Lpop027995.1
Basic Information
- Insect
- Laothoe populi
- Gene Symbol
- sip1
- Assembly
- GCA_905220505.1
- Location
- HG992169.1:5000801-5007294[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.3e-15 2.8e-11 44.5 0.1 2 94 367 446 366 450 0.90
Sequence Information
- Coding Sequence
- ATGTCTGACGACGAGGTTATACGCTTCGAAATAACGGATTATGATTTAGACAACGAATTTAATCCACATAGGAATAGAAGAGCGAAAAAGGAGCAACAGATTTACGGTGTGTGGGCCAAAGACAGTGATGAGGAAGACAATGAAGACAATATCAGAAAGAGGACGCGGAAACCTAAAGATTTTTCAGCTCCAATAGGTTTCGTAGCTGGAGGAGTCCAACAGGCTGGtaagaagaaagaagaaaagaaaGAAATACAGCCAGCCGAAGCATCGACATCGCGTCCAAAGTTCGCAGCAGACAGTTCAGATGAGGACCAACCAGAAGAACCCAATGAGAGTGAGACTGCAGGTATCCGGAGACAGGGTCAGGGCATGCGTCCACCCAATCTGGGCGGGAATGTTGGTAACTGGGAGAGGCACACTAAAGGCATCGGTGCCAAGCTGTTGTTACAAATGGGATACCAACCAGGAAAAGGTTTGGGCAAGGATCTACAAGGTATCTCTGCACCTGTTGAGGCTACAGTCAGAAAAGGCAGAGGAGCCATTGGTGCCTATGGACCGGAAAAAGCAACGCAAAAAGcgaagaaagaagaagaaagacgtttaaaagaaaaagaagacCAAGACAAGGATAATAAAGAAAAGACGTACAACTGGAAGAAGTCCCACAAAGGCCGATACTTCTACAGAGACGCGGCCGACGTCATACAAGAGGGTAAACCCACGATGCATACTATTGCCAGCAGTTCGCTGTCCCAGGTGCCTGTGATCGACATGACGGGTAAGGAGAAACGCGTGCTGAGCGGGTACTCCGCCCTGAGGGCGCAGGCCCCGCGCTACGAGCACGAGCCCCGGCGCAAGTGCGACAACTTCGCCGCGCCGCAACTGCTGCACAACCTGGAGCTCATGGTTGACTGTTGTGAACAGgaTATAATCCAAAACGCACGGGAGCTACAACAAGCGGAAGACGAAATAGTGGTGTTAGAAAGGGATTTAGACGAATGTAACATCAAATTGAAGGATCACGACGAAGTCATCTCTAAAGTGGAGATGATATTGGAAAAGGTCGAGCAACTCAACAAGCCTGAAGTGTCGTTGGAAAATGCGTATGAAGTTTTGGCTGATTTGAAGgcGGCCTTCCCACTGGAATACGAAATGTTCGGTCTAGGCACGATAGCAGGGAACATAATCAGCCCACTGTTCAGTGCCATGTTAGCCACTTGGGACCCGCTGCAGACACCAGAAGAGCCGATACCCACCTTCCTCAAATGGAGGAAACTCCTCACAGAAGAAGCTTACAATAGTCTTATATGGCAACACTATGTACAGCATATCAATAATGCCGCTGAGTAA
- Protein Sequence
- MSDDEVIRFEITDYDLDNEFNPHRNRRAKKEQQIYGVWAKDSDEEDNEDNIRKRTRKPKDFSAPIGFVAGGVQQAGKKKEEKKEIQPAEASTSRPKFAADSSDEDQPEEPNESETAGIRRQGQGMRPPNLGGNVGNWERHTKGIGAKLLLQMGYQPGKGLGKDLQGISAPVEATVRKGRGAIGAYGPEKATQKAKKEEERRLKEKEDQDKDNKEKTYNWKKSHKGRYFYRDAADVIQEGKPTMHTIASSSLSQVPVIDMTGKEKRVLSGYSALRAQAPRYEHEPRRKCDNFAAPQLLHNLELMVDCCEQDIIQNARELQQAEDEIVVLERDLDECNIKLKDHDEVISKVEMILEKVEQLNKPEVSLENAYEVLADLKAAFPLEYEMFGLGTIAGNIISPLFSAMLATWDPLQTPEEPIPTFLKWRKLLTEEAYNSLIWQHYVQHINNAAE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01377490;
- 90% Identity
- -
- 80% Identity
- -