Lstr035708.1
Basic Information
- Insect
- Laodelphax striatellus
- Gene Symbol
- -
- Assembly
- GCA_014465815.1
- Location
- WOVE01037062.1:54161-64209[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 8.2e-05 0.0097 17.6 1.8 1 23 161 183 161 183 0.97 2 28 2.7e-05 0.0033 19.1 2.9 1 23 193 215 193 215 0.98 3 28 0.0026 0.31 12.9 0.7 1 23 241 264 241 264 0.95 4 28 0.017 2 10.3 2.8 2 23 271 293 270 293 0.95 5 28 0.48 57 5.8 0.1 3 23 393 414 391 414 0.91 6 28 0.0031 0.37 12.6 0.8 1 23 444 467 444 467 0.95 7 28 0.66 79 5.3 1.6 3 23 475 496 473 496 0.93 8 28 0.00084 0.1 14.4 0.6 1 23 508 530 508 530 0.98 9 28 0.0021 0.25 13.2 0.2 2 23 585 607 584 607 0.94 10 28 2.7 3.3e+02 3.4 3.8 1 23 626 649 626 649 0.97 11 28 0.048 5.7 8.9 0.6 3 23 657 679 656 680 0.91 12 28 0.022 2.6 10.0 0.1 2 23 689 711 689 711 0.96 13 28 0.039 4.6 9.2 0.2 1 23 717 740 717 740 0.95 14 28 0.00037 0.044 15.5 2.9 1 23 748 770 748 770 0.97 15 28 0.00023 0.027 16.2 0.5 2 23 832 854 831 854 0.95 16 28 0.027 3.2 9.7 2.5 2 23 861 882 860 883 0.94 17 28 0.024 2.9 9.8 5.5 1 21 905 925 905 926 0.94 18 28 0.00016 0.019 16.7 0.4 2 23 940 962 939 962 0.95 19 28 7.1 8.4e+02 2.1 1.2 2 23 996 1019 995 1019 0.92 20 28 0.034 4 9.4 1.4 2 23 1027 1049 1027 1049 0.97 21 28 0.82 97 5.0 1.6 3 23 1057 1078 1055 1078 0.94 22 28 0.00038 0.045 15.5 0.2 3 23 1088 1108 1087 1108 0.98 23 28 0.029 3.4 9.6 0.7 1 23 1113 1135 1113 1135 0.92 24 28 0.0081 0.96 11.3 1.6 6 23 1270 1288 1265 1288 0.91 25 28 0.026 3.1 9.7 5.7 2 23 1394 1416 1393 1416 0.95 26 28 0.23 27 6.8 0.3 2 23 1423 1445 1422 1445 0.94 27 28 1.4 1.7e+02 4.3 2.0 1 23 1456 1478 1456 1478 0.93 28 28 0.0096 1.1 11.1 0.7 1 23 1490 1513 1490 1513 0.96
Sequence Information
- Coding Sequence
- ATGGCTGAAATTGAAGAAGATAAATTTGATGAGCTTTGTAGGCTGTGTGCATCCTACGATGCAGTTCAAATGGACATTTTCGGCGAGAAGGGTAGAGAGAGAAAGATCATCGAAAAAATTCACACATGCCTTCCGTTCCAGGTCAAGGAGAGAGACCTACTGCCTAAATCAATCTGTTACCGTTGTATGTATAATTTGGAAAACTTCTTCGATTTCCGTAAAGGCTGTGTGGATGCTGTTACAAGACTGGAAAAATTTGTGGAAAACTCCAAGCGGAATAAGCAGTTCGTTAACGGAGAATGTATGACATCGACTGCGACCGATGAGGATGAAGAACCCAATCCAGCCGATTTTCTGGAAGCTTGCTTGGCTGGCGAATCAGTGGGCAATGGAGTGCAGACCGACGTGAGAGAGATGCCGTCAACGATTGTTGTCGACTTCGACTGCCTGCCGCAGCGCATCGCGACGCCGCCCGACGACTTCACGTGTCAGACTTGCGGACGCACGTTCAATTCGCGCGGCGCGCTCACACAGCACTCCAAGTACCACACCGGCGAGTCGGACCTGACGCAAGTGTACACGTGTCATGTGTGCGAGAAGGCGTTCTCCAGCAAAGGACACCTCGCTTCTCACTCGAAGGTTCACATCGGCGACTTGGCTGATCGACCCACACCCGTCGAAACCCCCACCAACACCGCCAACATTGGCGCCCTCCGACCCTTCAAGTGCGACCTCTGCGAAAAGTCCTACTCAATGGCCAAACACCTCTGGGGACATGTCAGTGTCAGTCACAAGGGCGACCCCAAGGTCACCTGTCACTTCTGCAGTCGCACCTTCTCAACCATCGCCAACCTAGACGATCACAAAAAGTACAAACACAACATAGAACTCGACACTAAAGACATTAAACCTGAAAAAGTTGACGTCAAACTCGATACACGGGATGATGATGATATTGTGAAAATGGAGGAGAATAATTCGAGTCATTCTGTTGTCGAGGAGCAGGGTGGTAGTCGGAGAAAGAGTTCCAAACCAAGAAAAATCAAACGAGAAGTTATCAATCATGCTGATATCGAAATCAAGGATGAACCACTAGACCTGGCAACTACTAGTTCGACAGCGGCAGTAACCGAGGAGGAGTCATCTAGAAGTGAAACAACGGACAAGTCGTTGGCGTGTCTCTTCTGTGAAGGCGTGTTCCCCTCCCGCGCACTCCTCAACCAACACCTACTCGACAAACATGAGATCAACCCAGAGGACATCACAACATCTCCCCCGCCTCACGAAGATATCAAAATGGCTGAAAACATGCTGGAAGCTGAAACTGTTTTCTGTTGTGAGATTTGTGTGAGAGATTTCAACGACAGAGCCAGTCTCTGGCTGCATATGCTGTATTCGCATCGTGAGGAAGCAGCTACAGCTTGCGGCATATGTCTGCGTGTGTGCTCGGATAATATGAGTCTGATGGAGCATGTCTACAGTTGTCATCCGAAAGATAGTTTAACAGCTGATCAGAAGCGGTACAGTTGTCAGATATGTGGCCGCCAGCTCGATTCGAAAAAGAAGCTGCTCACTCACGTCAGGATTCATAATTTGTATGACGACACTGGTCAAATTTTGGATCCAGAATCGGTGATTGTGTTGAATAATAAGAATCGACAGATGCCGCCAGCCAACAGTCAAGCGAAAGAGAGAGATAGCCAGTTGGAAATGCAGCACGAAGTGTTCACCGAGGAAGGCCAGTTGATTATGAGCTGTGAAATCTGTTACAAAGTGTTTCCCAACGAAGAGAAGCTAGTCAAGCACAAACAAAACGCTCACAGAAATTCGCAGGGCCCCAACAGTATTAACAGTTCCACCACCTATTTTCTGTACTTTTCGTGCGAGTTGTGTGGCTTGGCGCATTCGACAAGGACGGAAAGATGGCGCCACATGTTCACCTGTCATGCCGACGAGCCCACGCTGCTGTGTGACCAGCAGAAGTGCGGCAAAGTGTTTCCGACGCGAGCACTCAGAGCCGAACATGTGTCCACACATCACAGCCTCCAGGGAGACACGCCCAACACGTGCGAGATATGTGGAAAGTTGTGGGCCACTCGAGTCAACTACTGGAAACATATGATGAGCGTGCATGCTGATTGCTTGCCGTTCATATGTGGCGTTTGTCTGAAGATATTCTGTTCAGTGCCTGATTTATCTGCTCACGTGAGAGAAAAGCATTGGCCGTTGTCGGGCAGTGATTACTGCTGTGACATATGCGGCCGGCCTTACCCCAACAAATCAAAAATGTTTCGTCATCGAAAACTGCACGTTCTACCAGAAGCTGAAGGAGGCCTACCAGCTGGCCACGAACTGGAAGATATCCCCCCTGCTAACGAGTCTCGTCCTTCTATAGAAGTATTCGATCAACTCACCTGTAGCCTTTGTCCCGATGAAGAGTTTCTCTGTTTAGAAGATCTGTCCAAACACCGTAAAACAGCTCACAATCTAGTGCCTTGCGACCTGTGTCCGAAATTCTACGGCCGGTCGTCCCATCTCTGGAAGCACGTCAACAAAATCCACAAAAACCACCCGGACATCACATGCAGTGTATGCTTTCGCACGTCAGCGTCACGCAATCACCTCGCCAACCACATTGCAAAACACCATCGCCACGAAGTGCTCTGCCAGAACTATATCGATATCTGTGAACTGTCCAACGAGGAAGCTGTACACAACTGTGTCAAATGCAACAAGGTGTTCAGGAAACATTTATTGTTGAAAAAACACATGAAACATTGTACCGGACCCCCTAATCAGTCGATATCTGGGCCATCTCCTTGCGAAAGGTGCTCGAAAGTATTCGACTCGCCGATACAACTTCGTAAACATCTCAGGAACTCACATCTACATTTCAGGTGTGAACTGTGTGAAGACGTAGCTCACGACTCACGCATCGAGCTCATGGATCACATAAAAGAAGCTCACGCTGGCGATCCTAGTTTGTCATGCGATTATAAAGGCTGTGGAATGATGTTGCGTTGTAAGTCCGATGTAGCCAAGCATAGAAGGGAACACAGACAGGGTAGGCCGCCTCCCACTTGTACTTTTTGTGGCGAATTGACTCCGAATAAAATGAAGTTGAGAAATCATCTGAAAACACAACATCCCCTTCTCACCAAGCATCTCTGTTCAATTTGTTTAGTTACTATGAAAGATTTCGACGAACTTAGAAAACACGTTCGTTCAAAGCATAAATCATCTCTTGGCAAAACAAATATTTGTCCGATTTGTGTACGAAGTTACTCCAACAAAAGCAAAGTTCTGGTGCATATTCGTTCGCATGGCGAAGGTTTCTTCCCCTGTGAAATATGTGTGAAAGTGTTTAGGGACCCTGAAAAGCACAAACGACATACAGACGCACATTTTGATGAGAATTCTGAAGAATTGGAAGCTGAGGAGGAAGAAGAAGAGGAAGCGGAGGATGCAGCTAATCAGGAACAAGAAGAGGAGGAAGGAGATTGTGATGATGAGGATGAAGCGGTGAAAGATGGCAAAGAGAAAAGTGTGAAGAAAAAGAAGGCGAGGGAAGATGACGATGAAGAAGAGGATGAAGAGGAGGAGGAGGAGGAGGAAGAAGATGGAGAGGAGGAGGATGAAGAGACTAAGACTGAAGATGTTGAAAGTGTGATAACAAAGAGAACGTCAGATGATGAGGATGCTGATGAGAAAGAAGACGTAAGCAGTAGTCAGATCGAAATTGAGGACGATGATACTAATGAGACTGTACCTGTGAAACGTCAGAGGCGAACACATCCGTGCATAGCTTGTTCGAAAACATTCACAAATTCGACCAGCTTTCTGCGTCACATGAAAGCCGACCACGTTGAACTGATCTGTGCTTGCGGCAAGATGAGCGAAAACATTCAGTCTCACAACAACCACTTGAAGAAGTGCATCACTGGCAAAAAGAAGGAGAGCGGCAAAGCGCAAGTGGAAGAGAAAAGGACACCGAATAGGAGAAGTCTGGAGAGAAAGTTTTTGAATTCAGATAGTAAAGGAATGACGAACTCGGCTGCGACAACCAAAGACAACAATAAGTCGTCAACAGATAAGCCAGCGAATCCTGTTGTCAACACCAGTAATAGTTCAGGGAAACGAGAAGTAAGGCGAGTGTATAAATCGGACGACGGCCTCTGTTCGTGTGAGTTGTGTAAGAAACAATTTGAAGCCAAACGTCATCTATGGCAGCATCTGAGGAGGTTTCACCTCAAGGAAGCAGCCACATCGTGTGGTGTTTGCTTGAAAGTCTGTAAAGATTACGAGTCGTTAGATTCTCACCTCGCAATAGAGCATACAAATAATTTCGAAGGGGAAGGTAAAAACTTTACGTGTCGAGTTTGTGGCAGATATCACAATTCCAGATCGAAATTGGAACAGCATTCAGTTATACATCCCGGACAGGAAATGAGAACTCACGCAGCGCTACACTCTTGCCGGCTGTGTCCAAACATGTTCAATTCGGCCACTTCCCTAGCCGTGCACCAGTCGACTGATCACAAGCAGAAATCCGATAAAGCTGAGGGCGAAGAGAAAGATTCCAAGGATTCAACAAAATCGTCGAAAGATTCAAAAGTGAACAAGTTGTCTCCGTTGTTGAAGCAAGCGCAAAGAAGGCCTGATAAGAGTGCCTGGTCCAGTATTCACAAGGAAGCTGTCAACAGATCTAGTGAACGTAACCGTAACCTATCGAATAATTTCAAAACTAGCTCCCCCACCACGAACAAACCGAACGACGTCAAGTTCAACAAAATACAAAACAAATCTAACAAACTGTTCACTGGAAATGATAATTGTGTTCAGAGCGGTGATAACGATGAAGACGAAGATGTGATTGTGTTGAGTGACGAGAATAACGCGAATAGCGGCGCTGCTTTCAACAATAGTGAGGTGAAATTTGTCGAGGATAATGTGAATCTGTCTGAGGAAAGTTCAGCGTCCTCAGGTGAGGATGAGGATGATGAAGCTGTCAGATCTGTTGCCGATCTCGAAAAAGATATGTCAGCAACCGCTGAAGTGTAA
- Protein Sequence
- MAEIEEDKFDELCRLCASYDAVQMDIFGEKGRERKIIEKIHTCLPFQVKERDLLPKSICYRCMYNLENFFDFRKGCVDAVTRLEKFVENSKRNKQFVNGECMTSTATDEDEEPNPADFLEACLAGESVGNGVQTDVREMPSTIVVDFDCLPQRIATPPDDFTCQTCGRTFNSRGALTQHSKYHTGESDLTQVYTCHVCEKAFSSKGHLASHSKVHIGDLADRPTPVETPTNTANIGALRPFKCDLCEKSYSMAKHLWGHVSVSHKGDPKVTCHFCSRTFSTIANLDDHKKYKHNIELDTKDIKPEKVDVKLDTRDDDDIVKMEENNSSHSVVEEQGGSRRKSSKPRKIKREVINHADIEIKDEPLDLATTSSTAAVTEEESSRSETTDKSLACLFCEGVFPSRALLNQHLLDKHEINPEDITTSPPPHEDIKMAENMLEAETVFCCEICVRDFNDRASLWLHMLYSHREEAATACGICLRVCSDNMSLMEHVYSCHPKDSLTADQKRYSCQICGRQLDSKKKLLTHVRIHNLYDDTGQILDPESVIVLNNKNRQMPPANSQAKERDSQLEMQHEVFTEEGQLIMSCEICYKVFPNEEKLVKHKQNAHRNSQGPNSINSSTTYFLYFSCELCGLAHSTRTERWRHMFTCHADEPTLLCDQQKCGKVFPTRALRAEHVSTHHSLQGDTPNTCEICGKLWATRVNYWKHMMSVHADCLPFICGVCLKIFCSVPDLSAHVREKHWPLSGSDYCCDICGRPYPNKSKMFRHRKLHVLPEAEGGLPAGHELEDIPPANESRPSIEVFDQLTCSLCPDEEFLCLEDLSKHRKTAHNLVPCDLCPKFYGRSSHLWKHVNKIHKNHPDITCSVCFRTSASRNHLANHIAKHHRHEVLCQNYIDICELSNEEAVHNCVKCNKVFRKHLLLKKHMKHCTGPPNQSISGPSPCERCSKVFDSPIQLRKHLRNSHLHFRCELCEDVAHDSRIELMDHIKEAHAGDPSLSCDYKGCGMMLRCKSDVAKHRREHRQGRPPPTCTFCGELTPNKMKLRNHLKTQHPLLTKHLCSICLVTMKDFDELRKHVRSKHKSSLGKTNICPICVRSYSNKSKVLVHIRSHGEGFFPCEICVKVFRDPEKHKRHTDAHFDENSEELEAEEEEEEEAEDAANQEQEEEEGDCDDEDEAVKDGKEKSVKKKKAREDDDEEEDEEEEEEEEEDGEEEDEETKTEDVESVITKRTSDDEDADEKEDVSSSQIEIEDDDTNETVPVKRQRRTHPCIACSKTFTNSTSFLRHMKADHVELICACGKMSENIQSHNNHLKKCITGKKKESGKAQVEEKRTPNRRSLERKFLNSDSKGMTNSAATTKDNNKSSTDKPANPVVNTSNSSGKREVRRVYKSDDGLCSCELCKKQFEAKRHLWQHLRRFHLKEAATSCGVCLKVCKDYESLDSHLAIEHTNNFEGEGKNFTCRVCGRYHNSRSKLEQHSVIHPGQEMRTHAALHSCRLCPNMFNSATSLAVHQSTDHKQKSDKAEGEEKDSKDSTKSSKDSKVNKLSPLLKQAQRRPDKSAWSSIHKEAVNRSSERNRNLSNNFKTSSPTTNKPNDVKFNKIQNKSNKLFTGNDNCVQSGDNDEDEDVIVLSDENNANSGAAFNNSEVKFVEDNVNLSEESSASSGEDEDDEAVRSVADLEKDMSATAEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00365987;
- 90% Identity
- -
- 80% Identity
- -