Lpop005447.2
Basic Information
- Insect
- Laothoe populi
- Gene Symbol
- bab1
- Assembly
- GCA_905220505.1
- Location
- HG992149.1:18666033-18676903[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.1e-10 1.4e-07 32.1 0.0 2 35 25 59 24 64 0.91 2 3 2.3e-17 3e-14 53.4 0.0 1 43 161 204 161 206 0.95 3 3 9 1.2e+04 -2.9 2.0 6 15 298 307 294 308 0.82
Sequence Information
- Coding Sequence
- ATGTTTGTGTTGTTGATTGGTGTGTCAGAATTCCACGGGCAAACTCTCAAGTTGAAGGCGCCCACCTGGACCCAGGGCCAGCTGCAAGAAGCGATCCAGGCCGTCGTCACCCAACGAATGAGATTCACACAAGCAGCAACCCATTACGGCATACCTAAAGGCACTTTATACGATAATATACTAGGCAAATCAAAGCGAATGGCAGTTTTAGATGAGGCTGGGCTTTTGGCTGGTGAGGAAAGAGCCGTGCTAGACTTTTGCTGCGAAACTAGCGTATCCCCTTACAATAGGAGAACTAAAAAATCATTAACAGAAATCCTGAGTTTTGTCGAGAAACTAAGAAAGACGAGGGATCCAATTTTTGCGTTTGTAGACAGCTACCAATACCAGCTGCAGTCGATGTGGCAGAAGTGCTGGAACACTAACCAGAACCTGGTGCACAACTTGAGATTCCGCGAACGCGGCCCGCTGAAGTCCTGGCGCCCAGAGACCATGGCTGAGGCCATCTTCTCTGTGCTCAAGGAAGGCCTCTCCCTCTCCCAAGCAGCGAGGAAATACGACATCCCGTACCCGACTTTCGTACTATATGCCAACCGGGTCCATAACATGCTGGGACCCAGTGCAGATGGCGGTACTGATTTGAGACCCAAGGGCCGAGGACGACCGCAGAGGATTCTGTTGGGCGTCTGGCCTGACGAGCACATCCGCGGCGTGATTCGTGCCGTCGTGTTCCGGGACACTCACGCGCCGCACACCACGCCGCACCACATGCGCGAGATCGATTTACCATCCTATCCAGCCATCACGGATGGCACCGTAACACCAAACGCCTACGCCGGCGTGGGGTGCGGGAATGGACGCGAGGAGCGCGTGTCACCGAACGCTGCCGCCGCTGCCGCCGTAGCCGCCGTCGCGCACGGCTTGCGTCGCCAGATGTGCAACATGGTGGTGGCGGCGCAGCGCCCACCTGACCAACCCCCGCACCTGGGTCTACCCTCGCTGCCGTTGCAGTCGCCGCGGCTGCCGTCGCCGATGTCCTCGGGCCTGGAGTCGCCACTGTGCTCGCCCCTGCCGCCAGGACAGGCGCTTGAGCCCGGCAAGCCGGCGGATCCATTCCGCCCATTCGTGTCGCCGCGACCGGAGAGCCGCTACGGAGAACGTGAGACGGCCGTAGAGCCAATGGAAATGGGTCCACCGAAAACGCCGGTGCAGGTGCGCAACGGTCAGCCAGCGCCACCCATGGAGCTAGAGTCGCCGACGGACGATCGCGCGGATATTTGA
- Protein Sequence
- MFVLLIGVSEFHGQTLKLKAPTWTQGQLQEAIQAVVTQRMRFTQAATHYGIPKGTLYDNILGKSKRMAVLDEAGLLAGEERAVLDFCCETSVSPYNRRTKKSLTEILSFVEKLRKTRDPIFAFVDSYQYQLQSMWQKCWNTNQNLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGTDLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDTHAPHTTPHHMREIDLPSYPAITDGTVTPNAYAGVGCGNGREERVSPNAAAAAAVAAVAHGLRRQMCNMVVAAQRPPDQPPHLGLPSLPLQSPRLPSPMSSGLESPLCSPLPPGQALEPGKPADPFRPFVSPRPESRYGERETAVEPMEMGPPKTPVQVRNGQPAPPMELESPTDDRADI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01090606;
- 90% Identity
- -
- 80% Identity
- -