Lstr014069.1
Basic Information
- Insect
- Laodelphax striatellus
- Gene Symbol
- -
- Assembly
- GCA_014465815.1
- Location
- CM025335.1:7405665-7413326[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.009 69 5.0 0.0 23 45 305 327 295 334 0.88 2 7 0.019 1.5e+02 3.9 0.1 22 46 332 356 329 359 0.89 3 7 0.0024 19 6.8 0.0 21 45 359 383 357 387 0.88 4 7 0.00031 2.4 9.7 0.2 18 46 384 412 383 419 0.88 5 7 0.0039 30 6.1 0.1 26 46 420 440 415 443 0.91 6 7 0.00085 6.6 8.3 0.2 21 46 443 468 439 474 0.90 7 7 1.1 8.2e+03 -1.6 0.1 25 43 478 496 469 499 0.84
Sequence Information
- Coding Sequence
- ATGGAAAGAATCTTCGTCAATATGAGAGAAAATCAACGAGTCTTGAATTCCCCTTATGCTGCAACAGCAGATATAGATAATCGCAGTATGGATGCAAATAGCGGAGCTAACAATTTGAAAAGCGGAAATTCGCAACAGCAACAACAAATGGATATGTCCAATGTGTCTAAGCTAAACAAAGCAAAAAGTAAGCCAGCAGCAGCAGCAAAATGGTGCAGCACCAACAATGGTGGCGGCGATGGCGGCGTGAGGAACGGAAGCGTGCAGACGCCCTATAACCAGCCAGCCACTCCCAGCTGCCAATCATCCCTGTCATCAGGGATCGCTGTCGATCAGGGACTGCCTCCTCACTATCCTTTACCTCATTATAGCATGTCGTCCTATCTATATGATATAGGTCTGTACAATAAGACTCTATTCAGCAATGTATCAACAGCACAAACTTCATCCTCCACTTTGGCTGATCATCCTCTCAAGGAGGAACAACAGCAGCAGCAGCAGCACCAAGACGGAGACAAGGCTAAGAAGAGCCAACCTGAAGGGCTACCTGAAGTCACAATGCAAACCAATGCTCGCGATAAGCATACCAAAATGACACAAACTGAAATTAGTACCACAAGAGGCATACCTCCAGAGTTTATGGCATTCATGAGAGATGGAACTGGAGTGAATGATTTGAAGAACTCGTTCTCGGCAGCTTCAAGCAATGCCACTAGAAGCCTCGAGCTCATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGATGTCGACGGCAGTGGTTCGGCAGCCACCGCCACTCGAGCCATCTGATCGACGGCCCTACTCTTGTGACACCTGCTTCAAATGTTTCACCACGTCGGGCAACCTCAAACAACACATTGTCATCCACTCTGGTGAAAAGGTGCACACTTGCGAGTACTGCCCCAAATCGTTCAACCACTCCAGCAATCTGAAGGAGCATCTCAGGATACACACTGGCGAGCGACCATACACCTGCGATGTCTGCGACAAGACGTTCGTCCGCTCTGGCAGCCTGAGGGAGCACATGCGCAGGCATACGGGTGAAAGGCCCTACATCTGCATTGTGTGTCACAAGGCTTTCTCAACCTCGTCCAACCTAAAGCAGCATCTCACCATCCATTCGGGAGTCAAGCACTACACATGTAGCGTTTGCTTGAAGTCGTTCAATCATTCGAGTAACTTGAAAGAACATCTTCGAATTCATAGTGGTGAACGCCCGTTCTCGTGTCACATTTGTAACAAGTCGTTCTGTAAATCATCCAACCTGAACAAGCATATGTCGATACATTCTGGCGAACTGGCACAGAAGAACTATTCGTGTAATGTGTGTTCAAAGACGTTTTCGCGCGCCACCAACGCGAGGCAGCACACAAGAAAATACTGTTCGGGCTCGGTGTTCGCCCACACCACCGAGGCCGCCGCCCCCCACCCTCACCCGCACCACCACCAACATGTTATGGCCGACTTTGTTGGTGAGGTCGTCTAG
- Protein Sequence
- MERIFVNMRENQRVLNSPYAATADIDNRSMDANSGANNLKSGNSQQQQQMDMSNVSKLNKAKSKPAAAAKWCSTNNGGGDGGVRNGSVQTPYNQPATPSCQSSLSSGIAVDQGLPPHYPLPHYSMSSYLYDIGLYNKTLFSNVSTAQTSSSTLADHPLKEEQQQQQQHQDGDKAKKSQPEGLPEVTMQTNARDKHTKMTQTEISTTRGIPPEFMAFMRDGTGVNDLKNSFSAASSNATRSLELMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLMSTAVVRQPPPLEPSDRRPYSCDTCFKCFTTSGNLKQHIVIHSGEKVHTCEYCPKSFNHSSNLKEHLRIHTGERPYTCDVCDKTFVRSGSLREHMRRHTGERPYICIVCHKAFSTSSNLKQHLTIHSGVKHYTCSVCLKSFNHSSNLKEHLRIHSGERPFSCHICNKSFCKSSNLNKHMSIHSGELAQKNYSCNVCSKTFSRATNARQHTRKYCSGSVFAHTTEAAAPHPHPHHHQHVMADFVGEVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00857903;
- 90% Identity
- iTF_00857903;
- 80% Identity
- iTF_00857903;