Basic Information

Insect: Lapara coniferarum
Gene Symbol: -
Assembly: GCA_949316025.1
Location: OX438921.1:36209236-36217779[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 5.6 4.7e+02 2.4 0.0 3 23 117 137 115 137 0.94

2 19 0.068 5.8 8.5 0.4 2 23 141 163 140 163 0.94

3 19 0.079 6.7 8.3 0.4 3 23 400 421 398 421 0.96

4 19 0.16 14 7.3 1.0 1 21 429 449 429 450 0.94

5 19 0.077 6.5 8.3 0.1 2 23 460 481 459 481 0.92

6 19 5.4 4.5e+02 2.5 0.7 1 23 497 520 497 520 0.84

7 19 0.084 7.1 8.2 0.5 1 22 529 550 529 552 0.89

8 19 5 4.3e+02 2.6 0.3 8 23 603 619 600 619 0.89

9 19 0.013 1.1 10.7 0.2 3 23 631 652 630 652 0.93

10 19 0.23 20 6.8 0.3 1 23 657 680 657 680 0.95

11 19 3.1e-05 0.0026 19.0 1.8 1 23 686 708 686 708 0.97

12 19 4e-05 0.0033 18.6 1.8 1 23 715 737 715 737 0.98

13 19 0.00011 0.009 17.3 2.3 1 23 742 764 742 764 0.96

14 19 0.0011 0.092 14.1 1.9 1 23 770 792 770 792 0.98

15 19 9.7e-06 0.00082 20.6 1.1 3 23 800 820 798 820 0.97

16 19 0.0001 0.0085 17.4 2.3 2 23 827 848 827 848 0.98

17 19 0.0011 0.089 14.2 0.7 2 23 856 878 855 878 0.97

18 19 0.0003 0.025 15.9 0.6 1 23 883 905 883 905 0.98

19 19 0.00095 0.08 14.3 0.9 1 23 911 934 911 934 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	5.6	4.7e+02	2.4	0.0	3	23	117	137	115	137	0.94
2	19	0.068	5.8	8.5	0.4	2	23	141	163	140	163	0.94
3	19	0.079	6.7	8.3	0.4	3	23	400	421	398	421	0.96
4	19	0.16	14	7.3	1.0	1	21	429	449	429	450	0.94
5	19	0.077	6.5	8.3	0.1	2	23	460	481	459	481	0.92
6	19	5.4	4.5e+02	2.5	0.7	1	23	497	520	497	520	0.84
7	19	0.084	7.1	8.2	0.5	1	22	529	550	529	552	0.89
8	19	5	4.3e+02	2.6	0.3	8	23	603	619	600	619	0.89
9	19	0.013	1.1	10.7	0.2	3	23	631	652	630	652	0.93
10	19	0.23	20	6.8	0.3	1	23	657	680	657	680	0.95
11	19	3.1e-05	0.0026	19.0	1.8	1	23	686	708	686	708	0.97
12	19	4e-05	0.0033	18.6	1.8	1	23	715	737	715	737	0.98
13	19	0.00011	0.009	17.3	2.3	1	23	742	764	742	764	0.96
14	19	0.0011	0.092	14.1	1.9	1	23	770	792	770	792	0.98
15	19	9.7e-06	0.00082	20.6	1.1	3	23	800	820	798	820	0.97
16	19	0.0001	0.0085	17.4	2.3	2	23	827	848	827	848	0.98
17	19	0.0011	0.089	14.2	0.7	2	23	856	878	855	878	0.97
18	19	0.0003	0.025	15.9	0.6	1	23	883	905	883	905	0.98
19	19	0.00095	0.08	14.3	0.9	1	23	911	934	911	934	0.98

