Lstr040437.1
Basic Information
- Insect
- Laodelphax striatellus
- Gene Symbol
- -
- Assembly
- GCA_014465815.1
- Location
- CM025325.1:30665604-30671414[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0091 70 5.0 0.0 10 46 105 141 100 143 0.87 2 12 0.73 5.6e+03 -1.1 0.1 18 46 178 206 162 214 0.72 3 12 0.16 1.3e+03 0.9 0.3 21 40 209 230 206 242 0.65 4 12 0.71 5.5e+03 -1.1 0.1 21 32 237 248 231 263 0.80 5 12 0.00011 0.88 11.1 0.0 21 51 265 295 257 298 0.85 6 12 0.00065 5 8.6 0.1 21 52 321 352 311 354 0.87 7 12 0.16 1.3e+03 0.9 0.1 22 44 350 372 347 381 0.83 8 12 3.1e-05 0.24 12.9 0.4 20 46 404 430 393 433 0.88 9 12 0.0016 12 7.4 0.2 21 52 433 464 429 465 0.85 10 12 0.38 3e+03 -0.2 0.1 22 44 462 484 456 492 0.83 11 12 0.53 4.1e+03 -0.7 0.3 21 32 489 500 485 514 0.76 12 12 0.00024 1.8 10.0 0.1 21 51 517 547 499 548 0.85
Sequence Information
- Coding Sequence
- ATGAGTTCGTTTGAGATTCTTGCCGCTGTCCCAATCTTGAAACTTCATAGATTGGAGGATCTTGGATTCGAGATTGCCAGCACAAGGCTAGACCCGGATCAAGACTCAAGTTGCAGTATAGAGAATGACCAAGGGAATACTAGACAGTTACAAGAGACAGAAGAGCATGAAAGCAGCAGTGGAATAGAAGATGATGCATTATCTGACGAGAACAATTATGAAATGTCGGACAGCACCTCTGATGATGATGCCTCGGATGGAGATGAAATAGATGCAGACTCCTTATCTGGTACTTCGAGTGAAGATGACCATCCGACTACGTCTAGACTCAAAAATAGATCTAGAAAGAGAGGCACATTTGCATGCTCAGTTTGTTCAAAGGTGTTACCTACTTCTCAAGGTTTCAAACTTCATATGAAAATTCACGATGGCGATACGCAAATGCGCACACTTACTAAAAAGAAACCATACTCATGTACAGTTTGTGCAAAATCTCTCCCTACGCCATCCACTTTGAAAATACATATGAGCACCCATACAGGGGAAAAGTCATACGAATGTACAGTCTGTAAGAAACGTTTTTCACAGAATGTACATTTGAATACTCATATGCTTACTCATACTAAAGAGAAGCCACATGTATGTACAATTTGTACTAAACGTTTCTCTCTTAAACACAGTTTGAATTTACATATTCGCACCCACTATTCTGAGAGGCGGCACCAATGTTCAATTTGTTTCAAATGGTTCTCTAGTTTATCTAGTTTGAAATTACACTCGGGCACTCACACCGAAGAGAAGCCCTTCATGTGTAATATCTGTTCAAAAAGTTTCACTCAGTCAGGTAATTTGAAAACTCATATGCTCATCCACACGAATGAGAAGCCGTTTCAATGTGAAATCTGTCCCAAAAGATTTTCTAGATTAGATCATGTAAAGTCACATATGCGTACTCATACTAAAGAAAAGCCATATAAATGTACAGTTTGCAGCAAAGGTTTCAATCAATCAAGTGCTTTGAAAAGCCACATGCGTTTACACACAAAAGAAAAGCCATACCAATGTGTAATTTGCACTAGACATTTTTCTCATTTAGGTAATTTAAAAAGCCACATGTTCACCCATACTGGTGAAAAACCCCATGAATGTACCGTTTGTCCCAGAAGATTCTATGATTTAGGTGCTTTAAAAGTACACAAGCGCATCCATAATAATGAGAAGCCTTATCAATGTTCAATTTGTTCTAAACGTTTCGCTCAGTCTAGTAATTTGAGAACACATATGCGCATCCATTCTGATGAGAGGCCATATCATTGTTCAGTTTGTAACAAAGGCTTTACTCAGTCTAGCAACTTGAAAATTCATGCTCGTACCCATTCTTTAGAGAAGCCTTATGAATGTGAATGTTGTTCAAAAACATTCGCGGACTCATCTAAATTGAAAATTCATATGCTCACTCATACCAAGGAAAGGCCACATCAATGTACAATTTGTACTAAACGTTTCAATCACTTGCTTACTTTGAAGAACCATATACGCACCCATACGAAAGAAAAGCCGTTTGAATGTCAAATTTGTTTTAAAAAATGGTCTCAGCAAGGAAATCTTAGTACTCATATTAAGCGTAAGCATAGTAATAAAAACTAA
- Protein Sequence
- MSSFEILAAVPILKLHRLEDLGFEIASTRLDPDQDSSCSIENDQGNTRQLQETEEHESSSGIEDDALSDENNYEMSDSTSDDDASDGDEIDADSLSGTSSEDDHPTTSRLKNRSRKRGTFACSVCSKVLPTSQGFKLHMKIHDGDTQMRTLTKKKPYSCTVCAKSLPTPSTLKIHMSTHTGEKSYECTVCKKRFSQNVHLNTHMLTHTKEKPHVCTICTKRFSLKHSLNLHIRTHYSERRHQCSICFKWFSSLSSLKLHSGTHTEEKPFMCNICSKSFTQSGNLKTHMLIHTNEKPFQCEICPKRFSRLDHVKSHMRTHTKEKPYKCTVCSKGFNQSSALKSHMRLHTKEKPYQCVICTRHFSHLGNLKSHMFTHTGEKPHECTVCPRRFYDLGALKVHKRIHNNEKPYQCSICSKRFAQSSNLRTHMRIHSDERPYHCSVCNKGFTQSSNLKIHARTHSLEKPYECECCSKTFADSSKLKIHMLTHTKERPHQCTICTKRFNHLLTLKNHIRTHTKEKPFECQICFKKWSQQGNLSTHIKRKHSNKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00857855;
- 90% Identity
- iTF_00857855;
- 80% Identity
- iTF_00857855;