Lstr039776.1
Basic Information
- Insect
- Laodelphax striatellus
- Gene Symbol
- -
- Assembly
- GCA_014465815.1
- Location
- CM025325.1:4751331-4755785[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.017 1.3e+02 4.1 0.0 25 52 106 133 98 135 0.83 2 10 0.014 1.1e+02 4.4 0.0 21 48 158 185 146 189 0.81 3 10 0.098 7.6e+02 1.7 0.1 21 45 215 239 207 242 0.81 4 10 0.00095 7.4 8.1 0.1 21 47 243 269 238 276 0.84 5 10 0.22 1.7e+03 0.6 0.1 27 48 349 370 346 374 0.76 6 10 0.0083 64 5.1 0.2 21 46 371 396 363 402 0.85 7 10 0.047 3.6e+02 2.7 0.2 21 45 399 423 395 433 0.83 8 10 0.54 4.2e+03 -0.7 0.1 21 44 427 450 419 453 0.65 9 10 1.3e-05 0.1 14.0 0.1 21 47 455 481 446 488 0.85 10 10 0.97 7.5e+03 -1.5 0.1 22 44 484 506 480 510 0.61
Sequence Information
- Coding Sequence
- ATGCAGATGCCTAGCGTTGTTAAGCAGGAGAACGGTAGCAGTCAAGAAGAAGCGCCAGAGTCTCAAATATTCGATAATGACGGCCGACAAGATACGGGGGCTGGCTTTTGTCAAATATTCATCAAAGAAGAAGTGCAAGAAGAATATTCTGCTGAAGAGGACTGCTCCGTCGTGGAGAGCGAACCAGAGATGAGGCCTTCCATTTGCAGTACATCTGGCCAAGAAAATGCAGAAGAGGTTTCTGGACTCAACATTGGCTGTGAAAATTCCATCGCTTCAATGGCAAATGGAGAGTCTTCCAACAAGGGAAAGGTTTATACCTGTGAACTATGTAGCTACAAAACAAATTATTCAAGTAATTTGCAAAAGCATATGAGAGTGCACACTGGCGACAAACCTTTCGTATGCAATTTCTTTGATTATAAAACCTCGCAATCAGGGTACTTGAAAGTGCATCTGAGAACGCATTCAGGCGAAAAACCTTTCACATGTGAATTGTGGGACTATAAATGCTCTCGTTCTAGTAATTTGAAACTTCATCTGAAAACAACACATGCCGGCGAGAAAGCTTACAGTTGTGAACTCTGTGATTATAAATGCTCGAGTTCTAGTTATTTCAAAATTCATCTCAGAACACATTCGGGCGAAAAACCGTTCAGCTGTGAACTCTGTGACTTCAAATGCTCTCGCTCTAGTCATTTGAAACTACATCTCAGAACACATTCAGGCGAGAAACCTTTCACGTGTGAATTGTGTGACTATAAATGCTCTCAATCGACCTCCTTAAAACTCCATCTGAGGACTCATTCGGGCGAGAAACCGTTCAGCTGTGAACTCTGTGACCATAAATGCTCAAGTCCTAAAGAATATTCAGCTGAGGAGGACTGCTCCACCGTGGAGCGCGAACCAGAGATGTGGCCTTTCATTTGCAGCACATCTGGCCAAGAAAATTCAACAGAGGTTTCTGGACTCAACATTGACTGTGGAAATTCCATCTCTTCAATGGCAAAGGGAAAGTTTTCCATCAAAGGAAAACTTCGTATCTGTGAAGTGTGTAGCTACAAAACTTATGATCCAAGTAATTTGCGAAAGCATATGAGAGTGCACACTGGCGAAAAACCGTACAGCTGTAAACTTTGTGACTTTGAATGCTCTCGTTCTAGTAATTTGAAACTTCATCTGAAAACACATTCAGACGAAAAACCCTTCAGCTGTGAACTATGTGATTATAAATGCTCAAATTCTATATATTTGAAACGTCATTTCAGAAAACATTCAGACGAAAAACCGTTCAGCTGTGAACTCTGTGACTATAAATGCTCAAGGCCAGCATATTTGAAAGAACATCTCACAACACATTCAGACGAAAAACCTTTCACATGTGAATTGTGCGACTATAAATGCTCTCAATGGAGATCCTTAAGACGCCATTTGATGACTCATTCGGGCGAGAAACCATTCATCTGTGAATTCTGTGGCTATAGAAGCTCTCGAAAATGTTACTTGAAACAACATCTCAGAACTCATTTAGGTGAATAA
- Protein Sequence
- MQMPSVVKQENGSSQEEAPESQIFDNDGRQDTGAGFCQIFIKEEVQEEYSAEEDCSVVESEPEMRPSICSTSGQENAEEVSGLNIGCENSIASMANGESSNKGKVYTCELCSYKTNYSSNLQKHMRVHTGDKPFVCNFFDYKTSQSGYLKVHLRTHSGEKPFTCELWDYKCSRSSNLKLHLKTTHAGEKAYSCELCDYKCSSSSYFKIHLRTHSGEKPFSCELCDFKCSRSSHLKLHLRTHSGEKPFTCELCDYKCSQSTSLKLHLRTHSGEKPFSCELCDHKCSSPKEYSAEEDCSTVEREPEMWPFICSTSGQENSTEVSGLNIDCGNSISSMAKGKFSIKGKLRICEVCSYKTYDPSNLRKHMRVHTGEKPYSCKLCDFECSRSSNLKLHLKTHSDEKPFSCELCDYKCSNSIYLKRHFRKHSDEKPFSCELCDYKCSRPAYLKEHLTTHSDEKPFTCELCDYKCSQWRSLRRHLMTHSGEKPFICEFCGYRSSRKCYLKQHLRTHLGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00857891;
- 90% Identity
- iTF_00857891;
- 80% Identity
- iTF_00857891;