Basic Information

Insect: Laodelphax striatellus
Gene Symbol: RREB1
Assembly: GCA_014465815.1
Location: CM025335.1:29104084-29156312[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0044 0.52 12.2 0.9 1 23 129 151 129 151 0.98

2 15 0.00084 0.099 14.4 0.5 3 23 179 199 177 199 0.97

3 15 8e-06 0.00096 20.8 3.9 1 23 205 227 205 227 0.99

4 15 2.2 2.6e+02 3.7 0.3 1 23 382 406 382 406 0.91

5 15 0.00094 0.11 14.3 0.0 1 21 484 504 484 505 0.95

6 15 0.052 6.2 8.8 0.1 1 23 720 742 720 742 0.97

7 15 2.6e-05 0.003 19.2 2.2 1 23 754 776 754 776 0.99

8 15 0.0017 0.2 13.5 4.8 1 23 782 805 782 805 0.97

9 15 0.0013 0.16 13.8 2.8 1 23 1405 1428 1405 1428 0.96

10 15 0.00072 0.085 14.7 0.4 2 23 1705 1726 1704 1726 0.97

11 15 0.99 1.2e+02 4.8 7.3 1 23 1732 1755 1732 1755 0.96

12 15 0.00084 0.099 14.4 1.7 1 23 1804 1828 1804 1828 0.96

13 15 0.12 14 7.7 0.8 1 23 1912 1935 1912 1935 0.96

14 15 0.0062 0.73 11.7 0.5 3 23 1985 2005 1983 2005 0.96

15 15 0.014 1.7 10.6 5.9 1 23 2011 2033 2011 2033 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0044	0.52	12.2	0.9	1	23	129	151	129	151	0.98
2	15	0.00084	0.099	14.4	0.5	3	23	179	199	177	199	0.97
3	15	8e-06	0.00096	20.8	3.9	1	23	205	227	205	227	0.99
4	15	2.2	2.6e+02	3.7	0.3	1	23	382	406	382	406	0.91
5	15	0.00094	0.11	14.3	0.0	1	21	484	504	484	505	0.95
6	15	0.052	6.2	8.8	0.1	1	23	720	742	720	742	0.97
7	15	2.6e-05	0.003	19.2	2.2	1	23	754	776	754	776	0.99
8	15	0.0017	0.2	13.5	4.8	1	23	782	805	782	805	0.97
9	15	0.0013	0.16	13.8	2.8	1	23	1405	1428	1405	1428	0.96
10	15	0.00072	0.085	14.7	0.4	2	23	1705	1726	1704	1726	0.97
11	15	0.99	1.2e+02	4.8	7.3	1	23	1732	1755	1732	1755	0.96
12	15	0.00084	0.099	14.4	1.7	1	23	1804	1828	1804	1828	0.96
13	15	0.12	14	7.7	0.8	1	23	1912	1935	1912	1935	0.96
14	15	0.0062	0.73	11.7	0.5	3	23	1985	2005	1983	2005	0.96
15	15	0.014	1.7	10.6	5.9	1	23	2011	2033	2011	2033	0.98

