGCAGCCGGGCAACCGCACAGCGTCGGCTTTCCCGATAACATGGATCTGGAAGAGATTCACGGGTCGAACGGGAGCTCCGAGCGACTCGAAAATACACCGATGCATCATCCAGGGGATGACATACTCGACACCCGTGCGTTGAGGTTCGACAAAGAGCTCGAGCGTGCCGACAACAAGGAAAACATCGGTGGCTACGAGATGTGCCCTGGCGATTTGAATTACGCGTCGAAGGAACACGTCGAGCAAGACAATTCAGTGAGCGCGGAGGCAAAGAGATACAAGTGCGAGGCGTGCTCGAAACTGTTCTCTCAGAGATCGAAACTAGTGACCCACCGGCTGTCGCACTCCGGCCAGCAGCCGTTCAAGTGCCAAAGCTGCGACAAGGCGTACTCGAGCAAAAGCAAGTTGAACGCTCACGTACGGCTGCACACGAAAACGAACGTGCACAAGTGCAAGATGTGCGAGAAGATCTTCGCGTATCCTTCGTATCTGCGGGACCACTTGAAAAGCCACGAGCAGGTGTCCAGCGCAGGCGACGCGACCGCCGAACAGAGAAAGATATTCGAGTGCCCGACTTGCCGGAAAAGGTTTCGCATGCTGAAGAACCTGAGGGCCCACGAGAGATTGCACACCGGTAAGGGCCTGGTGCAGTGCGAGATATGCGACAAGAGGTTCAGCCAACGGTACAACTTGAAGATCCATCTGCGAACGCACAAGGCGGCGAGGGCCCACAAATGCGAGTACTGCGACAAGAGTTTCGTGCAGAAGGGTAATCTCGTCGAGCATCTGAGAATTCATACGAAGGTAAAGCCGTTCGAGTGTAAAACCTGCGGGAAACGGTTCTCGCAGTCCAGTCACTTGAAGAATCACCAGGCCTCGCACGCTTCTCTGAGGCAGCATCAGTGTCGGTTGTGCGGGAAACGGTTCAAACTGATCAACCACTTGAAAAGACACTTGACTCTGCACGACGGTGCCAAAACGTACAAATGCCATCGTTGCAATCAGATGTTTTCGCAAGCGTTTAGCTTGACGAGACATTTGAAGAGGCACGAATCGCACGAGTCGCACGCGTAG
Protein Sequence: MFIVTKEIDSENIGKLCRTCLREDGDKMICLFVGPAGSSLAAKLRSLSCLDVWQGDGLPEKMCDRCVTRAESALLYREQCRAADRALRQAAVKVSGLAAYTTVPGCKLYQQNQSFQPVPIPVQVQNTHKTLKCIECGILCATYQELCAHGRSHLPLMQENMPAQRVRVAESQNPYLNFNFSHFSSNLSGETLPNPPLSPFIRSNMIPQMIPMNAENSSRAACALHCSLCNHTFTNRMQLMSHNIAHSTENIDMSCDNENIDICENSNQIPQNLSYGRSIDSVENSVENSIQNLSYGKSGTNAAGQPHSVGFPDNMDLEEIHGSNGSSERLENTPMHHPGDDILDTRALRFDKELERADNKENIGGYEMCPGDLNYASKEHVEQDNSVSAEAKRYKCEACSKLFSQRSKLVTHRLSHSGQQPFKCQSCDKAYSSKSKLNAHVRLHTKTNVHKCKMCEKIFAYPSYLRDHLKSHEQVSSAGDATAEQRKIFECPTCRKRFRMLKNLRAHERLHTGKGLVQCEICDKRFSQRYNLKIHLRTHKAARAHKCEYCDKSFVQKGNLVEHLRIHTKVKPFECKTCGKRFSQSSHLKNHQASHASLRQHQCRLCGKRFKLINHLKRHLTLHDGAKTYKCHRCNQMFSQAFSLTRHLKRHESHESHA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00762709;
90% Identity: iTF_00762709;
80% Identity: -