Lcon025418.1
Basic Information
- Insect
- Lapara coniferarum
- Gene Symbol
- RFX7
- Assembly
- GCA_949316025.1
- Location
- OX438931.1:12161895-12180711[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.1e-34 8.6e-30 104.1 0.0 3 78 150 225 148 226 0.98
Sequence Information
- Coding Sequence
- ATGGACAGCACAAGTCCATTTAAGCCGTGGGCGTCTGACGATAGTGCAAAAAACGTTAAATCTGAAAGAGAATTAGTGGATGACGCGAAACTTCATCGGGAAAATGTCAATCATCCAAAACATAGGCAAACTGCGTCTTACGATAAAGAAAGTGTCGCTGTTCCTAGCAACGCTCCGGGATCTTCGGGTGCTACTAGCGCCAGTACGGAGCCCAGCAAGGGCAAAGAGTCTAAAATGGACTCAAGCAAAGTAGCTTCCATGCAGCAAATCGTCGAAAGCACCCTCAGTCAAGAGGGTCGGCAAAGAGTTGCACAGCTGCTGGAGGCAGTGGAAGCTTTGAGTGGTGCTGAGAGATTACTACTGTACCTGCGTCTGCCTACCGGCCTACCTCCACATGATCCCTTAAAACAACCCATCAATCCATTAGGCTCTAGGGCTGAACTTCAGCAAACTGTAACATGGATACAGACACATTTAGAAGTTGACCCAGATGTCTCATTGCCCAAACAGGATGTATATGATGAATATATTGCGCATTGCATGAGCAGCAACATGAAACCACTTTCCACTGCTGACTTTGGCAAAGTGATGAAGCAAGTATATCCAAGCGTCCGCCCGCGACGACTCGGCACGCGCGGTAATTCCAGGTACTGCTATGCAGGTCTTCGGAAAAAGATCAAGTTAGAAGTACCACAGTTACCTGATTTAGGAGAATCAGCAAAGGAACCAACTACTTCTTCACGAGAAACGGAAAGAATCATTTGCGACTGGGCAGAAACTAAACTAGGTGTGAAGTTCGCGAACATATCGGAGCTGTCGCGGCACCTGATGTCGCCGCTGGCGCCGCCCGGGCCGCACAGCGCCTCGCCGCCGCCGCACGCAACGCCAGACGACGCTACCAGTCGAACACTAATAAAGCACTTGAAACGCAAAATGCagGCTCACGGAACACCCGGGCGTCCGAAGAAGAACAAAAGCCTAGAAACGGCAGGTGAATCTCCACCTTCCACATCTTACGTGGGCCTCCACCAACCGCTCAAACACGAAAGCGAAATCGTAGGCGAGCCCAGCTACGGGTACCAGCACGCGTACGTGCCCCCGTACGAGGTGCGGCCTCCCTTCCCGTACGCGGCGCCCCCGCGGGCCCACCCGCCGCACGCCCCGCACCCGCCACACCCCCCCGCCAGCATGCACGACTACCGCTCCGACTCCTACGTGTTCGAACCGCCTTACGCGCCGAAAGACCTTAGTCTGCCTCCTGACGCGGCTCACAATTTGCCCATCAACTTGAGCAGTGACGCTTCTCTAGACCTCTCCACGGAGCGCACCGAGTGGCAAAGACGAAGACCTCCCGAACCACCCCCGACGCGTTTAGCTCTCCCAGGTAAGAAACAAATATTAGAGACATACCAGAGCGAGACCCAGGCGAGTTCACCGCGCCCGCTACAGCCGGACCCTCGCGTGGTGCCTCAACCCACTGAAGAGTTTCCGCGCGCGGAGTACCTCCCTAAGAAAATGAGAGCGGCCGAGATCCTCGGCGGAAAGCTGGCAGCCGCGCGGCAGACTTTCACTAGCACGGACGCAGCTTCGAGCTCGGTGCCGGTCGCGGAACCCCCTGTTCGTTCCGAGGGTGCTTTTTTAGAGGATCCAAAAAACTCCACGAGCCGGTCCACAAGCACCGCCGCGGCGCTGGCCCGGGAGGAACAGGAGGCGGCGAGTCCCACGCGATCGGCGAAGGCTCTGACGTCTGAGTCCGAACGCACCAAACTACGAAAAAGTAGCCGAACGAAGGGACCCTCGCCGGATCGGGTGGGCTCGCCCGAGCGACCCACAACACCCGGTTCGTGTTGCGGTCTGGACGGGATCAACATTAAAACTGGAATGATTTGTGGAGAGAAACATTCGGAAATTTTAAACAGGGAGCGTGTCATCAGCATTTGCAATATAGATAAACACGCCTTAGACGATTATTTGAACGAAGGAAACAGCCAGGAGCACGAGGAAGAATTGCTACAATACTTTCACTCGAGGACAACACATGCGGAGGCACCTGCAGTTCCCACCACGACAGACAGTGCGGCTGCTTTTTTAGAAGCATGCACGGAGCCACAAGAGGAACTTAGTCAAGGTAAAAACGAAAAGATATCACAATTGCGCGAATTGTTAGCTAAGAATCTTAAAAACCAAAGTGGGactaattcacaaataatccaGGATAACCAAATATCACAGGAAAGTTTGCATGTTCAAACTGTCAAGGCGGTTGTTTCTGAAGGCGCTTTTAAACCTGTTGTGGCTACTGAAAACGAAATGAATGGTTCCACTTTGAGAAATGATAATAGTACATCAAAACATTGTAATGCTATACCAAATGAAAACGGCACATCTTTGCCGTTTACCAATGATTCAACAACACCTagtcaaattattacaaatgttGGTGGCTCGCATCTTTACAACGGCCATTACAACAACGACCCTCAGAGCCCCACCACTAGAACCCAGCAATATGACTTTGTGCCTATTTCTGACGGGTGCCATTCACCTCGAAATTTTCATTCAAAATCGCCATTGGGATTTAACCAAAGGGGGCAAAGTCCTtcgaaaattaataaacaagttGCAATGGGCGGTTCACTGCAGACTTCGCCAATTTCGCACAGCACGGCTGCTAGTCCATTTGTAAGTCCCAGAAATACTCCAGTCCCACGATCGCGGCTCTGCCCTCGACCCATACCTAAACATAATGGTAGAAAACGACGCAATCTATTGTCGCTGGGAATGAATGACTCGTGCTCTAAGCAATTTGCAATACCGAACGATCAAAAGTTTATGCCTAAAGGCCCCGTTTGTGATCCGGGTAAATATTGCCAACCGATGTCCGCCCCGCCATCGCCCAACATAACTACatcacaatttaaaaatcacGTTTATCCATGTAATTCGGGTATTCCAAACGGCAACAATAACCTGAATCTAAACTTCTTACCAAATACCCTATTTCGAGATCACATAAACGGTGACCAGCCATTATCTGCCGATCCGTTATCAAGTGAAGTAAGTAAATTTTTCCAAGACCCACTTGTTACTTACAGACCTACACAAGACGCTTTTAGATCGCAGTCCGTGCCGCTCAAACAGGGCTTGAATAATATAGGGTTAATGAGTTATAACAACACACCGGTGGGATCAGTCCCGCCGACCCCCGTGCCCAACGAGTTCTGCGACTTTGGTTCCCTTGCTGACCCTTGCGACATAACAAATGCTGGCCTTAATCGGGAAACGTTAGACAAAATTTACAATGCAATAGATAGTAGCAACGATGTACTTAATAGCGATGCGACGCAAACTCTTCTAAATACCAATGATACATTAAGTAACGAGTGCGACCCACTTCCGGGACAGCAGATTATACCTGATCACCTGACATCATTGATCCCCAGTAGTGACGATTTGTTGGATAGAAATAACCATTTTAATCAAACTTTTGTCAACGATGGCACCGGACCGGACAATGTTGAAGATTTCCTCAAGAGACCCAACAGTATCGAGTTCGATTTATCGGGTATGATAACCGatagaaataaatactataCGTCTCGTTCTGTGCCGAGCACTCCGTTGCCGTCTAAACGTACTGCTCCAAACCTCCAAATCGATTCACGTCGTTCGAGAGAATTGTTTACGGCAGAAAGTTACCCCACAGTAACTAACGGAATTACTTCCAAGTCCGTTCCCTCAACTCCGCAGTTCGCTGAGGACAGAAGTGTTTTCAGTTACAGCAACAGAGACTTTCTTATCAATGGTAATTCCGTGTGTGGTTCCTCTCAAGTTCACGAGAGCGTCGTGGACAATGACCAAGCGCTGACCTCGCCGCTCCACGACATTCTGCGAGAGGACATTCTGGCAGATCCACTGACGCCCGCTTTTATGGCTGATCTCGATAAAATGGAATCATTCTGA
- Protein Sequence
- MDSTSPFKPWASDDSAKNVKSERELVDDAKLHRENVNHPKHRQTASYDKESVAVPSNAPGSSGATSASTEPSKGKESKMDSSKVASMQQIVESTLSQEGRQRVAQLLEAVEALSGAERLLLYLRLPTGLPPHDPLKQPINPLGSRAELQQTVTWIQTHLEVDPDVSLPKQDVYDEYIAHCMSSNMKPLSTADFGKVMKQVYPSVRPRRLGTRGNSRYCYAGLRKKIKLEVPQLPDLGESAKEPTTSSRETERIICDWAETKLGVKFANISELSRHLMSPLAPPGPHSASPPPHATPDDATSRTLIKHLKRKMQAHGTPGRPKKNKSLETAGESPPSTSYVGLHQPLKHESEIVGEPSYGYQHAYVPPYEVRPPFPYAAPPRAHPPHAPHPPHPPASMHDYRSDSYVFEPPYAPKDLSLPPDAAHNLPINLSSDASLDLSTERTEWQRRRPPEPPPTRLALPGKKQILETYQSETQASSPRPLQPDPRVVPQPTEEFPRAEYLPKKMRAAEILGGKLAAARQTFTSTDAASSSVPVAEPPVRSEGAFLEDPKNSTSRSTSTAAALAREEQEAASPTRSAKALTSESERTKLRKSSRTKGPSPDRVGSPERPTTPGSCCGLDGINIKTGMICGEKHSEILNRERVISICNIDKHALDDYLNEGNSQEHEEELLQYFHSRTTHAEAPAVPTTTDSAAAFLEACTEPQEELSQGKNEKISQLRELLAKNLKNQSGTNSQIIQDNQISQESLHVQTVKAVVSEGAFKPVVATENEMNGSTLRNDNSTSKHCNAIPNENGTSLPFTNDSTTPSQIITNVGGSHLYNGHYNNDPQSPTTRTQQYDFVPISDGCHSPRNFHSKSPLGFNQRGQSPSKINKQVAMGGSLQTSPISHSTAASPFVSPRNTPVPRSRLCPRPIPKHNGRKRRNLLSLGMNDSCSKQFAIPNDQKFMPKGPVCDPGKYCQPMSAPPSPNITTSQFKNHVYPCNSGIPNGNNNLNLNFLPNTLFRDHINGDQPLSADPLSSEVSKFFQDPLVTYRPTQDAFRSQSVPLKQGLNNIGLMSYNNTPVGSVPPTPVPNEFCDFGSLADPCDITNAGLNRETLDKIYNAIDSSNDVLNSDATQTLLNTNDTLSNECDPLPGQQIIPDHLTSLIPSSDDLLDRNNHFNQTFVNDGTGPDNVEDFLKRPNSIEFDLSGMITDRNKYYTSRSVPSTPLPSKRTAPNLQIDSRRSRELFTAESYPTVTNGITSKSVPSTPQFAEDRSVFSYSNRDFLINGNSVCGSSQVHESVVDNDQALTSPLHDILREDILADPLTPAFMADLDKMESF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01358624; iTF_00290405; iTF_00787361; iTF_00341072; iTF_00063317; iTF_00819799; iTF_00428738; iTF_00818885; iTF_01429672; iTF_00427830; iTF_01010103; iTF_00858279;
- 90% Identity
- iTF_01358624;
- 80% Identity
- -