Basic Information

Insect: Laodelphax striatellus
Gene Symbol: RREB1
Assembly: GCA_014465815.1
Location: CM025335.1:29325608-29332621[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.018 2.1 10.3 0.8 3 23 2 22 1 22 0.97

2 13 0.00074 0.088 14.6 0.5 3 23 50 70 48 70 0.97

3 13 7.1e-06 0.00084 21.0 3.9 1 23 76 98 76 98 0.99

4 13 1.9 2.3e+02 3.9 0.3 1 23 253 277 253 277 0.91

5 13 0.00083 0.099 14.4 0.0 1 21 355 375 355 376 0.95

6 13 0.046 5.4 9.0 0.1 1 23 591 613 591 613 0.97

7 13 2.3e-05 0.0027 19.4 2.2 1 23 625 647 625 647 0.99

8 13 0.0015 0.17 13.7 4.8 1 23 653 676 653 676 0.97

9 13 0.0012 0.14 14.0 2.8 1 23 1276 1299 1276 1299 0.96

10 13 0.00063 0.075 14.8 0.4 2 23 1576 1597 1575 1597 0.97

11 13 0.87 1e+02 4.9 7.3 1 23 1603 1626 1603 1626 0.96

12 13 0.00074 0.087 14.6 1.7 1 23 1675 1699 1675 1699 0.96

13 13 0.11 13 7.8 0.8 1 23 1783 1806 1783 1806 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.018	2.1	10.3	0.8	3	23	2	22	1	22	0.97
2	13	0.00074	0.088	14.6	0.5	3	23	50	70	48	70	0.97
3	13	7.1e-06	0.00084	21.0	3.9	1	23	76	98	76	98	0.99
4	13	1.9	2.3e+02	3.9	0.3	1	23	253	277	253	277	0.91
5	13	0.00083	0.099	14.4	0.0	1	21	355	375	355	376	0.95
6	13	0.046	5.4	9.0	0.1	1	23	591	613	591	613	0.97
7	13	2.3e-05	0.0027	19.4	2.2	1	23	625	647	625	647	0.99
8	13	0.0015	0.17	13.7	4.8	1	23	653	676	653	676	0.97
9	13	0.0012	0.14	14.0	2.8	1	23	1276	1299	1276	1299	0.96
10	13	0.00063	0.075	14.8	0.4	2	23	1576	1597	1575	1597	0.97
11	13	0.87	1e+02	4.9	7.3	1	23	1603	1626	1603	1626	0.96
12	13	0.00074	0.087	14.6	1.7	1	23	1675	1699	1675	1699	0.96
13	13	0.11	13	7.8	0.8	1	23	1783	1806	1783	1806	0.96

