Lalb002763.1
Basic Information
- Insect
- Lasioglossum albipes
- Gene Symbol
- -
- Assembly
- GCA_000346575.1
- Location
- KB641145.1:230872-233906[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.00061 6.1 7.2 0.2 25 43 92 110 72 115 0.70 2 6 0.00041 4.1 7.8 0.1 22 46 117 141 111 144 0.89 3 6 0.00061 6.1 7.2 0.2 25 43 270 288 250 293 0.70 4 6 0.00041 4.1 7.8 0.1 22 46 295 319 289 322 0.89 5 6 0.038 3.8e+02 1.5 0.0 27 47 415 435 408 439 0.87 6 6 0.19 1.9e+03 -0.8 0.0 22 34 492 504 489 520 0.71
Sequence Information
- Coding Sequence
- ATGTTCATGATGAAAGAGCCAGGACCGCCCGGCGAAGGGTCGAACGCTTCAACGGCGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTCCTCTGAAAAGGGCAAGGACAGCGGGGACCAGTTGGAGGACCTGGACGACACGCCGTTGGACTTCAGGAAAAAGCAGGAGGAGGAGAAGAGGAAGAAGAAGACGTCGTCGTCGTTGTCGTCCATCGAGGAGCCGCCGAAGAAGAAGCACACCTGCGAGATCTGCTACGCGTCGTTCGACCGGAAGAGCAAGCACACCAGGCACATGTACAAGCACAGCAACTCTCGGCCGCACAAGTGCGCGATCTGTTCGAAAGGCTTCAAGACCAGCGCCCACCTGGCCAGGCACATGGAGATCCATGACGAGCCGGTCACCTGGCACACGTACAATGCGATAGACCCACTCGCTCCGACTTTTCTGATAGTAAAACTCGAAGAAAATTACTTTCGGATACCGACCTCGTTGAGCATGTTCATGATGAAAGAGCCAGGACCGCCCGGCGAAGGGTCGAACGCTTCAACGGCGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTCCTCTGAAAAGGGCAAGGACAGCGGGGACCAGTTGGAGGACCTGGACGACACGCCGTTGGACTTCAGGAAAAAGCAGGAGGAGGAGAAGAGGAAGAAGAAGACGTCGTCGTCGTTGTCGTCCATCGAGGAGCCGCCGAAGAAGAAGCACACCTGCGAGATCTGCTACGCGTCGTTCGACCGGAAGAGCAAGCACACCAGGCACATGTACAAGCACAGCAACTCTCGGCCGCACAAGTGCGCGATCTGTTCGAAAGGCTTCAAGACCAGCGCCCACCTGGCCAGGCACATGGAGATCCATGACGAGCCGGTCACCTGGCACACGTGCAGCCTCTGCGACTTCAAGGCGCGCACCAAGCCGTACCTGAAGATCCACTACATCCGCAAGCACACGGAGGACTACAACTACAAGTGCGAGCAGTGCGGCAAGATGTTCAAGGTGCAGTCGGACTACACGACCCACGTAAAGGACCACGACACAGAGTCCTGCGTCTGCGACATCTGCGGCTCCTCGTACCCCAGCAAGAGCTCCCTGTACTTCCACAAGTATTACAAGCACAAAACGAAGGTGAAGAAGTTCCAGTGTCAGACTTGCAAGAAGAAGTTCAAGACCCAGAAGAATCTGGATAGCCATATGGAGCTGCACAAGATCAAGTACGTGTGCGAGCAATGCGGCATGGAGTTCAAGACCAAGTACGGCTTGACCAAACACCTCAGAACTCATTCCGGGGAGAAGTCCTACCTTTGCGCGATCTGCGGGAAAACGTTCGGCTGTCTCAGCTCCCAGAAGATTCATCTGTTGACCCATGTCGGCGAAAGACCTTACGTCTGCGACATCTGCGGGCAAAGTTTCACGCAGAGGTCGCCGATGATGCTGCACCGGAGGAAGCATCCCGGCGTGCACCCGGCCCCTCCGCCCATTAAGATCACCAATCTGCTTCACGGAGTGCAAGACAAGATCATTGTGAATAAGAGCAGCAAGTAA
- Protein Sequence
- MFMMKEPGPPGEGSNASTAKXXXXXXXXXXXXXXXXXXXXXESSEKGKDSGDQLEDLDDTPLDFRKKQEEEKRKKKTSSSLSSIEEPPKKKHTCEICYASFDRKSKHTRHMYKHSNSRPHKCAICSKGFKTSAHLARHMEIHDEPVTWHTYNAIDPLAPTFLIVKLEENYFRIPTSLSMFMMKEPGPPGEGSNASTAKXXXXXXXXXXXXXXXXXXXXXESSEKGKDSGDQLEDLDDTPLDFRKKQEEEKRKKKTSSSLSSIEEPPKKKHTCEICYASFDRKSKHTRHMYKHSNSRPHKCAICSKGFKTSAHLARHMEIHDEPVTWHTCSLCDFKARTKPYLKIHYIRKHTEDYNYKCEQCGKMFKVQSDYTTHVKDHDTESCVCDICGSSYPSKSSLYFHKYYKHKTKVKKFQCQTCKKKFKTQKNLDSHMELHKIKYVCEQCGMEFKTKYGLTKHLRTHSGEKSYLCAICGKTFGCLSSQKIHLLTHVGERPYVCDICGQSFTQRSPMMLHRRKHPGVHPAPPPIKITNLLHGVQDKIIVNKSSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00860594;
- 90% Identity
- iTF_00860594;
- 80% Identity
- iTF_00860594;