Sequence Information

Coding Sequence: ATGATAGACATGGCTTCGGGAACGATACCATGTCAAATGACAGTTTCATTGATGCGTGACCAAAGTGATCCGAAAGCTTCTTCATTGGATGTAACCGACGAGACCGCTGGCCGGTCAAAGAAAATGACTTCATTTGAGAAACAACCAAAGCTTTCTGATACCAAAGTGAATGAAAAAGCAGATGACAATTATACCAAAGAACAAGATACCCACGAAAAAAACGATGATTGGAGAACGAAAAATGGATATACCAAAGCCTCTGACAATATCGAAAGAAACGAGACTGAAAACTTAGAAGATGGATCTTCTTCAAAAATGAACATCGATAAGCAGACGAAGAGCTCCGACAACGAATCTGTTGAAGCAGACAACGAAGTGAGCCGATTCATGTGCCCGATTTGCAACGTGCTACTGACTTCGCAGCATGAGTTCACATTGCACATACGTTCACACAATAACAACAACGGTGATGCATCAACAAATCACACGTCAGGTGAAGATGAGTGCCTACTTGCTGGTGGAAAAGGGTATGGTTGCTGCATTTGTGGCAAAGTTCTCAGCTCATCCAGCTCATTGGATAGACATGTGTTGGTGCATTCTGGCGAGCGTCCTTTCAAATGTAGCATCTGTAGAGTGAGTTTCACCACTAATGGAAATATGCATCGTCATATGAGAACCCATAATGTTACAGGCAGTGGCAAGGCAATAAATAACTTATCATCAATCAAAATGAATGGTGGTAATCCTTTAGAGAGCAGCTATGAAAGTGATTGTGGATCAGACAGTTCTGGAACAGGTTCAACATTGTCTCCATGCTTGAAGCGGCGCAAAACTTCCAATAACAGTTTTCGTGGTGGCGCGAAAACTTTCACCGATTCAAATTCAATGCTACAAAGAGATTTAGAATCGAAGGTAGAGACAAATTTCAACCCTGTGTCCACTCCTTTGACTAATAAGAGGAAGAACTCAGACATAGATTCTTCATTGGATGACAGTGGAAAGAAGGAGCAACACAACAAACTGTGTTCAAATACAGTTGTCAGAAACAATTTTTCCGTAACTTCTACAGTGTCAAATTCTCGTCGCAGAAGCTCAAAGAACAGCTCCAGCTCTGATGGAGAAGAGCGCAAAACAGTCAGCAAGTTCAAGTGTGTGGTTTGCAAGCGTGAAGACTTCTCATCACTCAACCTACTAGAGACGCATCTTGAGGCCAAGCACCCTGAGTTTAAAGCTTGCTGTGAGCCTTGCAATTTGGAATTCAAGAACCACCGTGCATTGAATCTACACCGATTCATGAAGCATCCAGATCATGAGAGCCCGACAAATGGAAGAGACATAGTTGGATTTGATGATTTAACATTTGTTGACTTCTCAAGTGAGAAATTCCCATACATAGCAAAAACAGTATGTGAAAAAAGTCTCCATAAAGCTAGTTCAACACAATTGAAATTTCAATGTGAAATATGCCAACGAGCTTTTCCACTGGCATCTGCATTGACAATACATCAACAAAGCTGTTTACAAGCTGCTAATGAGAAAACTAAAACTGGTTGTGCTCTAGAGAATGAGCTTAACTGTAGGAAAAATCACCACAAATCAAGAGGAAATATGTTGACCACTGATGCTTCATCAGAAGATGAATCTTCAGACGTTTTCACTCCTTACTCTAAAATTTCTTCTTATGATCACCATACTGAAATGTCAGAGTCTGAGGAGAGTGATGAGCAGAGACGAGATAGCTTCTTTGCTAGATTGGATCTAAGAAATAAACTGACTCCCGATTATCTCTCCCCAACAAGTGATGAAGAGCTGATGAATAATTCTACCAAGAATATAAGTTTGCAACCGACTTCCACCCAGCATCCCCACATGAATTACAAACTCAATTGTAATATAGCTCAAAATTTAACAAGAAATTTGAAAACTTTATGTGGATCAAACATGTCAGTATTATCTGAAGTACGAGACTTGGCTGATATCCAGAGTATAATCTCAGTTACTTCAGCTGGAAACACAATGCTACCAGATCTTTCAAAGAGTCCTCAGCCATCGACCACAATCACTGATGTCACTCCGCCCGATTCAGCATCAAGAGAAGAGGAAGAACAGCAAGACTGCTTTGCTGCTGAGTTCAGAAAGATGAAGCTGAGAGGAGAGTTCCCCTGCCGCCTCTGCACTGCTGTATTTCCCAATCTCAGAGCACTCAAAGGTCATAATCGAGTTCATTTAGTATCTTCCAGCTCTGGTGCCAATTTACCATATCGATGCAACATGTGTCCACATTTTAGCAATGATAAATCAGCACTGATCCGTCATATGCGAACACATAATGGAGATCGACCCTATGAGTGCAGTATATGTCATTATGCATTTACCACCAAAGCAAACTGTGAGCGTCATTTGAGAAATCGTCATGCAAAAATGACAAGGGAGGATGTGAAGAAGTCAATAATATACCATCCTTCAGAGGACCCAACAAATGATATAAATGGAACAAGCCTCTTGTTCAAGCCTGAACTCAACTGCAATGATATCAAAAGAACACTATTCTCAGATCGGCTGAAGGAGAATATTGTCTCATCAAATGAGTCCTTATCAATTGACTTGGACAAAGAAGCAATGAAAACTTTTCCAGCATCCAACACTGATTTGTCAAACAATTTGTCAATGGTTAGTACACAAACCGCGGAAGCAATAAGACCAAACAAGAAGTCACAGAACACTATCACCTCCAACTTGCTATCACGACTTTCATCAAATATTGGAGTCAAATTTGATCAAGATGATCATAATATAACACAAGAGGAATATCATAATGAAGTTGGTATAGTTAATCTGACAAGAGATATGCATAACAAACGTAGAAAGAGTCTGGATGTAGCAACAATGACGTCTGAAGAAGATGTAAACAATGATGAGGATGATGAAGAAAATGATATTGTTGATATGTCTGATTTGAATAATAAAAATGAAGATAAACCATTGGATTTGAGTATGGATGCCTTAGATCTAAGTCGCAAACGTCAGGATTTCATAAAGCATGACTCTATGGAAAGTAAAAAGTCTGATTTTAGAGGATTTGGTGTGAGTGAGGATGATGCTAGTAGTACAGATTACGATAATCATCCAGCAGACTTACCTCAAGATTTGAGCAAGAAGAAAGTTGTTGAAGTGACTGATGATTTTGAGGAAAATGATCATAATGATTTTGAAGATGAAGACATGATAGATGTAACAGGGGATGGAGAAAAAGAAAACGATTCGATGCCTAAACAAATGAAACAAACTACTACAGAAGTTGATGAGTCACAGCACCTCCATTCAGGCCTGGAAAATGCTGAGCTCCTCAACTTTCCAAAATTGAATCTTTCTCAGTTCTATGCGGCTGCTGCAGCAGCAGGTAATGTTGGAACTGCTTTACCATCAACATTTTTCTTGAACAATAATACTACAAACTCAAATAACAATAATAATAATGCTTTCTCACCATTTGCTGGAGCCGCAAATCCTGCTGCAGCGGCTGCTCTATTTTCCTGCTCTCCTTACTTCCTGGCTCCACATCCAGGAGTTATGTTCCCAAGAAATCTGACTCAAGACTATATGCTGGAAGTGAAGGAGCGCATCCACAAAGACCTGATGAGAGGACTCCAGCTGTCATCTGGTGGCTCTCTCATATTGGATCAAATCGCTATGGCTACAGCTGCAGATCGTATACAAACTCTCCATAACCAAGCACTTATGGAGTACAATCGGAGAATGGAGAGCTCAGTTCCTCTGAATTTGATTGATGCTTTGAACCAGAATTTTGTTGGTAAGCCTCCTGATGCAAATGAGAATAATAATAACAACTATAATAATAACAAAAATAAGACCAGCCCAATGCAGCAAACAGTAATCAATCCACATGCCACTCCTTCTACATCGCCACTACTAAGAAACGTCGCATCCCCCAATACATCTCCTTCACCAATGGGATTAGTGGATAAATCTATTCCAAAGTTCAACAGTGGCTTCAGCTTGGCACGGAAAAACGTCCTTGTACCAGGAATGAATAATACTGTTGTAAAAAGTCCTCGGGCTCCAAGCTCAACCAATAACAATGTCAGCAGCGATAATATGTCTCCATCATCTGCTTCATCTGTGAAAATGGTGATCAAGAATGGTGTACTGATTCCCAAGCAAAAACAACGACGATACCGGACTGAACGACCATTCTCCTGCGAACACTGCTCAGCTCGTTTCACTCTTCGTTCAAACATGGAGCGTCATATAAAGCAGCAACATCCTCAGTATTGGACCCAGAGACAGAGATCAGGCCACGGTGCTGGAAGGAGGGCTCAGTCTAGGAACAATCTCCAACCGACGGGCAGCTTGAACAGTCAGCTGTCATACTTTCCTCATCTTGCTGTTGCAAGTGGATCTGATAATGAAACCAGTCGGCCATGCTCACCACGGGAGGATCCTATCAAAGAGACTTCTGTCCTCATGGATGTGGGCAGGACCATATCAGATGAAGTGAAGCATGCCATTGCCTTGCAGTTGAAATCGAAAAATCCTATCATACAGGACAGCAAAGAATCTATCATCAATAGAGAAGAGAAACTTGTTGATCAGAAACCAACCAATGAAATTGAAGAAGATGACAATGTGTCTTATGCTGAAGAAGAAACTAGTGAGAGACTTGTTATTGATGAAGAGAGAATAGTCACTGACACAGAGAATGAAGATGTTGAAATGAAAAATGAAGCAGGAGCTGAAGAAGAGAAAGACTCTCAGGCTCCCCAATCTAAATATCTGCCATCAGCCAAAAAAGAAACTGACAAAATTCCATTCCAAAAAGATGAGAATCTCAACATAGATCTAGCATCGGTGTCTAGATTGCTTGATAATGCTTCCACGCAAACATTCAAGGAATATTTTCATAACGATGACGACCAGATCCGTGATGAGAACAGCGAGGAGGATGAGGAGGGCCTAGTTGCAGCCAACAGTGAGGGCAACAATTCCGGAAGTGATGAAAATAAATCTGAATCAGACACAGCCGGCAGTAGCATGGGAAATCGTCAGGGCGAGAAGAAGAAGAGCGCCTACTCGCTGGCACCAAACCGCGTTTCCTGTCCTTACTGCTCCAGGAAATTCCCTTGGTCATCGTCATTGAGACGACATGTTCTCACCCACACTGGCCAAAAGCCCTTCAAATGTTCGCATTGCTCCCTACTCTTCACCACCAAATCAAACTGTGATCGCCACTTACTGAGAAAACATGGCAATAACAACAGCTCGAATACAAATAACAACAATAGTATCACCAATGATTCTAATACTACTGGCGATGAAGTCCAAGGTAGAATTCTAGAGAACGGTGTCTCCGAGGATTGCTACACTATGAGAAACGTCCCAGAAAGACCCTACAAGTGCAAATACTGTCCCAGTTCTACATTTTCCACTCTGAGCAACCTGAGGAAGCATATTGCGTCGAAGCACCCGAACTGCAGTATTCCTGGCTTAAGAGGTAGTGCCAAAAGGAGCAGCTGTGATGGTTATGAAAGTCAACAAAGCTCCACAGAAGATGCCGAATCTGATGTGGCTGCAGCAGAGATCAAATTGAGTCAAGAAGATGTCAATGCAACCAAAGCTATCGACAACTTGCCTAAAGTAGGTGCTGAGTCGGCAACGCTCAGACCTCTCCCATCGCTCAATCCAGAAACGTCAGTCTCCTCCTCTGATCTACCATTCAAGTGTCATCTGTGTGACAACAGCTTTGGAGAACGCCAAGACGCCTTGGATCACATTAGAGAAACACATGAATCCGAGTATGCGCTGCTTGCGATGAAAGGGGCCCTTGACTCCGGCACCGCCGATGAAGCATTTCATCTGGACGATCCCAATGGCGAGGAAAGTCTTGAACAATTGCGAGGAAAATTTCCGGACTATGCCAACCGGAAGGTAATGTGCGCATTCTGCCTGCGTCGTTTCTGGTCGGCTGAAGATCTACGCAGACACATGCGTACGCACACGGGCGAGCGGCCTTTCTCCTGTGACATTTGCCGGCGCCGGTTCACGCTGAAGCACAGCATGCTGCGGCACCGCAAGAAGCACTCGCTGCAAACCAACGCCACCAGCAGCCACAGCGACGACGAAGCCAACAATAACAACACCCCCACCCCACTCGCTCACCCCAAGCCCAACGAGGAATTCGATCTGATCAGCAATCTGCTCGGAATCGGAGACAAGTCCATTGTTGATGAAATGATAAGAACAAAATCAGCTGAAGATGCTGCAAAACTTCTAGGAGTACTGAAGCACTAG
