Lalb002751.1
Basic Information
- Insect
- Lasioglossum albipes
- Gene Symbol
- -
- Assembly
- GCA_000346575.1
- Location
- KB641145.1:277529-289184[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.6e-05 0.0021 18.6 0.9 3 23 201 222 200 222 0.96 2 19 6.8e-05 0.0054 17.3 3.6 1 23 228 250 228 250 0.98 3 19 0.077 6.2 7.6 0.4 1 23 254 276 254 276 0.97 4 19 2.9e-06 0.00024 21.5 0.9 2 23 283 304 283 304 0.98 5 19 0.00029 0.024 15.2 0.3 1 23 310 332 310 332 0.98 6 19 0.11 8.8 7.2 0.5 1 23 338 360 338 360 0.97 7 19 1e-06 8e-05 23.0 0.1 2 23 367 388 366 388 0.97 8 19 8.3e-07 6.6e-05 23.3 0.6 1 23 394 416 394 416 0.98 9 19 1.6e-06 0.00013 22.4 1.4 3 23 424 444 422 444 0.98 10 19 0.016 1.3 9.8 0.6 1 23 515 537 515 537 0.97 11 19 2.8e-06 0.00023 21.6 1.2 1 23 543 565 543 565 0.98 12 19 3.4e-07 2.7e-05 24.5 0.4 1 23 571 593 571 593 0.98 13 19 0.00076 0.061 14.0 1.0 2 23 600 622 600 622 0.96 14 19 1.5e-05 0.0012 19.3 3.8 1 23 627 649 627 649 0.97 15 19 0.0021 0.17 12.6 3.0 1 23 658 680 658 680 0.96 16 19 6.2e-06 0.0005 20.5 2.2 1 23 686 708 686 708 0.97 17 19 1.2e-05 0.00094 19.7 0.1 2 23 715 736 714 736 0.96 18 19 2.7e-06 0.00021 21.7 3.5 1 23 742 764 742 764 0.98 19 19 7.6e-07 6.1e-05 23.4 0.9 1 23 770 792 770 792 0.98
Sequence Information
- Coding Sequence
- ATGGACGACCTAGGAGTGCAAAAGTCAAAGAACCAAACATGGAGTAGGCTCCATGGAGATCATATCAATTTCTTAAAATTCTGCATGGCGCTCAAGGTTTCCCTATTTCATCAAGGTTTCCCTATTTCATCAAGGTGCGAGGAGGTCAAGATCGAGTACACGAAAATAATCGAACCGATTAGCACGTTCGAGGGTATGGAATTGATCAATTATCAGACCGAGGAGGTCTGTGTCGAAGAGTACGAGGAGATTAGTCACCAGGAAATAATCACGGAGACGTTAGAGTTCATTGAAGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAGACATGAAATTAGAGTCGGAGCCAGAATCAGAGTCGGCGAACCACGAGAGGAACGGTGATGAGATCGGGCACTGCGACGAGTGTGACAAGTCGTTCGCCGACGACGACAAGCTGAAGAAGCACATAATCAAGGTGCATCAGAAGGAGAAGCCGTACCAGTGCGTGCTTTGCAGCAAGCGCTTCAAGACCAAGGAGTTTCTGAAGACGCACCTGAAGCAACACAACAAGCGGTTCACGTGCGACGTATGCGGAATATCGAAGGTGTCTGGCTACGACCTGCGGCTGCATAAGAAGAAGCACAACGAGGACTACGTGGCCCGCTGCGAGATGTGCGGCAAGGGCTTCTACACGAAGCAGACCCTGGAGAGACACTTGCTCACGCACACCGGCGAGAAGCCGTTCGTCTGCAGAATCTGCAAGACCGCTTACGCGAGCTCCGCCTATCTCGGCACGCACATGAAGTCGCACGGCGAACGGGAGAAGTTCAAGTGCTCGATGTGCAACTTCGAGAGCTACTGGAAGGGCGCGTTGAAAGTGCACCTCAAGATACACAGCGGCGAGAACCTGATCAGCTGCGAGGTCTGCGGGAAATCAGTTTCCAGCAAGGCCTACCTGCAGGTTCACATGCGCATACACACAGGCGAGAAACCGCACGTGTGCGAGGTATGCGGAAAAGCATTCAGCGTCAGGAAGTACTTGATAGTGCACCTCAGAACGCACACGGGAGAAAGACCCTACGGGTGCAAGGTATGTCAGAAGAGATTCACGCAACAGGGATCTCTGAACTCGCACATGAAGTCCCATATCGAAAGGAAATCTACAGAACCGGCAAGAGGACGAAGAAGTAGTTCGACCATCGAAAAGTTGGTTTTGACAACGATCAAGAACGAGAATATCCCCGCGAGATCCGTCGAGCTTTCGTCACCGAGCTCGGAGGTGTTGGAGAGGCTCGATCAAGAAACGGAGGACGCGGAGAAGAGCTCTTCGTCGCCGGATCAGTCCTCGCAGACATGTTATCAGTGCAGAGTATGCGCGAAGCTTTTCAGGACGAAGAACCTCTACGAGGGTCACTTGGTTTCGCACAGCGACGCGCGTCCTTTCCGATGCGACATCTGCGAGAAGACCTTCAAGAGGACGAACACCTTGGCTGTCCATCGAAGGATCCACACTCGGGAGCGGAACTTCGTCTGCGACGTTTGCGGCCACGCGTTCGTGCAGGCCTCGCAGCTGACCATCCATCAGAGAAGACATTTCGACAAGTACACCAGGTACTGCGAAGTCTGCAAGAAGGGGTTCTTCACGAACGCCGAGCTGCACGGCCACATGAATGTGAAGCACGGCGCCAAGGAGCACGTCTGTCGCTACTGCAACAAGTCGTTCCCGAACAACCACACACTGGTGAAGCACTTGATGGTCCACGACCCGAACTTCAAGCCCGTGAAGCACCAGTGCGAGTTCTGCGGCAAGACATTCGTCTACAAGAACTCGCTGGTGTTCCACGTGAAGTCCCACATGGGCGAGAACAGACACGAGTGCCATCTGTGCGGCAAGTCGGTGTCCTCGAAGGGGTCCCTTCAGGATCACCTGAGGCTCCACAGCGGCGAGAAACAGCTGATCTGCGACGTCTGCGGCAAGGCGTTCATCAAGAGGAGCACGCTGGTCGTTCACAAGAGGATTCACACGGGGGAGAAGCCGTACACCTGCGACACCTGCGGGAAATCGTTCACGCAGCACTCCACGCTGGTCATCCACAAACGTTATCACACGGGACAGAGACCCTACCAGTGCGCCTATTGCAATAAGTCGTTTGTTTCGAGGTCGTCCTTGAACGCGCACAACAAGGTGCACGCGGTGAACCCCGATCAATCGGACTGA
- Protein Sequence
- MDDLGVQKSKNQTWSRLHGDHINFLKFCMALKVSLFHQGFPISSRCEEVKIEYTKIIEPISTFEGMELINYQTEEVCVEEYEEISHQEIITETLEFIEETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDMKLESEPESESANHERNGDEIGHCDECDKSFADDDKLKKHIIKVHQKEKPYQCVLCSKRFKTKEFLKTHLKQHNKRFTCDVCGISKVSGYDLRLHKKKHNEDYVARCEMCGKGFYTKQTLERHLLTHTGEKPFVCRICKTAYASSAYLGTHMKSHGEREKFKCSMCNFESYWKGALKVHLKIHSGENLISCEVCGKSVSSKAYLQVHMRIHTGEKPHVCEVCGKAFSVRKYLIVHLRTHTGERPYGCKVCQKRFTQQGSLNSHMKSHIERKSTEPARGRRSSSTIEKLVLTTIKNENIPARSVELSSPSSEVLERLDQETEDAEKSSSSPDQSSQTCYQCRVCAKLFRTKNLYEGHLVSHSDARPFRCDICEKTFKRTNTLAVHRRIHTRERNFVCDVCGHAFVQASQLTIHQRRHFDKYTRYCEVCKKGFFTNAELHGHMNVKHGAKEHVCRYCNKSFPNNHTLVKHLMVHDPNFKPVKHQCEFCGKTFVYKNSLVFHVKSHMGENRHECHLCGKSVSSKGSLQDHLRLHSGEKQLICDVCGKAFIKRSTLVVHKRIHTGEKPYTCDTCGKSFTQHSTLVIHKRYHTGQRPYQCAYCNKSFVSRSSLNAHNKVHAVNPDQSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00861333;
- 90% Identity
- -
- 80% Identity
- -