Basic Information

Insect: Lapara coniferarum
Gene Symbol: -
Assembly: GCA_949316025.1
Location: OX438922.1:13661413-13668400[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00046 0.039 15.3 1.4 1 23 226 249 226 249 0.96

2 12 0.031 2.6 9.5 2.2 3 23 258 278 256 278 0.94

3 12 1.8e-05 0.0015 19.7 4.2 2 23 285 306 284 306 0.97

4 12 6.6e-06 0.00056 21.1 0.2 1 23 312 334 312 334 0.98

5 12 0.0013 0.11 13.9 2.0 1 23 343 365 343 365 0.98

6 12 0.00043 0.036 15.4 0.1 6 23 375 392 370 392 0.92

7 12 0.0076 0.64 11.5 11.6 1 23 398 420 398 420 0.97

8 12 4.2e-08 3.5e-06 28.0 2.4 1 23 426 448 426 448 0.99

9 12 8.6e-07 7.2e-05 23.9 2.1 1 23 454 476 454 476 0.98

10 12 0.0002 0.016 16.5 0.4 1 23 482 503 482 503 0.97

11 12 0.0013 0.11 13.9 1.8 1 23 509 531 509 531 0.96

12 12 3.9e-06 0.00033 21.8 1.4 1 23 537 559 537 559 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00046	0.039	15.3	1.4	1	23	226	249	226	249	0.96
2	12	0.031	2.6	9.5	2.2	3	23	258	278	256	278	0.94
3	12	1.8e-05	0.0015	19.7	4.2	2	23	285	306	284	306	0.97
4	12	6.6e-06	0.00056	21.1	0.2	1	23	312	334	312	334	0.98
5	12	0.0013	0.11	13.9	2.0	1	23	343	365	343	365	0.98
6	12	0.00043	0.036	15.4	0.1	6	23	375	392	370	392	0.92
7	12	0.0076	0.64	11.5	11.6	1	23	398	420	398	420	0.97
8	12	4.2e-08	3.5e-06	28.0	2.4	1	23	426	448	426	448	0.99
9	12	8.6e-07	7.2e-05	23.9	2.1	1	23	454	476	454	476	0.98
10	12	0.0002	0.016	16.5	0.4	1	23	482	503	482	503	0.97
11	12	0.0013	0.11	13.9	1.8	1	23	509	531	509	531	0.96
12	12	3.9e-06	0.00033	21.8	1.4	1	23	537	559	537	559	0.98