Protein Sequence: MIDMASGTIPCQMTVSLMRDQSDPKASSLDVTDETAGRSKKMTSFEKQPKLSDTKVNEKADDNYTKEQDTHEKNDDWRTKNGYTKASDNIERNETENLEDGSSSKMNIDKQTKSSDNESVEADNEVSRFMCPICNVLLTSQHEFTLHIRSHNNNNGDASTNHTSGEDECLLAGGKGYGCCICGKVLSSSSSLDRHVLVHSGERPFKCSICRVSFTTNGNMHRHMRTHNVTGSGKAINNLSSIKMNGGNPLESSYESDCGSDSSGTGSTLSPCLKRRKTSNNSFRGGAKTFTDSNSMLQRDLESKVETNFNPVSTPLTNKRKNSDIDSSLDDSGKKEQHNKLCSNTVVRNNFSVTSTVSNSRRRSSKNSSSSDGEERKTVSKFKCVVCKREDFSSLNLLETHLEAKHPEFKACCEPCNLEFKNHRALNLHRFMKHPDHESPTNGRDIVGFDDLTFVDFSSEKFPYIAKTVCEKSLHKASSTQLKFQCEICQRAFPLASALTIHQQSCLQAANEKTKTGCALENELNCRKNHHKSRGNMLTTDASSEDESSDVFTPYSKISSYDHHTEMSESEESDEQRRDSFFARLDLRNKLTPDYLSPTSDEELMNNSTKNISLQPTSTQHPHMNYKLNCNIAQNLTRNLKTLCGSNMSVLSEVRDLADIQSIISVTSAGNTMLPDLSKSPQPSTTITDVTPPDSASREEEEQQDCFAAEFRKMKLRGEFPCRLCTAVFPNLRALKGHNRVHLVSSSSGANLPYRCNMCPHFSNDKSALIRHMRTHNGDRPYECSICHYAFTTKANCERHLRNRHAKMTREDVKKSIIYHPSEDPTNDINGTSLLFKPELNCNDIKRTLFSDRLKENIVSSNESLSIDLDKEAMKTFPASNTDLSNNLSMVSTQTAEAIRPNKKSQNTITSNLLSRLSSNIGVKFDQDDHNITQEEYHNEVGIVNLTRDMHNKRRKSLDVATMTSEEDVNNDEDDEENDIVDMSDLNNKNEDKPLDLSMDALDLSRKRQDFIKHDSMESKKSDFRGFGVSEDDASSTDYDNHPADLPQDLSKKKVVEVTDDFEENDHNDFEDEDMIDVTGDGEKENDSMPKQMKQTTTEVDESQHLHSGLENAELLNFPKLNLSQFYAAAAAAGNVGTALPSTFFLNNNTTNSNNNNNNAFSPFAGAANPAAAAALFSCSPYFLAPHPGVMFPRNLTQDYMLEVKERIHKDLMRGLQLSSGGSLILDQIAMATAADRIQTLHNQALMEYNRRMESSVPLNLIDALNQNFVGKPPDANENNNNNYNNNKNKTSPMQQTVINPHATPSTSPLLRNVASPNTSPSPMGLVDKSIPKFNSGFSLARKNVLVPGMNNTVVKSPRAPSSTNNNVSSDNMSPSSASSVKMVIKNGVLIPKQKQRRYRTERPFSCEHCSARFTLRSNMERHIKQQHPQYWTQRQRSGHGAGRRAQSRNNLQPTGSLNSQLSYFPHLAVASGSDNETSRPCSPREDPIKETSVLMDVGRTISDEVKHAIALQLKSKNPIIQDSKESIINREEKLVDQKPTNEIEEDDNVSYAEEETSERLVIDEERIVTDTENEDVEMKNEAGAEEEKDSQAPQSKYLPSAKKETDKIPFQKDENLNIDLASVSRLLDNASTQTFKEYFHNDDDQIRDENSEEDEEGLVAANSEGNNSGSDENKSESDTAGSSMGNRQGEKKKSAYSLAPNRVSCPYCSRKFPWSSSLRRHVLTHTGQKPFKCSHCSLLFTTKSNCDRHLLRKHGNNNSSNTNNNNSITNDSNTTGDEVQGRILENGVSEDCYTMRNVPERPYKCKYCPSSTFSTLSNLRKHIASKHPNCSIPGLRGSAKRSSCDGYESQQSSTEDAESDVAAAEIKLSQEDVNATKAIDNLPKVGAESATLRPLPSLNPETSVSSSDLPFKCHLCDNSFGERQDALDHIRETHESEYALLAMKGALDSGTADEAFHLDDPNGEESLEQLRGKFPDYANRKVMCAFCLRRFWSAEDLRRHMRTHTGERPFSCDICRRRFTLKHSMLRHRKKHSLQTNATSSHSDDEANNNNTPTPLAHPKPNEEFDLISNLLGIGDKSIVDEMIRTKSAEDAAKLLGVLKH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00857944;
90% Identity: iTF_00857944;
80% Identity: -