Lstr006462.1
Basic Information
- Insect
- Laodelphax striatellus
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_014465815.1
- Location
- CM025334.1:7152827-7174171[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 6.5e-05 3 8.4 0.2 158 202 268 312 207 349 0.87 2 6 0.24 1.1e+04 -3.3 8.3 33 94 368 432 362 440 0.58 3 6 5.8e-19 2.7e-14 54.5 12.8 1 42 532 573 532 579 0.94 4 6 6.9e-24 3.2e-19 70.7 5.8 89 138 579 628 576 630 0.96 5 6 1.1e-33 5.3e-29 102.8 0.8 176 300 627 766 626 766 0.84 6 6 0.041 1.9e+03 -0.8 9.5 6 41 831 866 828 873 0.78
Sequence Information
- Coding Sequence
- ATGGAAAACATTAACAGTAGTGCAGTAGTGACTTACAACAAAAATTTCAATGATGGACAATTTTTTCTGCCCTCCAACAATCAAGTCAATGTCATCAACAGGAACAGTGATTTAAAAAATGGCTACCATGATGAAATCAAAGCCAAAAGCGGAGTGAATTTGTGTTGCATTGCGGTGAAAAATGGTGATAAAGTTGGCGCTGATGTTAAGAGCGCCAAAGTTTCCAATGGCATTGAACCAAAGTATGTCTCTATAATTGACGTGAACTCATCACCAGATCTTGTGACTGTTGATAGTAGTGTGAGTGGATGCTTTAATAGTGTTTATACAAATGGGGACAGTGTTTTGAAAAGAGCTCAAATACAAGATTTTGGAAATGCAGAATCTGAAGACAGTTTAGGGGTAGAACATTGTTTGGGTTCAAAAGAAAGAGGAGGACTTGTGGGTGTGCAACAGTTCTTGCTTGCAGAAAATGGTGCCAAAGTCTTGAATTCAGGTCCAAACTTGCAGGAATCTCAAGGATATTCAGGATCAGAAAGTATTCTGGTCACAGAATCAGGATGTAATGGAATCGGATTTGGCTCCAAAGATGTTTTGGGCTCACAGCATTTGCTGAAGGCAGAAAGTGATCATCAGAAATTGCATCAAACTAATTCGGGAACATCTGATGAAGACACATCCTTCAACCAGAAATTTTCCAACCATATGAATAGTTTGAGTTCATCTTCTGGTTATGAAACCGATCCTAATGTATCAATTGTTGAAGTGAATACGTCTGCCACAGATGAAATAATGAAGCCGGCAACCGACTCAGTTAAAGTATCTAGGTATGAGGTTGAGGATAGGGATTTAGTTATAAAGAAAGAAGGGTTGTTAATGGCAGATGATGATGAGGATGAAGAAGATGAGGATGATGAATCATCTCAAACAAAATCTTCAAGAAATGATGGTGACTCATCCAAAACTAATGGAAATTTGGGTAGGAATGGCAATGCTGTGTCCAAAACCAATGGAAGATCTCAAAGTCATGATGATGAAGATGTTTCCAAAATAAATGAAGATTCATTGATGGATGATGGTGATATTGATGAAGCAATGTTGAAAAGCGACAAAGATTTATCAAAAGAAGATGAGGATGACAAGTCCAAGAGTAAAGTGAGTTCCTTGGGGAGTGCTGATGAAGAAGAATCCAAAAGTACAGGAAAGTCTGCAGGAAAAACAAGAGGCAGTAGTGAAGAAAGTATGGATGTTGATGAGGAATCAAGCAGAAGTGCTGCAAATGATGAGGTTGCAAATTCTGCAAGAAATTTGGATGCGGCAAGCTCTGCCACAAGAAATTCTAATGAAGCAAGCTCTGCCATTAAAGGCAGAAATGGAGTAGATCTCGATGATGATGAAGATGATGATTCCTGTTTGGATGGTTATTCTTCCAATGACATTGATGAAGATGATGTAGATGCCAAAAAGGACAGTCGGCAACCAAATAAGCCGCAACTGAAAAGGACGCGCAGTAATGCTGGAGCAACAGATTACTGGAAAGAGGAGGGGGAAGATGGATGTATTGTGGAGTTTCTGGACAAAAGTAACGACTGTGCTGAAGCTCGTCTGGCGGCAAAGCGGCAGGCTCGAGCGGAAGCGCGGGAAATTCGAATGCGCGAACTGGAGCGCCAGCAGCGGGAGGCCGAGGAAACAGCTGACAAGGTCTACGACATCTACAGCACGCCAGTTTTTGATGAACACGAGCTGAAAGAGGTGGAAGACAAGTTCAGGAAGGCGATGATAGCCAATGCTCAGTTGGACAATGAGAAAGCTGCGGCGGCATATCAAGTGGAATTGCTCAAGGACCGGCTGGAAGAAATGGACGAAAATCATTCTCAGTTGAACGAACAAGGCCTGGTGATTGTTGGCGGAGAGTATTCGTCGAGCGGTGAGGATGACGAACAGACTGATTGTGGCAAGCAGCAGCGCAAGCCGCCCAAACGCGCCCTGGTCTCCGCGCAGGTGGCCGAGGTACTGGAGAAGGTTGGCAGTGGCTCGCTGGACGTACGACTGAAAAAGTTCGTTGAACAGCGAAACGAACTGCTGGACGAGTTGAACCGAGTCAAACTCGAACTGGAGGAGGAGCGCACTCGTAACCGGGGTGGCGGCGGCGCTAACCGGCGATTAGCTAACGGGCCGTTAACGGCTGACGGGCCGTGCTCGGGTCTGGACGATTTGGAGGAGGTGCAACGCGAGGCGAATAAGTTGATCAGCGATTACAAGTTTCGATTGCAGAAAGCTGATCAGGATAACTCTACGCTGCAGGCTACGGTGGCAAGACTCGAAAGCCAGGTGGTGAGGTACAAGACAGCTGCAGAAGTAGCGGAAAAAGTTGAAGATGACCTGAAAGCTGAGAAACGGAAACTTCAAAGAGAGTGTGGCCATTGGTTTGAATGGGTCCACAGCAGTGTATTGGAACATTTTCTTTGTCCCGTTACCGCCATACTTTTGGGGGAGAAGAGGAATAGGAAGAAGAAGGAGAGGGAGAAAAGGATGAAGGAAAAGAAGAAGAAGATGGAGGAGCAGGAGGAGGAAAAGAAGAAGAAGAGAAAGAAGAAAAGTCTTGTCAATAAGGGTTTTCTAAAGCCGGGACATTATTAA
- Protein Sequence
- MENINSSAVVTYNKNFNDGQFFLPSNNQVNVINRNSDLKNGYHDEIKAKSGVNLCCIAVKNGDKVGADVKSAKVSNGIEPKYVSIIDVNSSPDLVTVDSSVSGCFNSVYTNGDSVLKRAQIQDFGNAESEDSLGVEHCLGSKERGGLVGVQQFLLAENGAKVLNSGPNLQESQGYSGSESILVTESGCNGIGFGSKDVLGSQHLLKAESDHQKLHQTNSGTSDEDTSFNQKFSNHMNSLSSSSGYETDPNVSIVEVNTSATDEIMKPATDSVKVSRYEVEDRDLVIKKEGLLMADDDEDEEDEDDESSQTKSSRNDGDSSKTNGNLGRNGNAVSKTNGRSQSHDDEDVSKINEDSLMDDGDIDEAMLKSDKDLSKEDEDDKSKSKVSSLGSADEEESKSTGKSAGKTRGSSEESMDVDEESSRSAANDEVANSARNLDAASSATRNSNEASSAIKGRNGVDLDDDEDDDSCLDGYSSNDIDEDDVDAKKDSRQPNKPQLKRTRSNAGATDYWKEEGEDGCIVEFLDKSNDCAEARLAAKRQARAEAREIRMRELERQQREAEETADKVYDIYSTPVFDEHELKEVEDKFRKAMIANAQLDNEKAAAAYQVELLKDRLEEMDENHSQLNEQGLVIVGGEYSSSGEDDEQTDCGKQQRKPPKRALVSAQVAEVLEKVGSGSLDVRLKKFVEQRNELLDELNRVKLELEEERTRNRGGGGANRRLANGPLTADGPCSGLDDLEEVQREANKLISDYKFRLQKADQDNSTLQATVARLESQVVRYKTAAEVAEKVEDDLKAEKRKLQRECGHWFEWVHSSVLEHFLCPVTAILLGEKRNRKKKEREKRMKEKKKKMEEQEEEKKKKRKKKSLVNKGFLKPGHY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -