Lcal008368.1
Basic Information
- Insect
- Lasioglossum calceatum
- Gene Symbol
- retn
- Assembly
- GCA_963966675.1
- Location
- OZ016540.1:12953454-12968739[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.4e-19 7.3e-16 58.9 0.0 18 89 110 179 99 179 0.93
Sequence Information
- Coding Sequence
- ATGCTCGTAAAGCGGACGTTTACGCACACGCAGCAGAACCGCGAGATAGCCCCGCGCGTTGTTGTTGCGTCCGCTACTCCTGTTAACACCCCGTTAACGCGAATCCCGAACGGCCTCGTAAAATTCGACGACGCCGTGCCGAGCTACATATGTCCGGTCGCCACGCCGATGAAATCCGAAGGAGTTATTGGAATCGGTTGCCGGACACCCCCGCAACACGTTTCTCCTCCCGATCGTAAAGCCGAGATTTCCTGTCATCCCTTGACCTTCGCGCAACCCTTTATGGTCCTCGTTATTCGGGACTTTCTGGGCGTGAACTTTCTGCGGACACCGATCAATCGGCTGCCGATCATGGCGAAATCGGTACTGGATCTGTACGAGCTGTACAACCTGGTGATCGCTCGAGGCGGGCTGGTCGACGTAATTAACAAGAAGCTCTGGCAGGAAATCATCAAAGGTCTCCACCTGCCATCGAGCATCACTTCCGCCGCGTTCACTCTGCGCACTCAGTACATGAAATACCTGTATCCGTACGAGTGCGAGAAAAGACGACTGTCAACTCCGGCAGAATTACAAGCAGCCATCGATGGAAATCGACGAGAAGGGCGGCGTAGCAGTTACGGTGCCTACGGGGGCGGCGGAGGCAGTGCTGACAGCATGGTGCAGAGGAACCCGCATACACCAAATGCTCTGGCGTTGCACACGCAAATGTCGCCGCTCTCGTTAGTTACAGCAGTAGCTGCCGGTGGACAACACCATGGACCACAATCGTTGGTGAACGGAAGCGCAGCGCACACACCTCTGCCACATCATCCTCACCATCCTCAGCTCCCTCAGGGATCGCTGGGACAGCCGCCGAATGCCGGACCTATTCCGGGAATGGCACCGTCCGAGTTTGAAGCACGCATGGTAGAGTATGTGAAGCTGCTGAACAAGGAGCTGAGAAGTGCGGGCGCTGGTACACCACCCCCCATGATCCACCGACAAGGTAGCGCGTCACCTCAACCATCGACACCACCACGAGACGGAGCTTTCAGCGCTCTGGAAATGTCCCGGCTCACATTGTGGAACATGTATAATAACAACACCCTCTATCCTGGAGTTGGACATCAACCACCCATGTCGCCACAGCCGTCACACTCGCCGTTACCTGCGGCGTCTAGCCCTGAACCTCAGAGGGAAGCCCTCAACCTTGGACTCAGGTCGTCGCCCGTATCCTCATCTCCTGCAAGACAGAGTTCACCTTCTTCAGGCGGCAGTTTACAACTTAAAAGAGACCCTGACATAATCAGCACACCTGGACCACCACCTGCGAAAAGGTTGCTCTCGGACGACGACAGTCCTGTTGAAAAAAGCGCACCCTCTGTCCTAGGAACGCACATTAAAATTTCCAATCGAGGGGACGAAAGGAGCGGCGATAATTCTCTGGTGGTCAGTATGGAGCTGAACGGAGTGATGTACCAAGGAGTATTGTTTGCCCAGACTGACAGCAAGACCACGACCAGCACTGCGAGCAACAATACGGCGAAAGCGTCGCGGAGCATGGTCTCGTGA
- Protein Sequence
- MLVKRTFTHTQQNREIAPRVVVASATPVNTPLTRIPNGLVKFDDAVPSYICPVATPMKSEGVIGIGCRTPPQHVSPPDRKAEISCHPLTFAQPFMVLVIRDFLGVNFLRTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPAELQAAIDGNRREGRRSSYGAYGGGGGSADSMVQRNPHTPNALALHTQMSPLSLVTAVAAGGQHHGPQSLVNGSAAHTPLPHHPHHPQLPQGSLGQPPNAGPIPGMAPSEFEARMVEYVKLLNKELRSAGAGTPPPMIHRQGSASPQPSTPPRDGAFSALEMSRLTLWNMYNNNTLYPGVGHQPPMSPQPSHSPLPAASSPEPQREALNLGLRSSPVSSSPARQSSPSSGGSLQLKRDPDIISTPGPPPAKRLLSDDDSPVEKSAPSVLGTHIKISNRGDERSGDNSLVVSMELNGVMYQGVLFAQTDSKTTTSTASNNTAKASRSMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00763028; iTF_00863067;
- 90% Identity
- iTF_00762343;
- 80% Identity
- -