Lpop013099.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Laothoe populi
Gene Symbol
-
Assembly
GCA_905220505.1
Location
HG992156.1:14380546-14403796[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 9.4e-05 0.0089 17.4 2.2 1 23 453 475 453 475 0.97
2 20 0.0049 0.46 12.0 0.6 1 20 481 500 481 503 0.94
3 20 9.3e-05 0.0088 17.4 4.4 1 23 522 544 522 544 0.97
4 20 0.00011 0.011 17.1 4.1 1 23 550 572 550 572 0.99
5 20 4.3e-05 0.0041 18.5 5.3 1 23 578 600 578 600 0.97
6 20 1.3e-05 0.0013 20.1 7.3 1 23 606 628 606 628 0.97
7 20 8.4e-07 7.9e-05 23.9 2.9 1 23 634 656 634 656 0.97
8 20 0.00012 0.011 17.1 6.7 1 23 662 684 662 684 0.97
9 20 0.00012 0.011 17.1 6.5 1 23 690 712 690 712 0.97
10 20 5.7e-07 5.4e-05 24.4 1.9 1 23 718 740 718 740 0.98
11 20 5.8e-05 0.0055 18.1 7.9 1 23 746 768 746 768 0.98
12 20 9.3e-06 0.00087 20.6 6.6 1 23 774 796 774 796 0.98
13 20 2.7e-05 0.0025 19.1 5.4 1 23 802 824 802 824 0.98
14 20 3e-05 0.0029 18.9 5.4 1 23 830 852 830 852 0.96
15 20 8.6e-06 0.00082 20.7 7.2 1 23 858 880 858 880 0.97
16 20 3.6e-06 0.00034 21.9 6.0 1 23 886 908 886 908 0.98
17 20 2e-05 0.0019 19.5 8.0 1 23 914 936 914 936 0.97
18 20 2.9e-06 0.00027 22.2 4.1 1 23 942 964 942 964 0.96
19 20 0.00064 0.06 14.8 0.3 1 23 971 993 971 993 0.96
20 20 0.29 27 6.4 5.6 1 23 1000 1022 1000 1022 0.99

Sequence Information

Coding Sequence
ATGAATCCGGAACACCATAATTTAAATACGGGTGGTGGCCAGCCTCCGGGAAGTGCAGAGTCTCAGAATCAAAGAGTGCAGTCCGCACAGCAACAACAGCAAAGTAATTTAACACCCACCACGTCTGCAACCGACCTGCGAGTGAACTCAGCTGCCGTGAACGTTGCTTTGTCTAGCGTTGCAAAATATTGGGTGTTTACAAATTTATTCCCCGGCCCGATCCCACAAGTTTCCGTCTACGGACTACCCACTGGAACTAGAATTGAAAATGGGAAACCAGTCCAGGACCTTGGACAAGCCCATGCAAGTATTCTCAATGGAGATCCAAACATATTACTGGGACATCATGGTGGGCAACCGCAAGTTACTGTTTCTGCATCAGGAGCTCAGCAGATTCCGGTGTCTCAGATAATTGCCACACAATCTGGACAATCGCATGAAGCGCTGGTGGGGCACAGCCAGCAGCAAGAGCTGGCAGCGCAGGCGGTGCAGGCGGCCGGCGCCCCCTCACACGCCTCGCACTCCTCACACTCCTCGCATTCCGCGCACCAGCAGGTACCCAATAACCGGGTCGAGTTTGTACAACACCATAACATTGATATGGGACACCACACACAGCAACACATGCTTCAGCAACAATTAATGGCTACTTCGCGACAGGACCATCCAAATCAACAGATACAGTTGACAGTCAGTGAAGATGGAATAGTGACTGTAGTGGAGCCAGGCGGTGGCAAATTGGTGGACAAAGAAGAATTACACGAAGCCATCAAGATACCCAGCGATCATGCACTTACTGTGCATCAACTACAACAGATAGTTGGCCAGCAGGTGATCGACAGCGTGGTGCGCATCGAGCAGGCGACAGGCGAGCCCGCCAACATCCTCGTCACCCACAACGCGGACGGCACCACCTCCATTGAGGCCAGCGCCGCGGACCACACCGACCACGCCAACCACACCACCCATACCCCCCACAACAACCACAACAACCACACCAACCACGCCGACCACGCGCCGCTCGTCAAGGACGAGAACAAACAGCCCAAGATCGACGCGCAGTTCGCCATACCCACAGAAATCAAGGACATCAAGGGCATCGATTTGAAGACTGTAGGAACAATGGGAATGGAGGGAGCTGTAGTCAAGATATCTGCCGGCGCCTCAGAACATGACATGCACGCCATGTACAAAGTCAATGTTGAAGACTTATCACAACTACTGGCGTATCATGAAGTGTTTGGAAAATTAAATGCAGAAGGACAACCGCAGCAACAGGCGAAGGTAATAAGTGAGGTTGAAGCGGAGGCAGGTACAAGTGCCGCTATGTCAGAACCCGAATCTTCACCCGGCCACCATTCTTGCGACATTTGCGGGAAGATATTCCAATTTCGATATCAACTGATCGTGCACAGACGATACCATGGCGAGAGCAAACCTTTCACGTGTCAAGTTTGCGGTTCGGCCTTTGCAAACCCCGTCGAGCTGTCGAGACACGGGAAATGTCATCTTGccGGTGATCCTACAGAGAGACACACAAAGAGATTGACACAAGATAAACCATATGCATGCACTGCTTGCCACAAAACTTTTTCGAGAAAAGAACACCTTGATAACCATGTCAGGAGTCACACAGGAGAGACTCCATACAGATGTGAGTTCTGCGCGAAGACGTTCACTCGGAAGGAGCACATGGTGAACCACGTGCGGAAGCACACGGGCGAGACCCCGCACCGCTGCGACATCTGCAAGAAGAGCTTCACCAGGAAAGAACACTTCATGAACCATGTCATGTGGCACACAGGTGAAACGCCGCACCATTGTCAAATATGCGGGAAGAAGTATACTAGGAAGGAGCATTTAGTGAATCATATGAGATCACACACAAATGATACACCATTCCGTTGTGAACTGTGCGGCAAGTCTTTTACAAGGAAGGAACACTTCACCAATCATATATTATGGCATACGGGTGAAACACCACACAGATGTGACTTTTGTTCGAAAACGTTTACACGTAAAGAACATCTACTAAACCATGTGAGACAACATACGGGCGAATCTCCCCATCGGTGTAATTTCTGTTCCAAATCTTTCACAAGGCGAGAACACCTCGTGAATCACGTGCGACAGCATACTGGAGAAACGCCTTTCCAATGTGGATACTGCCCAAAAGCTTTCACTAGGAAGGACCATCTCgTGAACCATGTCAGGCAGCACACTGGCGAGTCGCCGCACAAGTGTTCGTTCTGCACGAAGTCGTTTACACGCAAGGAGCACCTCACCAACCACGTGCGTCAGCACACGGGCGAGTCGCCGCACCGCTGCACCTACTGCGCCAAGTCCTTCACCAGGAAGGAGCACCTCACCAACCATATCAGACAGCATACGGGCGAAACACCACACAAGTGCACGTTCTGCCCGCGCGCCTTCTCGCGCAAGGAGCATCTCAACAACCACGTGCGGCAACACACCGGCGTCACGCCGCACGCCTGCACCTACTGCACCAAGACCTTCACGCGCAAGGAGCATCTCGTCAACCACGTCAGACAACACACGGGCGAGACTCCGTTCAAATGCACGTACTGCTCTAAATCATTCTCACGCAAAGAACACCTGACAAATCACATACACCTCCACACAGGAGAGACACCACACAAATGTCCCTTCTGTACTAAGACATTCTCGAGAAAGGAGCATCTCACCAACCATGttaggATTCACACGGGAGAATCACCGCATCGCTGTGAGTTTTGTCAGAAAACGTTCACTCGAAAGGAACATCTCACGAACCACATGAAACAGCACACAGGCGACACCGCACACGCGTGCAAGATATGCTCCAAACCTTTCACGAGGAAAGAGCATCTTGTTACACATATGAGATCGCATAGTTGTGGAGAGAGACCTTATAGTTGCGGTGAATGCGGCAAGTCGTTCCCGCTAAAAGGCAACCTACTGTTCCATGAACGGTCGCACAACAAAGGCGCTCGGCCATACCGATGCGACATCTGCTCCAAGAACTTCTTATGCAAAGGACATTTGGTATCTCACCGGCGCACGCACGCTGAAGCGGGCGAGAACCCTCCCAGCGGAGACGCGCCACCCGAGACTGAAGACTGCACCGACTGTAACAAATGCGTCAAGGTCGAAGTGGATACTCCTGAGAGGAAACACGAAATCAGAGCTGCAGTTGAAAATCGTCCAGCTGAAAGCACTGTACCCCAACCTCCACAAAACAACACAGCAGTTATGCAAATGAATAATCAAGTAAATCAGCAGGTCCGAGCAGTAACAGCGACCAGTTCGCAAGGCGTGACCACCGGCACGTTCACACACACTGCCAGCACGCAGCACCACGCGGGCGCTGCCATCGCCCATCATCCAGTCACCGTCAACTACTAG
Protein Sequence
MNPEHHNLNTGGGQPPGSAESQNQRVQSAQQQQQSNLTPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGTRIENGKPVQDLGQAHASILNGDPNILLGHHGGQPQVTVSASGAQQIPVSQIIATQSGQSHEALVGHSQQQELAAQAVQAAGAPSHASHSSHSSHSAHQQVPNNRVEFVQHHNIDMGHHTQQHMLQQQLMATSRQDHPNQQIQLTVSEDGIVTVVEPGGGKLVDKEELHEAIKIPSDHALTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTHNADGTTSIEASAADHTDHANHTTHTPHNNHNNHTNHADHAPLVKDENKQPKIDAQFAIPTEIKDIKGIDLKTVGTMGMEGAVVKISAGASEHDMHAMYKVNVEDLSQLLAYHEVFGKLNAEGQPQQQAKVISEVEAEAGTSAAMSEPESSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELSRHGKCHLAGDPTERHTKRLTQDKPYACTACHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHIRQHTGETPHKCTFCPRAFSRKEHLNNHVRQHTGVTPHACTYCTKTFTRKEHLVNHVRQHTGETPFKCTYCSKSFSRKEHLTNHIHLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHMKQHTGDTAHACKICSKPFTRKEHLVTHMRSHSCGERPYSCGECGKSFPLKGNLLFHERSHNKGARPYRCDICSKNFLCKGHLVSHRRTHAEAGENPPSGDAPPETEDCTDCNKCVKVEVDTPERKHEIRAAVENRPAESTVPQPPQNNTAVMQMNNQVNQQVRAVTATSSQGVTTGTFTHTASTQHHAGAAIAHHPVTVNY*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01030446;
90% Identity
iTF_00429225;
80% Identity
-