Lpop027992.1
Basic Information
- Insect
- Laothoe populi
- Gene Symbol
- -
- Assembly
- GCA_905220505.1
- Location
- HG992169.1:4992698-4996793[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-36 3.5e-32 113.1 0.3 109 275 1 163 1 163 0.97 2 2 0.32 3.8e+03 -1.8 0.0 242 270 175 203 167 218 0.47
Sequence Information
- Coding Sequence
- ATGGTCCGCGCCCTGACCTCATGGTCCGAGGCGTGTCCAGACTGGGTGCTGTCATCATGTGCCTCGCGTTACATCGTGCCTCGCGTGCTGTCTGCCGTCAGGGTGTGGGACCCGACGAGCGACGCCCAGCCTCTACACCAGTGGGTGCTGCCCTGGCATGATATAGCAGGCGACTCTCTGTCAACGGGCGTGTACCCGTTGATCCGGTCCCGGCTGGCGGCGGCGCTGGCGGGCTGGCACCCGGCGGACGCGTCCGCTCGCGGCGTGCTGGGCGCGTGGCGGCGAGCGTGGGGCGGAGCTCTCACCGCGGTGCTGCATCACCACGTGGCGCCCAAGCTCGAGCACTGTCTGCAGCACGCGCCGGTGCATCTCGTCGGGGGAGATAACACGGCATGGCAGTGGTGTGTGGACTGGCTGGAGCTGCTGGGTGCTCCGACGATAGCCGCCATCGCCAGCAGAGCGCTGTTGCCGCGGTGGCTGGCCGCGCTGGCCGCCTGGCTCAACACCAACCCTACGCACGCCACGGTACTCAACTCCTATACTGAATTCAAGaagATGTTCCCCGAGGAAGTACTGAAGGAGCCAGTAGTACGCGACGCGTTCCGCAAGGCCCTAGACATGATGAACAGGAGCACAGACCTGGATGCAGTAGAGCCCCCTCCCCCGCCCCGCTTCGCCGTCGACTCCAAAGAAACTTCTAGAATCAGTGACGTCATAGCCTCGGCCAGCCAACAGAAGAGCTTCTCGGAGTTATTGGAATCTAGATGTATTGATAAGGGCATCACGTTCGTGCCCATTGTTGGCAAGTCGCGGGAAGGAAGGCCGCTCTACAAGATAGGGAATATGCAGTGCTATGTCATTAGGAATGTGATCATGTACTCTGGTGACGGTGGGAGGAACTTTTCGcctattagtatggataagttGTTGCAGCTGGTCGAGGATTGA
- Protein Sequence
- MVRALTSWSEACPDWVLSSCASRYIVPRVLSAVRVWDPTSDAQPLHQWVLPWHDIAGDSLSTGVYPLIRSRLAAALAGWHPADASARGVLGAWRRAWGGALTAVLHHHVAPKLEHCLQHAPVHLVGGDNTAWQWCVDWLELLGAPTIAAIASRALLPRWLAALAAWLNTNPTHATVLNSYTEFKKMFPEEVLKEPVVRDAFRKALDMMNRSTDLDAVEPPPPPRFAVDSKETSRISDVIASASQQKSFSELLESRCIDKGITFVPIVGKSREGRPLYKIGNMQCYVIRNVIMYSGDGGRNFSPISMDKLLQLVED*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -