Lstr022966.1
Basic Information
- Insect
- Laodelphax striatellus
- Gene Symbol
- -
- Assembly
- GCA_014465815.1
- Location
- CM025324.1:20698528-20714300[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 4.1 4.8e+02 2.8 0.9 2 23 460 481 459 481 0.93 2 18 0.0074 0.88 11.5 0.4 1 23 487 509 487 509 0.96 3 18 0.016 1.9 10.4 0.4 1 21 528 548 528 549 0.93 4 18 0.15 18 7.3 4.2 2 23 558 579 558 579 0.94 5 18 0.00091 0.11 14.3 0.4 2 23 586 608 586 608 0.94 6 18 1.3e-05 0.0015 20.2 4.6 1 23 614 636 614 636 0.96 7 18 6.4e-07 7.6e-05 24.3 2.6 1 23 645 668 645 668 0.95 8 18 0.0031 0.37 12.6 0.9 1 23 678 700 678 701 0.95 9 18 1.3e-05 0.0015 20.2 1.3 1 23 722 744 722 744 0.97 10 18 0.072 8.5 8.4 0.6 1 20 750 769 750 772 0.92 11 18 0.82 97 5.0 3.2 1 23 793 815 793 815 0.96 12 18 0.0081 0.96 11.3 1.0 1 23 821 843 821 843 0.97 13 18 5.1e-06 0.00061 21.4 0.9 1 23 859 881 859 881 0.99 14 18 1.6e-06 0.00019 23.0 0.3 1 23 887 909 887 909 0.98 15 18 0.0048 0.57 12.1 2.2 1 23 915 937 915 937 0.98 16 18 0.0016 0.19 13.5 3.0 1 23 943 965 943 965 0.98 17 18 1.2e-05 0.0015 20.2 1.5 1 23 971 993 971 993 0.99 18 18 2.3e-05 0.0027 19.4 0.6 2 23 1000 1022 1000 1022 0.96
Sequence Information
- Coding Sequence
- ATGGTTCTTACTTCAGGGGAAGATGATAATGTCAAGCTGGTTCTGAAGAATGTTGTCGGTGAGATGGTGACGATGGTCGTACAAAGCGATGAAACATTTCAAGAGCTTCAGGAAAGAGTATTGCTTGAAACTGGAATAACTTTGGATATACATGACTTCACAATTCAGGGAAAAAATATTTCCAACGAAGACATAGTGACGGATTATTTTGCAAATGCTCAAAATGATTCAGTCGAAGAGAAGCCTATTATTACAGAAGATACAAAATGTGCCGTACCTGGTTGTTCAAATACAAAATTGAACTGTCCCGATAAAGCGTTTTTCCAATTCCCTTTGGAAGAAGTCAGATGTCACCAGTGGGCGTTGTACTGCCAAAAGCTGAGTGAGCAGTCAGGAAAGCACCGAATCCAGTTGAATATGAGTTCGGCGATCTGCGCAGATCACTTCAGGAGAGATCAATTCGTAAAGAACACCACCACTCTGTTAAAAAGAACGGCCGTTCCTTGTATTCGACCTGAACTGCCTCCCGGATGTGATGCCAACACGCCGAGGCGAAAATCGTTAGCACTATCGCTGTCTCCTAGTATTTCTTTGAAAAGTGATAAGATTTTCGAGGATTTATTCTCAAATAACTTATCTACTCTCGCTCCTGGGTCTAGCGTTCTGTGTCGTTTGTGTGCCAATCCATCCCCAGATATGCTGTTCATTTTCGATGACATAGGCTATAAGCTGAGTATTCTGGAGAAGATAAATAATTGTCTTCCTGTTGTGGTTCGTAACACAGACCCTTTGCCAAAGCAGATCTGTCGTCTTTGTTATGAGAAATTGACAAGCTTCAACGATATGATTGAGTCTTCTCTAAAAGCTGAATCTAAATTGAAAAGTCTAGTGAAGGACAATCATTTTCAGCTCGATGAAACACAAAATTCTGATGCAGAAAAGACTGGAGAAGGAGAAGAAGCAGCGAATAACACAGAAGAAAACATCGAAGAAGAAAGGAATTTCTCAATTAGTTCAGAAAAGAATGAGAAGAACAAACACTACTGTTGTCCTTTGTGCAGTTGCGGAAAAATGGTGTTGAAGAGTGGCATTTATAGAGCGCGCACGCCAGCTTGCACGAAGCAGGAGGCGACTGATGGCGAGGCTGAGGCAGAAGAAGGCGGAGAGCCTCGATCCGAAGTGGAGGAGGAGAATGAAGAGGCCAGCAGCGAGCAGAAGGCCTTCTGGAATGGACAGGCTCTGCCCGAACTCGAAATGGAAAGCCTCTATCCGGACTGCATTGTCGGAATGGACTTGGATGCCATACCTGAGGAGTCATGGGAAAGCGAAACATCCTTCAAACAAGAACAAACCGTTTCCAATAACAAAAATGACATTTACTGCCGTCTATGCAAAATGGAGTTCACCAACATCAACGCTGTCTTGGAGCATTCACATACTCATGCTGACGACGATTCTTTCCCTTGTGGCTTTTGTGACAGCTATTTCCCGACTAGAAGTGAACTGGAGCAGCACTTTCAAGAGCACAGAATCATGAAGAAGAAAATCGTTTCGAGCGATGTCTACGAACGCGGCCAGATGTTCGCTTGTGACTTGTGTGGTGCTCCCTTTAAAACGGAGGCGAAGTATCGCGCGCACTACTGCAACCCAGCGGGTGCCAACTCGAACAATCGCTGCTTTCAGTGCAACAAATCGTTCCGCTCCGCAGATCGGCTCAAGTTTCACAAGCGCTTCCATGAGGGCGCTGTGCCTGGATACTGTGAGATTTGTCAGAAAACATTCCCCGATGAGGTGAAGCTGTACAAGCACACCATGTACTTGCACTCGCAGAACAAGGGACATTGCTGCGAAGAGTGCGGAAAAGTGTTCAGATCAGTTAGCTCATTGAGATACCACCAGCGGTCACATCAGGGCGAAACTGTCATGAAGCCGTTCACTTGCGAACAGTGTGGCAAGTGTTTCATCCGAAAAAGTATGCTACGTAATCACATGCTTGCAACACACAAGAATCTCAGCCAAGAGGGCACCTGCTTCACTTGTAAAATTTGCTTTGAAGCTTTTCCATCGACCGACCACGCCGTAGCACACATGGACATACATCATTCAGCCGAATGCCATGGTGAAAGCACCTACAGCTTCGAGATGCATACTGTGACACGACTGTATATTTGCGAATATTGTGAACGTTGCTTCACGAATGCGGCTACTCTGAACGCACATAGAGAACGGCACCCGGTCGACACACCCTACCAGTGCAAAATGTGCGACTCGTCATTCGCTGCTCACGACAAACTCATCGAACACAAGCCGATGCATTTCGACTACGTCGACAAGGCGGCTCAAGACTACAGCCAGGACTTCAATATACCCACTGTTTACATGTGCGAGTTTTGTGAGAGATGCTTTTTGAATTTCACCAAGCTGTCGGAACACTTGACGGTGCACTATGGAGACAAGCCGTACCAATGCAGGTTCTGTGATGAGAAGTTCAGGACGTCGGAGGAAGCTGGAGAGCATAGGATGAAGCACGACCAGTCAGCGGCACCCGTTGATGATTTCGATTACTACAGGCCGTACGAGTGTCACTACTGCAGGAAGTCATTTGCTATTGAAGACGCGCTGATCAAGCACATACGCATGCACACCGGCGAGAAGCCGTTCATCTGTGACGTTTGTGGCAAGGGCTTCTCGCAGAGCTCGGGCCTGTACACGCATCAGAAAGTGCACTCGGACGAGCGGCCGTACAGCTGCACGCACTGCCCGCGCACGTTCAAGATCAAGGGCGACCGCGACGTGCACGTGCGCAAGCACTCGGGCGACCGGCCCTACACGTGCGACTTCTGCGGCAAGGCGTTCATGACGCAGCACGTGTACAGCCAGCACCGCAAGATACACACCGGCGAGCGGCCCTACCGCTGCGACGTGTGTGGCATCACGTTCCGGCGATCGCACGTGCTCACCGTGCACAAGCGCATACACACCGGCGAGAAACCGAATGTGTGCGACATCTGCGGCAAACGCTACCGGCAGAAGGGAGACATGCTCAAGCATCGCCGTGTGCAGCACGGTGTCGCCAACGTCAAGGTATCCAGCGTCGTGTCATTCTCCACCGTTGTCGACAATAATTAA
- Protein Sequence
- MVLTSGEDDNVKLVLKNVVGEMVTMVVQSDETFQELQERVLLETGITLDIHDFTIQGKNISNEDIVTDYFANAQNDSVEEKPIITEDTKCAVPGCSNTKLNCPDKAFFQFPLEEVRCHQWALYCQKLSEQSGKHRIQLNMSSAICADHFRRDQFVKNTTTLLKRTAVPCIRPELPPGCDANTPRRKSLALSLSPSISLKSDKIFEDLFSNNLSTLAPGSSVLCRLCANPSPDMLFIFDDIGYKLSILEKINNCLPVVVRNTDPLPKQICRLCYEKLTSFNDMIESSLKAESKLKSLVKDNHFQLDETQNSDAEKTGEGEEAANNTEENIEEERNFSISSEKNEKNKHYCCPLCSCGKMVLKSGIYRARTPACTKQEATDGEAEAEEGGEPRSEVEEENEEASSEQKAFWNGQALPELEMESLYPDCIVGMDLDAIPEESWESETSFKQEQTVSNNKNDIYCRLCKMEFTNINAVLEHSHTHADDDSFPCGFCDSYFPTRSELEQHFQEHRIMKKKIVSSDVYERGQMFACDLCGAPFKTEAKYRAHYCNPAGANSNNRCFQCNKSFRSADRLKFHKRFHEGAVPGYCEICQKTFPDEVKLYKHTMYLHSQNKGHCCEECGKVFRSVSSLRYHQRSHQGETVMKPFTCEQCGKCFIRKSMLRNHMLATHKNLSQEGTCFTCKICFEAFPSTDHAVAHMDIHHSAECHGESTYSFEMHTVTRLYICEYCERCFTNAATLNAHRERHPVDTPYQCKMCDSSFAAHDKLIEHKPMHFDYVDKAAQDYSQDFNIPTVYMCEFCERCFLNFTKLSEHLTVHYGDKPYQCRFCDEKFRTSEEAGEHRMKHDQSAAPVDDFDYYRPYECHYCRKSFAIEDALIKHIRMHTGEKPFICDVCGKGFSQSSGLYTHQKVHSDERPYSCTHCPRTFKIKGDRDVHVRKHSGDRPYTCDFCGKAFMTQHVYSQHRKIHTGERPYRCDVCGITFRRSHVLTVHKRIHTGEKPNVCDICGKRYRQKGDMLKHRRVQHGVANVKVSSVVSFSTVVDNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00365991; iTF_01353996;
- 90% Identity
- iTF_01353996;
- 80% Identity
- -