Basic Information

Insect: Laothoe populi
Gene Symbol: Znf296_1
Assembly: GCA_905220505.1
Location: HG992149.1:9304978-9321038[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.029 2.7 9.6 0.7 1 21 161 181 161 182 0.94

2 12 0.02 1.9 10.1 0.3 2 20 196 214 195 214 0.95

3 12 0.014 1.3 10.6 2.3 1 23 257 279 257 279 0.97

4 12 0.042 4 9.1 0.1 2 20 385 403 384 405 0.91

5 12 0.00028 0.026 15.9 1.8 1 23 413 436 413 436 0.97

6 12 9.8e-05 0.0093 17.3 1.5 1 23 458 480 458 480 0.98

7 12 1.3e-07 1.2e-05 26.4 2.4 1 23 487 509 487 509 0.99

8 12 1.4e-07 1.3e-05 26.3 2.3 3 23 523 543 521 543 0.96

9 12 3.2e-05 0.003 18.9 3.2 1 23 549 571 549 571 0.99

10 12 1.1e-06 0.0001 23.5 2.7 2 23 578 599 577 599 0.96

11 12 4.6e-08 4.4e-06 27.8 1.5 1 23 605 627 605 627 0.99

12 12 0.0039 0.37 12.3 0.1 1 23 633 655 633 655 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.029	2.7	9.6	0.7	1	21	161	181	161	182	0.94
2	12	0.02	1.9	10.1	0.3	2	20	196	214	195	214	0.95
3	12	0.014	1.3	10.6	2.3	1	23	257	279	257	279	0.97
4	12	0.042	4	9.1	0.1	2	20	385	403	384	405	0.91
5	12	0.00028	0.026	15.9	1.8	1	23	413	436	413	436	0.97
6	12	9.8e-05	0.0093	17.3	1.5	1	23	458	480	458	480	0.98
7	12	1.3e-07	1.2e-05	26.4	2.4	1	23	487	509	487	509	0.99
8	12	1.4e-07	1.3e-05	26.3	2.3	3	23	523	543	521	543	0.96
9	12	3.2e-05	0.003	18.9	3.2	1	23	549	571	549	571	0.99
10	12	1.1e-06	0.0001	23.5	2.7	2	23	578	599	577	599	0.96
11	12	4.6e-08	4.4e-06	27.8	1.5	1	23	605	627	605	627	0.99
12	12	0.0039	0.37	12.3	0.1	1	23	633	655	633	655	0.97

