Basic Information

Insect: Halictus quadricinctus
Gene Symbol: -
Assembly: GCA_028454245.1
Location: CM052118.1:10288953-10291100[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.1 8.3 7.2 0.7 2 23 126 147 125 147 0.93

2 11 0.01 0.84 10.3 3.2 2 23 219 240 218 240 0.90

3 11 2.6e-05 0.0021 18.5 2.2 1 23 388 410 388 410 0.98

4 11 2.4e-06 0.00019 21.8 1.2 1 23 416 438 416 438 0.98

5 11 3.2e-06 0.00026 21.4 1.9 1 23 444 466 444 466 0.98

6 11 0.00011 0.0089 16.5 1.4 1 23 483 505 483 505 0.98

7 11 1.6e-08 1.3e-06 28.6 1.1 2 23 512 533 511 533 0.98

8 11 1e-07 8.2e-06 26.1 1.2 1 23 539 561 539 561 0.98

9 11 4.5e-07 3.7e-05 24.0 3.2 1 23 567 589 567 589 0.96

10 11 0.0011 0.087 13.4 5.5 1 23 595 617 595 617 0.96

11 11 8.9e-05 0.0072 16.8 5.3 1 23 623 645 623 645 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.1	8.3	7.2	0.7	2	23	126	147	125	147	0.93
2	11	0.01	0.84	10.3	3.2	2	23	219	240	218	240	0.90
3	11	2.6e-05	0.0021	18.5	2.2	1	23	388	410	388	410	0.98
4	11	2.4e-06	0.00019	21.8	1.2	1	23	416	438	416	438	0.98
5	11	3.2e-06	0.00026	21.4	1.9	1	23	444	466	444	466	0.98
6	11	0.00011	0.0089	16.5	1.4	1	23	483	505	483	505	0.98
7	11	1.6e-08	1.3e-06	28.6	1.1	2	23	512	533	511	533	0.98
8	11	1e-07	8.2e-06	26.1	1.2	1	23	539	561	539	561	0.98
9	11	4.5e-07	3.7e-05	24.0	3.2	1	23	567	589	567	589	0.96
10	11	0.0011	0.087	13.4	5.5	1	23	595	617	595	617	0.96
11	11	8.9e-05	0.0072	16.8	5.3	1	23	623	645	623	645	0.99

