Lstr000581.1
Basic Information
- Insect
- Laodelphax striatellus
- Gene Symbol
- -
- Assembly
- GCA_014465815.1
- Location
- CM025327.1:1404308-1410240[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.019 1.4e+02 4.0 0.0 20 44 228 252 213 260 0.78 2 8 0.41 3.2e+03 -0.3 0.0 26 46 262 282 256 284 0.79 3 8 0.003 23 6.5 0.4 20 45 284 309 266 313 0.76 4 8 0.0028 22 6.6 0.1 18 44 310 336 308 344 0.89 5 8 0.088 6.8e+02 1.8 0.0 26 45 346 365 341 372 0.84 6 8 0.017 1.3e+02 4.1 0.1 18 43 366 391 363 396 0.89 7 8 0.021 1.6e+02 3.8 0.1 22 48 398 424 392 428 0.83 8 8 0.0013 9.8 7.7 0.1 23 52 427 456 423 458 0.90
Sequence Information
- Coding Sequence
- ATGGTGGCTCAAATGACCCCTTTGAAAACGTCTTACGGCTCTCATTCTATATCTATATCCACCAACACCCACATATCTATTCCTACTTCTGCCACCATCCGTACTTCTTCTTCTTCTTCCTCCCGTCCTCCTCCTCTTCCTCCTCCTCCACCTCCCTCGCATCATCCTTCCAAATCGCTTCCCTCCGTACCCCCTCCCAACAATTCAACCCGCTACTTTGACCTATCGTCGTCTCACTCCAACGCACATCAATTCCCCACCCCGCACTCGTCCCGTCTCTCTTCCGCTTCTTCCCACTTCCGTCCCCTCCCTCCTCCGCCCCCTATTTCGCATTCCTCTTCGTCGCAGACGCCGAAATCGTTCTGCGACAAAGCGACGTCGCCGATACCGCAGCCGACGCCGCCCGAGGCGTCGGGATGCAACTTCTGTGGCCAACAGTGTCCACCCTACTATTGCACGCGCATGCGCCTGCCGCATCCCATGCTGCCACCCGCCATCATGCCTCCCCACTACGGTGCCAACTTCACGGAAGACTACAATTCTACAGTCAACCTGGACAAGGGCCACTTTCCGTTTCCGTTTCCCAACACCGATTCACACAACCAACAGCAGAACTTCAATTCTCGCCCAGCAATCACCGACAAACGCAGTGTGACACCACCGGAAAAGGAGATGGACACCACTGTGAATCGGCCTCACAAGTGTGATATCTGCCAGAAGGGGTTCACGACCACTAGTAACTTGAAACAGCACATGTTGATACACTCTGATGAGAAGATGCACGAGTGTAAGGACTGTTCGAAGCGGTTCAATCACTCGAGCAATCTCAAAGAACATTTGAGGGTGCATTCGGGCGAACGACCCTACACCTGTGAGGTGTGTTCGAAAACGTTCGCTCGGTCGGGCAGTTTGAAAGAGCACATGAGGCGGCACACCGGCGAGCGTCCGTTTGTGTGTCATGTGTGCAGTAAAGCGTTCTCGACGTCCGGCAATCTCAAACAACATATTATCATACACACCGGGTTGAAATCGCATCGTTGCGAGGTGTGTGACAAAACTTTCAATCACTCCAGTAACTTGAAGGAGCATATAAGGCGGCATACAGGTGAAAAACCGTACCCTTGCAGTGTGTGTGGAAAATCGTTTTCCACCTCAGGTAACCTTAAACAGCACCAGGTGATACACACGGGCGAAAAACAGTACTCGTGTGATATTTGTGGCAGAGCTTTCAATCACTCCAGCAATCTCAAGGAGCATACACGCATACATGCCGGGGTGAAACCGTTCACATGTGACCTGTGCTCGAAATCGTTCTGCAAATCGGGCAATCTCAACAAACACATGAACGTGCACACGAGGGCGTCGCCGTGTGGCATGTGCGAGAGGAATGAAGGTGAGGAGGGGAGGGGAAGCGAGGAAAAAGGGGAGGGGGTGGATGATGATGGGGAAAAAGAGGAGCGGTTTGGAGGGGGGCAGGGTAGGTGTGGCAGTGGGTTTAGTGCTGAGCATGCGCAACACATCAGACATATGTTGAGTGACTTTGTGGCGCAGGTTATGTAG
- Protein Sequence
- MVAQMTPLKTSYGSHSISISTNTHISIPTSATIRTSSSSSSRPPPLPPPPPPSHHPSKSLPSVPPPNNSTRYFDLSSSHSNAHQFPTPHSSRLSSASSHFRPLPPPPPISHSSSSQTPKSFCDKATSPIPQPTPPEASGCNFCGQQCPPYYCTRMRLPHPMLPPAIMPPHYGANFTEDYNSTVNLDKGHFPFPFPNTDSHNQQQNFNSRPAITDKRSVTPPEKEMDTTVNRPHKCDICQKGFTTTSNLKQHMLIHSDEKMHECKDCSKRFNHSSNLKEHLRVHSGERPYTCEVCSKTFARSGSLKEHMRRHTGERPFVCHVCSKAFSTSGNLKQHIIIHTGLKSHRCEVCDKTFNHSSNLKEHIRRHTGEKPYPCSVCGKSFSTSGNLKQHQVIHTGEKQYSCDICGRAFNHSSNLKEHTRIHAGVKPFTCDLCSKSFCKSGNLNKHMNVHTRASPCGMCERNEGEEGRGSEEKGEGVDDDGEKEERFGGGQGRCGSGFSAEHAQHIRHMLSDFVAQVM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00857872;
- 90% Identity
- iTF_00857872;
- 80% Identity
- iTF_00857872;