Sequence Information

Coding Sequence: ATGGATaataacaatatacacgtaGTAAAACCGGAAAAATCCGAAGGAAGCAATGGTGCCaatgaagaatatttcgaaATTAAGATCCCTTTAAACTTATTCCAATACCTAAGTGCAGAGGGTTGTGATCTGCAGAACTTGTGTCGCGTCTGTTTGTCCCTTGATAATGACGTGATGTTTCCAATGTGCAGTGAAGACAATAGTTTATTATCCAATATGTTTTCTAATTTCACAACTTTACCGGCCTATTTTGGTGATGGTCTGCCATCAAACATCTGCAACTCATGTCATGGTCAAGTTGTTAACTGCTATGAATTCAAGGCTCTGTGTGAACGATCTAATTATATGTTAAAGTCTATATTAAAAGGTGAATTTACTGCCAAAGATGAAATACTTGGTAATGATGACTATTTACAGAATTCACAAGAAACAAAGAAAGTAAAGGAAGCAGAGCAGCAAAATTTTAGAATAGAAGAAGAAAAtcaagATACTCCGTATTTAGAAGACTTTGGTGAAGTATCTAATGAGAATGTGACACGACAATGTATTTCAGGGAACACAAATGCAGATGTAAAgggCCCAACAACATTTTCCGCTACAGatccaAAAAGTCTGCTGGATGAAGTTTATTCATTAAACATTGGAAATAATAAGAAAAGTAAAAGTACATATCGTTATTCATGTTCATTTTGTGGTAAGAATTACATAAAGTTGAAAACACTAAGGGCGCATGTGAAGAACACGCACAAAGAATCTGAACAACCATATGGATGTAACCAGTGCAAGGAATCATTTCATTCCGAACACGATCTCAAGCTGCATGCAGCCTTACATCCAACGGGATCTGTGTGGAAATGTAATAAATGCGAGAAGGAATTTCATTCAAAATCGATGCTACGTCGTCACATACAACGGCATATGGAGTCGAAGCGGTACGCGTGCGAGACGTGCGGCAAGCTGTTCATAGAACTGTACGCGCTGCGGCGACACATGCGCGTGCACACCGGCGAACTCGTCGAGAAGAAATACAAGTGCCATCTCTGCGACAAAAAGTACCGGTGGAGCGCGCAGTTGTCGGCGCACGTGTCGCGTCACGCGGGCGCGCGGCCGTGCGCATGCGCATGCGGCAAGGCCTTCCCCACGCCGCGCCTGCTCGCCAGCCACCAGCGCGTGCACGACGACCTCAAGCCGCACGCCTGCCACTACTGCGACAAGAGGTTCCGGCATGAGTCGACGCGGAACACACACCACCGCACGCACACAGGCGAGAAGCCGTACGTGTGCTGCACCTGCGGGAAGGCTTTCATACAAAAGTCAAACCTCACGCTGCACATGCGGACACACACCGGCGAGAAGCCGTACTCGTGCTCGAAGTGTTGGCGCAAGTTCTCGTCGAGTTCTACGTTGAAGGCGCATCTGCGCAGCCACACCGGCGAGCGGCCTTATGAGTGCAAAATTTGTGGAAAAAAGTTCGCGCGCGTGCCGCTGCAGACGCACATGCGGCTCCACACAGGCGAGCGGCCGCACCGCTGCAGCGCCTGCCCCAAGACCTTCGTCAACGCCTCGCGTCTGCGCGAACACGCACACGTCCATACCGGTGAAAAACCATTCGAATGTGCAATATGCGCTCAAAAGTTTCCTACAAAGTCCCATCTGGTTAAACACCTGAGGACCCACCAACCGCAGAAGAAATCCAAAAGAGTAGTGGTGCACAAACCTGAAATATTAGTTTCTAATAAAATCGTCATATCCGAAAATACAACGACTATTGAAGGGTTGAAATCAGAGACTGTCAGAGCGGAGGAGATTGCATGCAGAATAGTGATATTAGATTCAGAACAAGCACCATTGGAGGTGCACTTGCCatgctaa
Protein Sequence: MDNNNIHVVKPEKSEGSNGANEEYFEIKIPLNLFQYLSAEGCDLQNLCRVCLSLDNDVMFPMCSEDNSLLSNMFSNFTTLPAYFGDGLPSNICNSCHGQVVNCYEFKALCERSNYMLKSILKGEFTAKDEILGNDDYLQNSQETKKVKEAEQQNFRIEEENQDTPYLEDFGEVSNENVTRQCISGNTNADVKGPTTFSATDPKSLLDEVYSLNIGNNKKSKSTYRYSCSFCGKNYIKLKTLRAHVKNTHKESEQPYGCNQCKESFHSEHDLKLHAALHPTGSVWKCNKCEKEFHSKSMLRRHIQRHMESKRYACETCGKLFIELYALRRHMRVHTGELVEKKYKCHLCDKKYRWSAQLSAHVSRHAGARPCACACGKAFPTPRLLASHQRVHDDLKPHACHYCDKRFRHESTRNTHHRTHTGEKPYVCCTCGKAFIQKSNLTLHMRTHTGEKPYSCSKCWRKFSSSSTLKAHLRSHTGERPYECKICGKKFARVPLQTHMRLHTGERPHRCSACPKTFVNASRLREHAHVHTGEKPFECAICAQKFPTKSHLVKHLRTHQPQKKSKRVVVHKPEILVSNKIVISENTTTIEGLKSETVRAEEIACRIVILDSEQAPLEVHLPC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01359074;
90% Identity: iTF_01359074;
80% Identity: -