Lcal023194.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lasioglossum calceatum
Gene Symbol
-
Assembly
GCA_963966675.1
Location
OZ016554.1:9709569-9718395[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.0024 0.26 12.4 2.7 1 23 167 189 167 189 0.98
2 20 2.7e-05 0.0029 18.6 0.9 3 23 199 220 198 220 0.96
3 20 6.9e-05 0.0075 17.3 3.6 1 23 226 248 226 248 0.98
4 20 0.078 8.5 7.6 0.4 1 23 252 274 252 274 0.97
5 20 3e-06 0.00033 21.5 0.9 2 23 281 302 281 302 0.98
6 20 0.0003 0.033 15.3 0.3 1 23 308 330 308 330 0.98
7 20 0.11 12 7.2 0.5 1 23 336 358 336 358 0.97
8 20 1e-06 0.00011 23.0 0.1 2 23 365 386 364 386 0.97
9 20 8.4e-07 9.2e-05 23.3 0.6 1 23 392 414 392 414 0.98
10 20 1.6e-06 0.00018 22.4 1.4 3 23 422 442 420 442 0.98
11 20 0.016 1.8 9.8 0.6 1 23 513 535 513 535 0.97
12 20 2.9e-06 0.00031 21.6 1.2 1 23 541 563 541 563 0.98
13 20 3.4e-07 3.7e-05 24.5 0.4 1 23 569 591 569 591 0.98
14 20 0.00077 0.084 14.0 1.0 2 23 598 620 598 620 0.96
15 20 1.5e-05 0.0017 19.3 3.8 1 23 625 647 625 647 0.97
16 20 0.0021 0.23 12.6 3.0 1 23 656 678 656 678 0.96
17 20 6.3e-06 0.00069 20.5 2.2 1 23 684 706 684 706 0.97
18 20 1.2e-05 0.0013 19.7 0.1 2 23 713 734 712 734 0.96
19 20 2.7e-06 0.0003 21.7 3.5 1 23 740 762 740 762 0.98
20 20 7.7e-07 8.4e-05 23.4 0.9 1 23 768 790 768 790 0.98

Sequence Information

Coding Sequence
ATGTGGAAATGTCAGGCTATGGATAGGTGCGAGGAGGTCAAGATCGAGTACACGAAAATAATCGAACCGATTAGCACGTTCGAGGGTATGGAATTGATCAATTATCAGACCGAGGAGGTCTGTGTCGAAGAGTACGAGGAGATTAGTCACCAGGAAATAATCACGGAGACGTTAGAGTTCATTGAAGAAACGCAGATGGACGCGGAATCCGAACCTGAACCCGAACCTGAACCTGAACCCGAACCGGAACTTGAACCAGAACCCGAACCAGAACTTGAACTAGAAGGAGAACTTGAATTAGAAGGGGAACTCAAATCAGGAACAGACTATCAATCCGAAGTAGACCTGGAATCCGAAGCGGAGCTACATCTGGAACTAGAAGCTGGATCAGAACCAGATGTAGACATGAAATTAGAGTCGGAGTCAGAATCAGAGTCGGCGGTACTGATTAAGAAGTTTCACCACGATCGGGACCCGAACAGGAAGTGTTCGGTGATCTACGAGTGCGACATCTGCAAGAAGAGGATACGCAAGAAGACGCTCTTCCTGAGGCACAGGCAAAACCACGAGAGGAACGGTGATGAGATCGGGCACTGCGACGAGTGTGACAAGTCGTTCGCCGACGACGACAAGCTGAAGAAGCACATAATCAAGGTGCATCAGAAGGAGAAGCCGTACCAGTGCGTGCTTTGCAGCAAGCGCTTCAAGACCAAGGAGTTTCTGAAGACGCACCTGAAGCAACACAACAAGCGGTTCACGTGCGACGTATGCGGAATATCGAAGGTGTCTGGCTACGACCTGCGGCTGCATAAGAAGAAGCACAACGAGGACTACGTGGCCCGCTGCGAGATGTGCGGCAAGGGCTTCTACACGAAGCAGACCCTGGAGAGACACTTGCTCACGCACACCGGCGAGAAGCCGTTCGTCTGCAGAATCTGCAAGACCGCTTACGCGAGCTCCGCCTATCTCGGCACGCACATGAAGTCGCACGGCGAACGGGAGAAGTTCAAGTGCTCGATGTGCAACTTCGAGAGCTACTGGAAGGGCGCGTTGAAAGTGCACCTCAAGATACACAGCGGCGAGAACCTGATCAGCTGCGAGGTCTGCGGGAAATCAGTTTCCAGCAAGGCCTACCTGCAGGTTCACATGCGCATACACACAGGCGAGAAACCGCACGTGTGCGAGGTATGCGGGAAAGCCTTCAGCGTCAGGAAGTACTTGATAGTGCACCTCAGAACGCACACGGGAGAAAGACCCTACGGGTGCAAGGTATGCCAGAAGAGATTCACGCAACAGGGATCTCTGAACTCGCACATGAAGTCCCATATCGAAAGGAAATCTACAGAACCGGCAAGAGGACGAAGAAGTAGTccgaccatcgaaaagttggtTTTGACCACGATCAAGAACGAGAATATCCCCGCGAGATCCGTCGAGCTTTCGTCACCGAGCTCGGAGGTGTTGGAGAGGCTCGATCAAGAAAcggaggacgcggagaagagctCTTCGTCGCCGGATCAGTCCTCGCAGACATGTTATCAGTGCAGAGTATGCGCGAAGCTTTTCAGGACGAAGAACCTCTACGAGGGTCACTTGGTTTCGCACAGCGACGCGCGTCCTTTCCGATGCGACATCTGCGAGAAGACCTTCAAGAGGACGAACACCTTGGCTGTCCATCGAAGGATCCACACTCGGGAGCGGAACTTCGTCTGCGACGTTTGCGGCCACGCGTTTGTGCAGGCCTCGCAGCTGACCATTCATCAGAGAAGACATTTCGACAAGTACACCAGGTACTGCGAAGTCTGCAAGAAGGGGTTCTTCACGAACGCCGAGCTGCACGGCCACATGAATGTGAAGCACGGCGCCAAGGAGCACGTCTGTCGCTACTGCAACAAGTCGTTCCCGAACAACCACACACTGGTGAAGCACTTGATGGTCCACGACCCGAACTTCAAGCCCGTGAAGCACCAGTGCGAGTTCTGCGGCAAGACATTCGTCTACAAGAACTCGCTGGTGTTCCACGTGAAGTCCCACATGGGCGAGAACAGACACGAGTGCCATCTGTGCGGCAAGTCGGTGTCCTCGAAGGGGTCCCTTCAGGATCACCTGAGGCTCCACAGCGGCGAGAAACAGCTGATCTGCGACGTCTGCGGCAAGGCGTTCATCAAGAGGAGCACGCTGGTCGTTCACAAGAGGATTCACACGGGGGAGAAGCCGTACACCTGCGACACCTGCGGGAAATCGTTCACGCAGCACTCCACGCTGGTCATCCACAAACGTTATCACACGGGACAGAGACCCTACCAGTGCGCCTATTGCAATAAGTCGTTTGTTTCGAGGTCGTCCTTGAACGCGCACAACAAGGTGCACGCGGTGAACCCCGATCAATCGGACTGA
Protein Sequence
MWKCQAMDRCEEVKIEYTKIIEPISTFEGMELINYQTEEVCVEEYEEISHQEIITETLEFIEETQMDAESEPEPEPEPEPEPELEPEPEPELELEGELELEGELKSGTDYQSEVDLESEAELHLELEAGSEPDVDMKLESESESESAVLIKKFHHDRDPNRKCSVIYECDICKKRIRKKTLFLRHRQNHERNGDEIGHCDECDKSFADDDKLKKHIIKVHQKEKPYQCVLCSKRFKTKEFLKTHLKQHNKRFTCDVCGISKVSGYDLRLHKKKHNEDYVARCEMCGKGFYTKQTLERHLLTHTGEKPFVCRICKTAYASSAYLGTHMKSHGEREKFKCSMCNFESYWKGALKVHLKIHSGENLISCEVCGKSVSSKAYLQVHMRIHTGEKPHVCEVCGKAFSVRKYLIVHLRTHTGERPYGCKVCQKRFTQQGSLNSHMKSHIERKSTEPARGRRSSPTIEKLVLTTIKNENIPARSVELSSPSSEVLERLDQETEDAEKSSSSPDQSSQTCYQCRVCAKLFRTKNLYEGHLVSHSDARPFRCDICEKTFKRTNTLAVHRRIHTRERNFVCDVCGHAFVQASQLTIHQRRHFDKYTRYCEVCKKGFFTNAELHGHMNVKHGAKEHVCRYCNKSFPNNHTLVKHLMVHDPNFKPVKHQCEFCGKTFVYKNSLVFHVKSHMGENRHECHLCGKSVSSKGSLQDHLRLHSGEKQLICDVCGKAFIKRSTLVVHKRIHTGEKPYTCDTCGKSFTQHSTLVIHKRYHTGQRPYQCAYCNKSFVSRSSLNAHNKVHAVNPDQSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00860557;
90% Identity
-
80% Identity
-