Sequence Information

Coding Sequence: ATGTGCCCGATTTGCAACGTGCTACTGACTTCGCAGCATGAGTTCACATTGCACATACGTTCACACAATAACAACAACGGTGATGCATCAACAAATCACACGTCAGGTGAAGATGAGTGCCTACTTGCTGGTGGAAAAGGGTATGGTTGCTGCATTTGTGGCAAAGTTCTCAGCTCATCCAGCTCATTGGATAGACATGTGTTGGTGCATTCTGGCGAGCGTCCTTTCAAATGTAGCATCTGTAGAGTGAGTTTCACCACTAATGGAAATATGCATCGTCATATGAGAACCCATAATGTTACAGGCAGTGGCAAGGCAATAAATAACTTATCATCAATCAAAATGAATGGTGGTAATCCTTTAGAGAGCAGCTATGAAAGTGATTGTGGATCAGACAGTTCTGGAACAGGTTCAACATTGTCTCCATGCTTGAAGCGGCGCAAAACTTCCAATAACAGTTTTCGTGGTGGCGCGAAAACTTTCACCGATTCAAATTCAATGCTACAAAGAGATTTAGAATCGAAGGTAGAGACAAATTTCAACCCTGTGTCCACTCCTTTGACTAATAAGAGGAAGAACTCAGACATAGATTCTTCATTGGATGACAGTGGAAAGAAGGAGCAACACAACAAACTGTGTTCAAATACAGTTGTCAGAAACAATTTTTCCGTAACTTCTACAGTGTCAAATTCTCGTCGCAGAAGCTCAAAGAACAGCTCCAGCTCTGATGGAGAAGAGCGCAAAACAGTCAGCAAGTTCAAGTGTGTGGTTTGCAAGCGTGAAGACTTCTCATCACTCAACCTACTAGAGACGCATCTTGAGGCCAAGCACCCTGAGTTTAAAGCTTGCTGTGAGCCTTGCAATTTGGAATTCAAGAACCACCGTGCATTGAATCTACACCGATTCATGAAGCATCCAGATCATGAGAGCCCGACAAATGGAAGAGACATAGTTGGATTTGATGATTTAACATTTGTTGACTTCTCAAGTGAGAAATTCCCATACATAGCAAAAACAGTATGTGAAAAAAGTCTCCATAAAGCTAGTTCAACACAATTGAAATTTCAATGTGAAATATGCCAACGAGCTTTTCCACTGGCATCTGCATTGACAATACATCAACAAAGCTGTTTACAAGCTGCTAATGAGAAAACTAAAACTGGTTGTGCTCTAGAGAATGAGCTTAACTGTAGGAAAAATCACCACAAATCAAGAGGAAATATGTTGACCACTGATGCTTCATCAGAAGATGAATCTTCAGACGTTTTCACTCCTTACTCTAAAATTTCTTCTTATGATCACCATACTGAAATGTCAGAGTCTGAGGAGAGTGATGAGCAGAGACGAGATAGCTTCTTTGCTAGATTGGATCTAAGAAATAAACTGACTCCCGATTATCTCTCCCCAACAAGTGATGAAGAGCTGATGAATAATTCTACCAAGAATATAAGTTTGCAACCGACTTCCACCCAGCATCCCCACATGAATTACAAACTCAATTGTAATATAGCTCAAAATTTAACAAGAAATTTGAAAACTTTATGTGGATCAAACATGTCAGTATTATCTGAAGTACGAGACTTGGCTGATATCCAGAGTATAATCTCAGTTACTTCAGCTGGAAACACAATGCTACCAGATCTTTCAAAGAGTCCTCAGCCATCGACCACAATCACTGATGTCACTCCGCCCGATTCAGCATCAAGAGAAGAGGAAGAACAGCAAGACTGCTTTGCTGCTGAGTTCAGAAAGATGAAGCTGAGAGGAGAGTTCCCCTGCCGCCTCTGCACTGCTGTATTTCCCAATCTCAGAGCACTCAAAGGTCATAATCGAGTTCATTTAGTATCTTCCAGCTCTGGTGCCAATTTACCATATCGATGCAACATGTGTCCACATTTTAGCAATGATAAATCAGCACTGATCCGTCATATGCGAACACATAATGGAGATCGACCCTATGAGTGCAGTATATGTCATTATGCATTTACCACCAAAGCAAACTGTGAGCGTCATTTGAGAAATCGTCATGCAAAAATGACAAGGGAGGATGTGAAGAAGTCAATAATATACCATCCTTCAGAGGACCCAACAAATGATATAAATGGAACAAGCCTCTTGTTCAAGCCTGAACTCAACTGCAATGATATCAAAAGAACACTATTCTCAGATCGGCTGAAGGAGAATATTGTCTCATCAAATGAGTCCTTATCAATTGACTTGGACAAAGAAGCAATGAAAACTTTTCCAGCATCCAACACTGATTTGTCAAACAATTTGTCAATGGTTAGTACACAAACCGCGGAAGCAATAAGACCAAACAAGAAGTCACAGAACACTATCACCTCCAACTTGCTATCACGACTTTCATCAAATATTGGAGTCAAATTTGATCAAGATGATCATAATATAACACAAGAGGAATATCATAATGAAGTTGGTATAGTTAATCTGACAAGAGATATGCATAACAAACGTAGAAAGAGTCTGGATGTAGCAACAATGACGTCTGAAGAAGATGTAAACAATGATGAGGATGATGAAGAAAATGATATTGTTGATATGTCTGATTTGAATAATAAAAATGAAGATAAACCATTGGATTTGAGTATGGATGCCTTAGATCTAAGTCGCAAACGTCAGGATTTCATAAAGCATGACTCTATGGAAAGTAAAAAGTCTGATTTTAGAGGATTTGGTGTGAGTGAGGATGATGCTAGTAGTACAGATTACGATAATCATCCAGCAGACTTACCTCAAGATTTGAGCAAGAAGAAAGTTGTTGAAGTGACTGATGATTTTGAGGAAAATGATCATAATGATTTTGAAGATGAAGACATGATAGATGTAACAGGGGATGGAGAAAAAGAAAACGATTCGATGCCTAAACAAATGAAACAAACTACTACAGAAGTTGATGAGTCACAGCACCTCCATTCAGGCCTGGAAAATGCTGAGCTCCTCAACTTTCCAAAATTGAATCTTTCTCAGTTCTATGCGGCTGCTGCAGCAGCAGGTAATGTTGGAACTGCTTTACCATCAACATTTTTCTTGAACAATAATACTACAAACTCAAATAACAATAATAATAATGCTTTCTCACCATTTGCTGGAGCCGCAAATCCTGCTGCAGCGGCTGCTCTATTTTCCTGCTCTCCTTACTTCCTGGCTCCACATCCAGGAGTTATGTTCCCAAGAAATCTGACTCAAGACTATATGCTGGAAGTGAAGGAGCGCATCCACAAAGACCTGATGAGAGGACTCCAGCTGTCATCTGGTGGCTCTCTCATATTGGATCAAATCGCTATGGCTACAGCTGCAGATCGTATACAAACTCTCCATAACCAAGCACTTATGGAGTACAATCGGAGAATGGAGAGCTCAGTTCCTCTGAATTTGATTGATGCTTTGAACCAGAATTTTGTTGGTAAGCCTCCTGATGCAAATGAGAATAATAATAACAACTATAATAATAACAAAAATAAGACCAGCCCAATGCAGCAAACAGTAATCAATCCACATGCCACTCCTTCTACATCGCCACTACTAAGAAACGTCGCATCCCCCAATACATCTCCTTCACCAATGGGATTAGTGGATAAATCTATTCCAAAGTTCAACAGTGGCTTCAGCTTGGCACGGAAAAACGTCCTTGTACCAGGAATGAATAATACTGTTGTAAAAAGTCCTCGGGCTCCAAGCTCAACCAATAACAATGTCAGCAGCGATAATATGTCTCCATCATCTGCTTCATCTGTGAAAATGGTGATCAAGAATGGTGTACTGATTCCCAAGCAAAAACAACGACGATACCGGACTGAACGACCATTCTCCTGCGAACACTGCTCAGCTCGTTTCACTCTTCGTTCAAACATGGAGCGTCATATAAAGCAGCAACATCCTCAGTATTGGACCCAGAGACAGAGATCAGGCCACGGTGCTGGAAGGAGGGCTCAGTCTAGGAACAATCTCCAACCGACGGGCAGCTTGAACAGTCAGCTGTCATACTTTCCTCATCTTGCTGTTGCAAGTGGATCTGATAATGAAACCAGTCGGCCATGCTCACCACGGGAGGATCCTATCAAAGAGACTTCTGTCCTCATGGATGTGGGCAGGACCATATCAGATGAAGTGAAGCATGCCATTGCCTTGCAGTTGAAATCGAAAAATCCTATCATACAGGACAGCAAAGAATCTATCATCAATAGAGAAGAGAAACTTGTTGATCAGAAACCAACCAATGAAATTGAAGAAGATGACAATGTGTCTTATGCTGAAGAAGAAACTAGTGAGAGACTTGTTATTGATGAAGAGAGAATAGTCACTGACACAGAGAATGAAGATGTTGAAATGAAAAATGAAGCAGGAGCTGAAGAAGAGAAAGACTCTAAGGTTCCCCAATCTAAATATCTGCCATCAGCCAAAAAAGAAACTGACAAAATTCCATTCCAAAAAGATGAGAATCTCAACATAGATCTAGCATCGGTGTCTAGATTGCTTGATAATGCTTCCACGCAAACATTCAAGGAATATTTTCATAACGATGACGACCAGATCCGTGATGAGAACAGCGAGGAGGATGAGGAGGGCCTAGTTGCAGCCAACAGTGAGGGCAACAATTCCGGAAGTGATGAAAATAAATCTGAATCAGACACAGCCGGCAGTAGCATGGGAAATCGTCAGGGCGAGAAGAAGAAGAGCGCCTACTCGCTGGCACCAAACCGCGTTTCCTGTCCTTACTGCTCCAGGAAATTCCCTTGGTCATCGTCATTGAGACGACATGTTCTCACCCACACTGGCCAAAAGCCCTTCAAATGTTCGCATTGCTCCCTACTTTTCACCACCAAATCAAACTGTGATCGCCACTTACTGAGAAAACATGGCAATAACAATAGCTCGAATACAAATAACAACAACAGTATCACCAATGATTCTAATACTACTGGCGATGAAGTCCAAGGTAGAATTCTAGAGAACGGTATCTCCGAGGATTGCTACACTATGAGAAACGTCCCAGAAAGACCCTACAAGTGCAAATACTGTCCCAGTTCGACATTTTCCACTCTGAGCAACCTGAGGAAGCATATTGCGTCGAAGCACCCGAACTGCAGTATTCCTGGTTTAAGAGGTAGTGCCAAAAGGAGCAGCTGTGATGGTTATGAAAGTCAACAAAGCTCCACAGAAGATGCCGAATCTGATGTGGCTGCAGCAGAGATCAAATTGAGTCAAGAAGATGTCAATGCAACCAAAGCTATCGACAACTTGCCCAAAGTAGGCGCTGAGTCGGCAACGCTCAGACCTCTCCCATCGCTCAATCCAGAAACGTCAGTCTCCTCCTCTGATCTACCATTCAAGTGTCATCTGTGTGACAACAGCTTTGGAGAACGCCAAGACGCCTTGGATCACATTAGAGAAACTCATGAATCCGAGTATGCGCTGCTTGCGATGAAAGGGGCCCTTGACTCCGGCACCGCCGATGAAGCATTTCATCTGGACGATCCCAATGGCGAGGAAAGTCTTGAACAATTGCGAGGAAAATTTCCGGACTATGCCAACCGGAAGGTATTCCTAGTACTAAGACAAAGGAAACCTTATTACGTAATTATTCAATTTTTTTACTGA
Protein Sequence: MCPICNVLLTSQHEFTLHIRSHNNNNGDASTNHTSGEDECLLAGGKGYGCCICGKVLSSSSSLDRHVLVHSGERPFKCSICRVSFTTNGNMHRHMRTHNVTGSGKAINNLSSIKMNGGNPLESSYESDCGSDSSGTGSTLSPCLKRRKTSNNSFRGGAKTFTDSNSMLQRDLESKVETNFNPVSTPLTNKRKNSDIDSSLDDSGKKEQHNKLCSNTVVRNNFSVTSTVSNSRRRSSKNSSSSDGEERKTVSKFKCVVCKREDFSSLNLLETHLEAKHPEFKACCEPCNLEFKNHRALNLHRFMKHPDHESPTNGRDIVGFDDLTFVDFSSEKFPYIAKTVCEKSLHKASSTQLKFQCEICQRAFPLASALTIHQQSCLQAANEKTKTGCALENELNCRKNHHKSRGNMLTTDASSEDESSDVFTPYSKISSYDHHTEMSESEESDEQRRDSFFARLDLRNKLTPDYLSPTSDEELMNNSTKNISLQPTSTQHPHMNYKLNCNIAQNLTRNLKTLCGSNMSVLSEVRDLADIQSIISVTSAGNTMLPDLSKSPQPSTTITDVTPPDSASREEEEQQDCFAAEFRKMKLRGEFPCRLCTAVFPNLRALKGHNRVHLVSSSSGANLPYRCNMCPHFSNDKSALIRHMRTHNGDRPYECSICHYAFTTKANCERHLRNRHAKMTREDVKKSIIYHPSEDPTNDINGTSLLFKPELNCNDIKRTLFSDRLKENIVSSNESLSIDLDKEAMKTFPASNTDLSNNLSMVSTQTAEAIRPNKKSQNTITSNLLSRLSSNIGVKFDQDDHNITQEEYHNEVGIVNLTRDMHNKRRKSLDVATMTSEEDVNNDEDDEENDIVDMSDLNNKNEDKPLDLSMDALDLSRKRQDFIKHDSMESKKSDFRGFGVSEDDASSTDYDNHPADLPQDLSKKKVVEVTDDFEENDHNDFEDEDMIDVTGDGEKENDSMPKQMKQTTTEVDESQHLHSGLENAELLNFPKLNLSQFYAAAAAAGNVGTALPSTFFLNNNTTNSNNNNNNAFSPFAGAANPAAAAALFSCSPYFLAPHPGVMFPRNLTQDYMLEVKERIHKDLMRGLQLSSGGSLILDQIAMATAADRIQTLHNQALMEYNRRMESSVPLNLIDALNQNFVGKPPDANENNNNNYNNNKNKTSPMQQTVINPHATPSTSPLLRNVASPNTSPSPMGLVDKSIPKFNSGFSLARKNVLVPGMNNTVVKSPRAPSSTNNNVSSDNMSPSSASSVKMVIKNGVLIPKQKQRRYRTERPFSCEHCSARFTLRSNMERHIKQQHPQYWTQRQRSGHGAGRRAQSRNNLQPTGSLNSQLSYFPHLAVASGSDNETSRPCSPREDPIKETSVLMDVGRTISDEVKHAIALQLKSKNPIIQDSKESIINREEKLVDQKPTNEIEEDDNVSYAEEETSERLVIDEERIVTDTENEDVEMKNEAGAEEEKDSKVPQSKYLPSAKKETDKIPFQKDENLNIDLASVSRLLDNASTQTFKEYFHNDDDQIRDENSEEDEEGLVAANSEGNNSGSDENKSESDTAGSSMGNRQGEKKKSAYSLAPNRVSCPYCSRKFPWSSSLRRHVLTHTGQKPFKCSHCSLLFTTKSNCDRHLLRKHGNNNSSNTNNNNSITNDSNTTGDEVQGRILENGISEDCYTMRNVPERPYKCKYCPSSTFSTLSNLRKHIASKHPNCSIPGLRGSAKRSSCDGYESQQSSTEDAESDVAAAEIKLSQEDVNATKAIDNLPKVGAESATLRPLPSLNPETSVSSSDLPFKCHLCDNSFGERQDALDHIRETHESEYALLAMKGALDSGTADEAFHLDDPNGEESLEQLRGKFPDYANRKVFLVLRQRKPYYVIIQFFY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00857926; iTF_01354057;
90% Identity: iTF_00857926;
80% Identity: -