Sequence Information

Coding Sequence: ATGTTTATCGTGACGAAAGAGATCGACAGCGAGAACATCGGTAAATTATGCCGGACGTGTTTAAGAGAGGATGGCGACAAAATGATCTGTTTGTTCGTGGGACCGGCTGGCTCGTCTCTCGCTGCAAAGTTGCGATCACTGTCGTGTTTGGACGTGTGGCAGGGCGACGGCCTCCCGGAAAAGATGTGCGATCGCTGCGTGACCAGAGCAGAGTCCGCCTTGCTCTACAGGGAACAGTGTCGAGCCGCTGACAGAGCGTTGAGACAGGCTGCTGTAAAGGTGTCCGGATTAGCTGCGTACGCTACAGTTCCTGGATGCAAACTATACCAACAGAACCAAAGCTTCCAGCCAGTTCAAGATACACACAAAACGTTGAAATGCATCGAATGCGGTGTCCCTTGCGCGACTTATCAAGAATTGTGCGCTCACGGTAGATCGCATTTGCCGTTGATGCAAGAGAATATGCCAGCGCAACGTGCGCGCGTAGTAGAATCTCAGAATCCCTATCTGAACTTCAATTTTAGCCACTTCAGTTCGAATCTGAGCGGAGAGACGGTATCGAACCCGCCGCTGTCCCCCTTGATCAGATCGAACATGATTCCACAGATGATCCCGATGAACGCCGAGAACTCTAGTCGGGCCGCTTGCGCGTTGCACTGTTCTCTGTGCAACCACACGTTCACCAACCGGATGCAGCTGATGAGCCACAATATCGCTCACAGCACGGAAAACATAGACATGTCTTGCGACAACGAGAACATAGACATCTGCGAAAATTCGAATCAAATTCCCCAGAACTTGAGCTACGGAAGGTCCATCGACTCCGTCGAGAATTCCGTCGAGAATTCCATTCAGAACTTATCGTACGGTAAATCTGGGACGAACGGGACCGGGCAAGCGCACAGCGTCGGCTTTCCCGAAAACATGGATCTGGAAGAAATTCACGGGTCGAACGGGAGTTCCGAGCGACTCGAAAATACACCGATGCACCATCAAGGGGACGACATGCTCGACACCCGTGCGTTGAGGTTTGGCAAACAGCTCGAGCGTACCGACAACAAGGAAAATATCGGTGGCTACGAGATGTGCCCCACCAATTTGAATTACGCGTCGAAGGAACACGTCGAACAAGATAATTCGGCTAGCGCGGAGACAAAGAGATACAAATGCGAGGAGTGTTCGAAACTGTTTTCCCAGCGATCAAAACTACTGACCCACCGGCTGTCGCACTCCGGCCAACAGCCCTTCAAGTGCCAGAGCTGCGACAAGGCTTACTCGAGCAAAAGCAAATTGAACGCTCATGTCCGGCTGCACACCAAAACGAACGTGCACAAGTGCAAGATATGCGAGAAAATCTTCGCGTATCCTTCGTACCTGCGGGACCACTTGAAAAGCCACGAGGAGGTGTCGGGCGCAGGCGACGCGACGGTCGACCAAACAAAAATATTCGAATGCGCGACTTGCCGGAAAAGATTTCGGATGCTGAAAAACCTGAGGGCCCACGAGAGATTGCACACCGGCAAGGGCCTGGTGCAGTGCGAGATATGCGACAAGAGGTTCAGTCAACGGTACAACTTGAAGATCCATCTGCGAACGCACAGGTCGGCGAGATCCCACAGATGCGAATACTGCGACAAAAGTTTCGTGCAGAAGGGTAATCTCGTCGAGCATTTGAGAATTCATACGAAAGTGAAACCCTTCGAGTGTAAAACGTGCGGGAAACGGTTCTCGCAGTCGAGTCACTTAAAAAACCACGAGGCCTCGCACGCTTCTCTGAGGCAGCATCAGTGTCGGTTGTGCGGGAAACGGTTCAAACTGATCAACCACTTGAAAAGGCACTTGACTCTGCACAACGGCGCCAAAACGTACAAGTGCCATCGTTGCAATCAGCTGTTTTCCCAAGCGTTCAGCTTGACAAGACACTTAAAGAGGCACGAGTCGCACGAGTCGCACTCGTAG
Protein Sequence: MFIVTKEIDSENIGKLCRTCLREDGDKMICLFVGPAGSSLAAKLRSLSCLDVWQGDGLPEKMCDRCVTRAESALLYREQCRAADRALRQAAVKVSGLAAYATVPGCKLYQQNQSFQPVQDTHKTLKCIECGVPCATYQELCAHGRSHLPLMQENMPAQRARVVESQNPYLNFNFSHFSSNLSGETVSNPPLSPLIRSNMIPQMIPMNAENSSRAACALHCSLCNHTFTNRMQLMSHNIAHSTENIDMSCDNENIDICENSNQIPQNLSYGRSIDSVENSVENSIQNLSYGKSGTNGTGQAHSVGFPENMDLEEIHGSNGSSERLENTPMHHQGDDMLDTRALRFGKQLERTDNKENIGGYEMCPTNLNYASKEHVEQDNSASAETKRYKCEECSKLFSQRSKLLTHRLSHSGQQPFKCQSCDKAYSSKSKLNAHVRLHTKTNVHKCKICEKIFAYPSYLRDHLKSHEEVSGAGDATVDQTKIFECATCRKRFRMLKNLRAHERLHTGKGLVQCEICDKRFSQRYNLKIHLRTHRSARSHRCEYCDKSFVQKGNLVEHLRIHTKVKPFECKTCGKRFSQSSHLKNHEASHASLRQHQCRLCGKRFKLINHLKRHLTLHNGAKTYKCHRCNQLFSQAFSLTRHLKRHESHESHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00966155; iTF_00183428; iTF_00184086; iTF_01071147; iTF_00024763; iTF_00862046; iTF_00861348;
90% Identity: iTF_00862046; iTF_00861348;
80% Identity: -