Sequence Information

Coding Sequence: ATGACTTCAGACGAATCAGACGATGAACCGCTAGCCGTCTTGGCagccaataaaaaattaaatccggAGAAATTCGCGGGAATAGTGTTACCTAAAGATATTGTTATAGAGCCCaagagaaagaaaaagaagaaattaGTATCCCCAAAAGGTTTATCGGTAACAATAAAATTCCAGAGTCGACTTAAAAATGTCGCACCGCCTATTGTGGAGAGGCCTGCGGACGTTTGGTTGTATTTAAAAGATCTTAACCCAAATGGACCCTACAGTTGTTTGCTTTGCTCAGACTGGTTCGTTAACAGATccaaaataataattcattatgTTCTAAATCACAAAAAAGATTTCTGCGGGATATGCCGATATTTTGTACCAGACAGAGAAGCTTGGTGGGAACATGTAAAGTTCCACACTCCGTGGCCGTGCTCTCAGTGTGTAGAAAACTTTCACACTGAAAACGCATTACGTCAGCATCTGAGTAGTGCTCATAATCTAGTCCATTGTCGTCTCTGCCATTTCCGAGTATCTGATGATGATCAGTATAACACACATCTCTTCCAAAAGCATAATGTCACTAACGTTAGCACAAAAGACGATGAAGTACTTTGGGAATTGGAATTTGAGGGATGTACGAAGTTCCAATGCTTCTTGTGCTCTAAAACAAATAACTTGACTCGAATGTTCTTTAATCATTACATGGGCTATCATCATTTTACTTTGAAATGCTTCACCAGGATTATATCTGGAAAAGACTCCCCATTCTTAGTCTGTGGAGCTGATGTTAGTGCTGAGTTTGTGGAAAACCAGTTGAAGACAACATCGAGATGTGGCTACCTCGATATTGAGAACAAATCTGAGGGTAAAGATGTGGGTCAAGCCATCAAAGACGAATCAGCAATAATTTCAGAAGTTAAAGAGGAAATTATCACACCTGAACCTTTCCGCGAATTGAAATGTGAAGTTGATATTATGAAATGTGAGGAAAATGAAATGGAAAATGAGAATGAAACTGAAGATGACATATCCAAAACCTACAAAGGCGATGAAGATTTCGATGTGACGCTCATGGAGATAGTGATGATACAGAAATGCTactttgattatgttaagttgttAACAAATGACATAAACATGAATGTGGTGCCTAAAGTTTCCAACATTGGTTACGAAAAACCTGCCTCAGAGAAGGCAACGGACTGTCCTCTGTGTAAAATGACGTCAGAAACTCCTCAAGAGTACTCATCTCATATGTCTAAAACGCACAGTGTGAAATGCCTGCCAATATATTCTTGTAGAGTCTGTACTTCTTCTTTCGATACACAAAATGAGTTGGACTCTCATACTAACCACGAACTAGGTAATTTCGAGGATCTCTGGATATGCCAGTTCTGTGATAAAGAGTTTGATGACCGAGAAGGAGCTAGGATACATTTGACTGATCATTGGGAGTTGATACAAATGGACAACTGCTTCAGCCCCCATTTAGGCTTTAAATGTCGGTATTGCCCCACACTCTTCTGGAACGAGACTGATCGGGAAACGCATCAAGTGAAAGttcattttaataaacataaGGAAGAgttttataaatgtgaaagctGTAGTGAAATCTTCAGCGATAAGatATGGTACATTTACCACTACTTCGCTGAACACAATACAACTAAGGAGTCATTTCCGATGTACCTGTACAAGTGCACCCTCTGTTGCCTGGTGCTAATGGACATACACGAAATGCGCAATCATTTCGATGGCAACCACCCTGAGGCAAGGAAGGTGTTCTGCTCCCTCCATCCATGCAAGTACAAACCGCTTAGCCAGAGGAAgtcatttaagatacatttgaAGACCATCCACAAGCCGTCAGCGCGTCAGGACGGCGCTGCGAGTTGTCTCATCTGCAGTCGCGAGTTCCGAAGCTCGCGGGCCCTGAGTGGTCACATGGCGCAGGTGCACGGGCCTGGCAAGTTCAAATGCAAGATATGCAGGGCGGCGTTGAACACTGCCGATGAAAGGAAACTCCACTACCTGATCCGCCACCCCGGGCAACACCCGTTCGAGTGCAACGAGTGCGGCAAGTCGTTCCAGTACAAGTCCTCGCTGTACATGCACAAGCAGGAGCACTTGCCGAACAAGCAGAGTTACACCTGCAACTTCTGCAAGAAAGTGTTTGCGAAAAAAGACTCATTCCGCGAGCACCTGCTGATCCACGAGGGTCCGCGGCACGCGTGCTCGTACTGCCCCATGCGGTTCGTGCAGCGCTCCAACATGCTGCGGCACGAGCGGCGGCACACCGGCGAGCGGCCGTACGCCTGCCCGCACTGTGAACGCACCTTTGCGGATAAGGGCGCTTGCACATCGCACGCTAGGACTCATTCTAGAACACAATCTTACGGATGCATGTACTGTGGACAAACTTTTGTGCAGAAATCAAAACTTACTTATCATATCAGAAAACATACTGGAGAAAATTTGGAGACTTGTACAGTTTGTTCTAAAATATTTACCAGCGCTTGTTCATTACGGGAACACATGAAAATACATACACTCAATAAACAGTCTGTGAAATGTCCATTATGTGACCGCAAGTACCAAGATGAGCGGTACATGCTGCGGCACCTGCGCACATCGCACACTCAAGGTCACTTCACTTGCCCGCTGTGCCGCAAATCCTTGACCAGTGCAGTCGGACTGAGACACCACGTGATTACTCACAGCCCGCTGAAGACTTATAAGTGTCAAATTTGTCCTAAAGGCTACTCAGCAAGGAAATCTATAGTCAAGCATCTACGTAGACGACACGGACTGAAAGGCAATGAGATCAACATACGTGATTTCTATAATAGATTGGACCCTAGAGAGTGTCAGTTAGGCCTTGACGAAGAACTAATGACCAACATATTCGGACCTCCAAAGAAAGTGTTAAGTCAAATTCTATACCGTAACTTTGTGAACTTAAATACAGGTCTCGATCTAACTAAAAAGCCTGAAGAAACGCCTGTAGAAGAAAAACTTCCTGAAAAGGAACCACCTGAAGAGATTTCAGAAGATACAAGCGAAAGTACTGTTGAACCTACAAAAACAGTTAAACCAATAAAGCAAGAAGTAGATGATAGTGAAGGCAATGAAGAATTAGAACCCACGGACTTTGTCAGTGTAaaaattgaaccaatggatgaTGAGAGTTCGgagtatattatttaa
Protein Sequence: MTSDESDDEPLAVLAANKKLNPEKFAGIVLPKDIVIEPKRKKKKKLVSPKGLSVTIKFQSRLKNVAPPIVERPADVWLYLKDLNPNGPYSCLLCSDWFVNRSKIIIHYVLNHKKDFCGICRYFVPDREAWWEHVKFHTPWPCSQCVENFHTENALRQHLSSAHNLVHCRLCHFRVSDDDQYNTHLFQKHNVTNVSTKDDEVLWELEFEGCTKFQCFLCSKTNNLTRMFFNHYMGYHHFTLKCFTRIISGKDSPFLVCGADVSAEFVENQLKTTSRCGYLDIENKSEGKDVGQAIKDESAIISEVKEEIITPEPFRELKCEVDIMKCEENEMENENETEDDISKTYKGDEDFDVTLMEIVMIQKCYFDYVKLLTNDINMNVVPKVSNIGYEKPASEKATDCPLCKMTSETPQEYSSHMSKTHSVKCLPIYSCRVCTSSFDTQNELDSHTNHELGNFEDLWICQFCDKEFDDREGARIHLTDHWELIQMDNCFSPHLGFKCRYCPTLFWNETDRETHQVKVHFNKHKEEFYKCESCSEIFSDKIWYIYHYFAEHNTTKESFPMYLYKCTLCCLVLMDIHEMRNHFDGNHPEARKVFCSLHPCKYKPLSQRKSFKIHLKTIHKPSARQDGAASCLICSREFRSSRALSGHMAQVHGPGKFKCKICRAALNTADERKLHYLIRHPGQHPFECNECGKSFQYKSSLYMHKQEHLPNKQSYTCNFCKKVFAKKDSFREHLLIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPHCERTFADKGACTSHARTHSRTQSYGCMYCGQTFVQKSKLTYHIRKHTGENLETCTVCSKIFTSACSLREHMKIHTLNKQSVKCPLCDRKYQDERYMLRHLRTSHTQGHFTCPLCRKSLTSAVGLRHHVITHSPLKTYKCQICPKGYSARKSIVKHLRRRHGLKGNEINIRDFYNRLDPRECQLGLDEELMTNIFGPPKKVLSQILYRNFVNLNTGLDLTKKPEETPVEEKLPEKEPPEEISEDTSESTVEPTKTVKPIKQEVDDSEGNEELEPTDFVSVKIEPMDDESSEYII

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01359103;
90% Identity: iTF_01359103;
80% Identity: -