Lstr029613.1
Basic Information
- Insect
- Laodelphax striatellus
- Gene Symbol
- ZNF219
- Assembly
- GCA_014465815.1
- Location
- WOVE01037074.1:29362-38019[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 7.3e-05 0.0087 17.8 1.2 2 23 688 709 688 709 0.97 2 12 1.9e-06 0.00023 22.8 1.2 1 23 715 737 715 737 0.98 3 12 2.7e-05 0.0032 19.1 4.4 1 23 743 765 743 765 0.99 4 12 4e-05 0.0047 18.6 1.2 2 23 772 793 771 793 0.96 5 12 0.00011 0.013 17.2 0.2 1 20 799 818 799 820 0.95 6 12 0.0046 0.55 12.1 2.1 1 23 826 849 826 849 0.94 7 12 1.8e-05 0.0022 19.7 1.4 3 23 857 877 856 877 0.97 8 12 1.7e-05 0.0021 19.7 1.6 1 23 883 905 883 905 0.98 9 12 0.00026 0.031 16.0 4.5 1 23 911 933 911 933 0.98 10 12 3.4e-06 0.00041 22.0 1.2 1 23 939 961 939 961 0.98 11 12 0.85 1e+02 5.0 1.7 2 23 969 987 968 987 0.93 12 12 0.00047 0.056 15.2 0.2 1 21 993 1013 993 1014 0.95
Sequence Information
- Coding Sequence
- ATGCCTCTTGAATCATTGCTCAATCCCAAAGATCTACCAAGATCTGAGAGCTCCAGGTACTTGGTTGCTTCATATAGTAGTCGTCAATTACAAAGTGATAAAGTACAAGCCATGGAAATAGTTACCACACCTAATAACACCAACATGTCATCGTCTAACCTTACACAAGTGAATACTTCTATGAGCGTTGGTAACATTCAACCTACAGGGCAAACTAGTGCTGGCAGTAATGTATTCAACGGATTCTACAGCTCAGGATTCAACTCATCTATCAACAATTTGGAGGCCAGCCTTCAGTGGTTATCTGAAACTAGAGTTCCCAACAATTCCTTGATGACTGACAAAAACATGAACTCTAATGCAGTGCCATCGCATTCCTGTTGTGTGAATCGAATAGACAATTTAGGAATGTGCTCACCACTTCCTGGCGAAACTTACAGATCGAGTTGTCGTGATGGAAATTTTCAAACAAGACCATCCAGTCTATCTGTGAATGTGATGGATTCAGTGCAAAGCTGGTTCAACCTTCAACCGATCCAATCAAATCAGCAATACAATGGTAAATACCCTGATCAAAACTTGAACTGTACCCAAATGAGCTTGCCAATTCTTGAACAAGCAGATTTAAAACAGGCTGATATCAATATTACAATGCCAGATAATTATTTTGAACCTCATTTGAGCAGTAATGCTAATAAATCAATTGGACCGACTTTGAATGATATCAATGGTAAGCTCCCCGACGTAACCGATGTGCAATCTACTAGTATGAAAGTTCAGAACAACAATTTTCAGCCTGCTATGCTGCCTAGGGAATGGAAACAAACATCCAACTTACAAACTAACTATGTATCCAGCCCAACTTTTTTCAACCCCATCAGTGATTCTCCAGATCATTTCATCTACTCCCTACCTCCACCGACAAGTTCCTATTGTATGCCTACAACTGACAATATTGCCAGCTCTTCAAATAAGCAGCAGAATTGTTATCAACAGCACGATAAGCATCAGAATTCTGTTCCACAGTTGAATTGTCGACCAAACTACATAGATCAAACTGCACAATTGAAAGTTCTCAGTTTACCCCCCATACAACAAACAACCGATAGAAGCGAAAAGACATTTTACGAGAAAACAGTCACAATTGATGGTGTTATGAATAGCAGTGATGTCATGAAAACCATCCAGTCGTCCGCATCTACTCAGAAAGACAACGAGATGAAAATTGATTCATCGAGGAAATTCCCTGACTCTCTTGCCAACTACACACTACCCTATTTGCCAGATGTTAGCGCTTCTAATGAGACAATAGTTCATAGTGGCATCAGTCAAAAATTACCTGAACTCTCAAAAACAATCGAACAGAATTTGAACGACGATAGCTCAAGTGGTTCAGATGAGAGTAACATCATTGTTGAGGAATCGGACGAAACGGAAGAAATGGAAAGCGTTACATCCATAGAAGAGATGAAAAAGACTCTACTGTCGTCAGTTGAGTTACGGTGTCTGGTGTGCAATGTGAAGTCGTCGCAAAAAACGCCGGCCACCCAGTTCATCCACATGAACGACTCGTTTCCATTAACGTCCGCATCGCGCACTCCAGTCGCCTCCAAACTCATTCAAATCATTCCCGCCGATCTGAAGCATTTCCTCAAGCTACACAACAGCTTCATGTGCCGACGCTGCCTCAACCTCATCGAAACTGTTGAGGTGCTTGAGGTGAAACTAACCTCAGTGAAGCAGACACTCAGTGAGAACTTCAGTAAGACCATTCAGTGCTTTCTGCCGGCGACACCTATCATTGAGATCGAAGATGGGAAAGCGGAGATTGTCGACAAGGAAATTATTAAAACGATTGAGAAGTCTGGTTTGGAAGGAGCACTGGTCAACTTCACTGAAACTACGATTTATCTTGGTTTACAGCCGGCAAAAAAGCCTTGCGTAACGGTGGAGAGTTTGGAAGAAGAACAAGAAGAAGTAGACGATGTCGATGATGTAATAAATGAAGAGGACGACCCGACTGAAGAGGACGGGGAGGCTGATGCCGATGGAGAGAAGAGGACCTGCGATATTTGTGGTAAAACGTTGTCAAGCACAAAAACATTCAAAAGACACATGGAAATCCATACGGGTGCGTTCAGTTTTTACTGTGAAACTTGTGGCAAGGGCTTCAACAAGAAATCATCTCTAGAAACTCATCTCCTGACGCATAGTGGTAACAATCGGTTTCAGTGTGAGAAGTGCGGTCAGACGTATAGTCAAAAACATCGACTAGAAACTCATCTGCGTAAGCATGCGGCTGATTTCAGTCTGCATTGTGATGTTTGTGGAAAGGGGTTTGTACAGAAGAGTTTACTTGATAAGCATAAACTAACACATACTGATTACCGTCCGTTTGTATGTGAACGATGTGGTTTGACATTTTCAAAAAAATCCGGATTAAAATCTCATCTCGACGTGTGTGAAAAGAAAGAATTCCCGTGTGATTGTTGCTCACAGGTGTTCACGTCACAGACAAATCTCAAACAACACAAACTGGTTGAACACTGTGACGAGCCGCCAGCTTGCTGTGAGATCTGCGGTAAAGTGTTCGCACAACGCAAAGATTTGAAACCGCACATGCGTTCCCACTCAGACGACAAACCGTTCCGCTGCCAGATCTGCGACAAATCGTACAAAACACGAGGTGACCTAAACTATCATTCCAAAATCCACAACGTCGACAAACTATTCAAGTGTTCAATCTGTGATAAATGCTTCTCCCGTAAACAGGTCTACGACGATCACATGTCAAAGCATGCGGGGAATCGTAACTACAAGTGTACAGAGTGCGATAAGGCGTTCTTCGAGAAAGGCAAACTACAGAAACATATGTCGATTCATAATGGTGGTGTAAAACGTAAGACTTGTCCCGTTTGCAATAAGGAAGTGCAACATATGAATGTTCATATGCGGACACATTCTGGGGAAAAGCCGTACGAGTGTAAGTTTTGTGGCCTTGCCTTCAGTATAAATCGGACGTTGATGAGGCACATACAAAGATGA
- Protein Sequence
- MPLESLLNPKDLPRSESSRYLVASYSSRQLQSDKVQAMEIVTTPNNTNMSSSNLTQVNTSMSVGNIQPTGQTSAGSNVFNGFYSSGFNSSINNLEASLQWLSETRVPNNSLMTDKNMNSNAVPSHSCCVNRIDNLGMCSPLPGETYRSSCRDGNFQTRPSSLSVNVMDSVQSWFNLQPIQSNQQYNGKYPDQNLNCTQMSLPILEQADLKQADINITMPDNYFEPHLSSNANKSIGPTLNDINGKLPDVTDVQSTSMKVQNNNFQPAMLPREWKQTSNLQTNYVSSPTFFNPISDSPDHFIYSLPPPTSSYCMPTTDNIASSSNKQQNCYQQHDKHQNSVPQLNCRPNYIDQTAQLKVLSLPPIQQTTDRSEKTFYEKTVTIDGVMNSSDVMKTIQSSASTQKDNEMKIDSSRKFPDSLANYTLPYLPDVSASNETIVHSGISQKLPELSKTIEQNLNDDSSSGSDESNIIVEESDETEEMESVTSIEEMKKTLLSSVELRCLVCNVKSSQKTPATQFIHMNDSFPLTSASRTPVASKLIQIIPADLKHFLKLHNSFMCRRCLNLIETVEVLEVKLTSVKQTLSENFSKTIQCFLPATPIIEIEDGKAEIVDKEIIKTIEKSGLEGALVNFTETTIYLGLQPAKKPCVTVESLEEEQEEVDDVDDVINEEDDPTEEDGEADADGEKRTCDICGKTLSSTKTFKRHMEIHTGAFSFYCETCGKGFNKKSSLETHLLTHSGNNRFQCEKCGQTYSQKHRLETHLRKHAADFSLHCDVCGKGFVQKSLLDKHKLTHTDYRPFVCERCGLTFSKKSGLKSHLDVCEKKEFPCDCCSQVFTSQTNLKQHKLVEHCDEPPACCEICGKVFAQRKDLKPHMRSHSDDKPFRCQICDKSYKTRGDLNYHSKIHNVDKLFKCSICDKCFSRKQVYDDHMSKHAGNRNYKCTECDKAFFEKGKLQKHMSIHNGGVKRKTCPVCNKEVQHMNVHMRTHSGEKPYECKFCGLAFSINRTLMRHIQR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00365986;
- 90% Identity
- -
- 80% Identity
- -