Sequence Information

Coding Sequence: ATGAGTTCTATCCATTATACACATGAAATAAAGATTGAAAAATTATGCCGAACATGTTTAGCGAAAGACAGTGAATTACATTCGTTATTTGATGTATATGTCGACACTGTTGCTCTTGATTTTATAGTTACCGCAGTTACTGGAATTAAGATTTGTAAAGGCGATGGTCTGCCGGCTACCATATGCTGTGAATGTAGAGAAAAGGCGGAGAAAGCCTATGATTTTAAGACAAAGTCACATGCAGCTGATATATCGTTGAAAGAAATTATCAAAAAAGATGAATGTGAACATACTTTACACAGCAGAATATCTTACAAGCCAATTACTACAAGTGTTAAAATTGAACATTTAACCTCAAATGACGCTGATGATTTCTCAGATAATGAATATCATGTACCAATTGACAATGCCCCTGATGACTTCACAGATTTAAGTTTAGaaccagttaaaaatgaaaaggTACCACAAGATAATTCTTATTTTGAATGTAAAAATTGTTTTCTTATATTTGAAAGTCGAGGCAAGTTGCAGGATCACAATAGAAAGAAGTGCATAAAAGttgaaATTGAAGATACTACTGGTACATATTGCCCACTTTGTGGAACTTGTTATGATGGAGCTGAGAGTCTTTCGAAACATTTATGGGAGTATCATGCTGAAGTCATGGGGCCCAAAAAGCGAGGAAGACCTAAAAAGATGTTAACAAGTacAATACTGGATAAGTTATCAGAAAATGGATTCTATATTACTACTGTCCCAGTGAAAAAATATGATTGTTCTTTTTGCACTGAACAGTGTTACACCAAAGAAGAATTAGAAAATCATGTGTTGAAGCATAAAGGTATGAAAGTATTATGTTGTATTAATTGtaagaaaatgtttttaaaacgtCAAAGTTTCGAAGAACACACTTGCTCTGAAGACAAAACTGATGAGAATAAACAAAATCAGGATGATGTATCGGATTTAcagactaataaaaataaaattatgaattatcTTACTGAGATGTCACTACAAGAACTTTTGGAGCCTAATTGTGATGTGGAGAATCTAAATATTCTGAAAGTGTGCAGCGCGTGCAGTGCTGTGTTTCTGTCAGAAGAGGACCTTGTTAATCACCACGATGCGGAACATCCTGAACTGTCGCTCCGATGTAATCTCTGCACTAAGgtaTTCGCAACTGTGAAATCAGCAGCACGACATAGAACGATTTGTAAACAAGTTGAGAGGAATCATAAATGCAGTACATGTGGTCTTAAATTTGCCTATGAGATATCACTTAATAAGCATATATTGAGATATCACCAGGGTCAGAGCGTCTCAATCACTTTCACAGATTCCATGACGAAACAGGAAGAAGATAAACAATATCAGTGTGATACTTGCAACAGATATTTCTTTAGAAAAGAACTACTCGCGAAGCATGCTAAAATCCATATGCcgaatcaaaaatattttcaatgtgATATATGTGAAAAGAAATTCACAAGAAAAGACAATTTGAGGTCACACAAACGCATTCATGATCCACACAGAGAAAAAGGACCGACGAACACTTGTCTATGTCTATACTGTGGTCGCAGTTTCTCGAATTCGTCCAATCTTATTGTACACATGCGTCGTCACACGGGCGAAAAACCCTACAAATGTGACTTTTGTGGCAaagGTTTCCCGAGATCATCTGATCTACAGTGTCACAGGAGATCACACACTGGCGAGAAGCCTTGTATTTGTCGTGTTTGTGGCAAagGTTTCTCGCGTAGCAACAAGCTGACGCGGCACATGCGCGTGCACACGGGCGTGCGCCCGTACAAGTGCACGTACTGCGACAAGGCATTCTCGCAGAGCAACGATCTCACGCTGCACATCCGCCGCCACACCGGCGACCGCCCCTACATATGCGAAGTATGCGGCGATAGGTTCATCCAGGGTACTGCTCTACAGAACCATAGACGTGCCCACGGCCATTTCCCAAGTGCTCCAGTGGAGGTAGACTCCCAGGTCCAAGCTCTACAATATTCAGTTCAGAATATAGCTCAGAATAGTCATTAA
Protein Sequence: MSSIHYTHEIKIEKLCRTCLAKDSELHSLFDVYVDTVALDFIVTAVTGIKICKGDGLPATICCECREKAEKAYDFKTKSHAADISLKEIIKKDECEHTLHSRISYKPITTSVKIEHLTSNDADDFSDNEYHVPIDNAPDDFTDLSLEPVKNEKVPQDNSYFECKNCFLIFESRGKLQDHNRKKCIKVEIEDTTGTYCPLCGTCYDGAESLSKHLWEYHAEVMGPKKRGRPKKMLTSTILDKLSENGFYITTVPVKKYDCSFCTEQCYTKEELENHVLKHKGMKVLCCINCKKMFLKRQSFEEHTCSEDKTDENKQNQDDVSDLQTNKNKIMNYLTEMSLQELLEPNCDVENLNILKVCSACSAVFLSEEDLVNHHDAEHPELSLRCNLCTKVFATVKSAARHRTICKQVERNHKCSTCGLKFAYEISLNKHILRYHQGQSVSITFTDSMTKQEEDKQYQCDTCNRYFFRKELLAKHAKIHMPNQKYFQCDICEKKFTRKDNLRSHKRIHDPHREKGPTNTCLCLYCGRSFSNSSNLIVHMRRHTGEKPYKCDFCGKGFPRSSDLQCHRRSHTGEKPCICRVCGKGFSRSNKLTRHMRVHTGVRPYKCTYCDKAFSQSNDLTLHIRRHTGDRPYICEVCGDRFIQGTALQNHRRAHGHFPSAPVEVDSQVQALQYSVQNIAQNSH*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00428364;
90% Identity: iTF_00063801;
80% Identity: -