Lsuf011429.2
Basic Information
- Insect
- Lampropteryx suffumata
- Gene Symbol
- -
- Assembly
- GCA_948098915.1
- Location
- OX402570.1:11239494-11249731[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.26 2.9e+03 -0.6 0.1 26 52 198 224 175 226 0.80 2 11 0.48 5.4e+03 -1.5 0.1 22 32 222 232 208 246 0.65 3 11 0.0014 16 6.6 0.0 21 47 332 358 324 365 0.84 4 11 0.05 5.8e+02 1.6 0.1 21 44 360 383 355 386 0.81 5 11 0.12 1.4e+03 0.4 0.0 19 46 420 447 407 452 0.86 6 11 0.12 1.3e+03 0.5 0.0 18 45 474 502 466 506 0.79 7 11 0.0021 24 6.1 0.0 21 45 506 530 495 539 0.88 8 11 0.034 3.9e+02 2.2 0.0 23 48 536 561 532 565 0.81 9 11 0.00024 2.7 9.1 0.0 21 45 562 586 554 594 0.88 10 11 0.5 5.7e+03 -1.6 0.1 26 34 595 603 587 617 0.76 11 11 0.0055 63 4.7 0.1 21 43 618 640 610 645 0.87
Sequence Information
- Coding Sequence
- ATGTCTGTCTCGCCTGTATGCAGGGTGTGTTTGCTGGATAATGTCAGAATGAAATTCATTGCATGTTCACAACTGCAAGAAATATTTGAATTACTGGCAAATAATAAACTTATAACTGAAGATGGAAGACCAGACACAGTATGCTATGTTTGTTTCTCTCAGCTGCAGAGATGCCATAAATTCATGCAAGTGTCTCGGAAAGCTGAAAATATCCTCACAGAACTGTTCTTCAAAGGCTTGCAGGTAACAGAAAGTTCAGTTAAAATGCTCAACGGTGGCAACCAATTGAATATTATATCACGAACAATGCAGCCCGTTTCATTATTCAATTTCTCTTCTGATGAAGAGTATAGTTCAAGGAGTGTGAAGCAAGAATGTCATTCTTCAGAAAGCTATCCATTTGAATTCGAGAATGAGTTTATCCATGAAGATATCAAAACGGATTTTGTTGAATATGTCGAAACGCCTGCCTCAAAAGAAATAAAAGAAGAAACTACTGGGCATCATGAGAAACACAACCCACATCCTAGCAATATAAAGAAGGAACAAATAATGTCAGATCCTTCATGTAGTGCTGAAAATGTTATATTTCAATGCACTGTGTGTGGAAAGTCATACTCAAATAGATACGCTTTGAAACGCCATATGAAAATTCACTCCGGAGACAAGCCTTACGTTTGCAGAATTTGTAGTAAATCCTTTCCAGAAAACAGTGACATGATAAAGCATTTAAAAACTCACGGCCGTGACAAGTCATTTGCCTGTCATATGTGTGATAAGAAATTTAATGAGAATTATCGATTGAAAAGCCACATGAAACTTCACACAGGAGACTTAACATGCGATATTTGCGATGAGCCATTTCCTGGAATCAATGAGTTGGAATCTCATAATAATAGAATGCATGAAGGTGTTAAGGCGTTTGCTTGTGAAGTTTGCAGTAAAAGATTTACTTTTAAATCTAAATTGGATAGGCATGTCCGAACCCACACAGATGAAAAACCATATACCTGTGATTTGTGTGATAAGTCTTTTGCTGATAGTGGAAACCTAAAAACTCATAGAAGAGTTCACACAGGTGAAAAGCCATATTCGTGTGAAATATGCCACAAGCAGTTTACGACTAATAACACATTAAAAACTCACATGGCAGGACACTCGGGTGAAAAGTCATTTCCATGCGACAAATGCGATAAATCATTCTCCGTTGTAGAATATTTGAAACGACACATGAAAATTCACGCAGAGAATAGAAACTCTGACTCCTCGTTTATGTCTACATGCGACCGGTGTGGCAAGATGTTTGTTGATAAATGTGCTCTGCGGAAACACATGAAAGTACATACAGGAGTAAAGCTATTTGTTTGTGATATGTGTGATAAGAGATTTGCAGCAAAATCTAAACTGAAACGACACGTCAGAAGCCACACAGACGAGAAACCGTATCCTTGTAATTTATGTGATAAATCATTCGCCGAAACCGGCAGCTTAAAGACCCATTTGAGAGTTCACACCGGAGAAAAACCTTATTCGTGTGACGCGTGTGGTAAAAGTTTCGCTCAATCTAATTCTTTAAAGAAGCACCTCACGACACATACAGGAGAACGCCAGTTTGCCTGTGTTGTTTGTTACAAAAGTTTTGCTGTAAAAAATAACTTGACAGACCACATGAGAATTCACAGTGGCGAAAAGCCATATATTTGCAACATTTGTAGTCGAGGTTTCGCTCAGTCGAACTCGCTGAAGAAGCATCTCACAACTCACACAGGCGTGAAACAGTTTTCTTGCGTCATCTGCTATAAAACTTTTGCAGCCAAAAACAGCTGGAAAATTCACATGAGAGTACATAGTGGGGAAAAGCCATATGCTTGCAACATATGTAGTAAATCATTTGTAGACAGCAGCACCTTGAATAGACATAAGAGAACCCATACAGGGGTTAACCCATACTCATGCATAGAATGCAATAAGTCATTTAGTAGAAAAGCTTATTTACAAAAACATGTGGCGTTTTGCAAACGTCAATAG
- Protein Sequence
- MSVSPVCRVCLLDNVRMKFIACSQLQEIFELLANNKLITEDGRPDTVCYVCFSQLQRCHKFMQVSRKAENILTELFFKGLQVTESSVKMLNGGNQLNIISRTMQPVSLFNFSSDEEYSSRSVKQECHSSESYPFEFENEFIHEDIKTDFVEYVETPASKEIKEETTGHHEKHNPHPSNIKKEQIMSDPSCSAENVIFQCTVCGKSYSNRYALKRHMKIHSGDKPYVCRICSKSFPENSDMIKHLKTHGRDKSFACHMCDKKFNENYRLKSHMKLHTGDLTCDICDEPFPGINELESHNNRMHEGVKAFACEVCSKRFTFKSKLDRHVRTHTDEKPYTCDLCDKSFADSGNLKTHRRVHTGEKPYSCEICHKQFTTNNTLKTHMAGHSGEKSFPCDKCDKSFSVVEYLKRHMKIHAENRNSDSSFMSTCDRCGKMFVDKCALRKHMKVHTGVKLFVCDMCDKRFAAKSKLKRHVRSHTDEKPYPCNLCDKSFAETGSLKTHLRVHTGEKPYSCDACGKSFAQSNSLKKHLTTHTGERQFACVVCYKSFAVKNNLTDHMRIHSGEKPYICNICSRGFAQSNSLKKHLTTHTGVKQFSCVICYKTFAAKNSWKIHMRVHSGEKPYACNICSKSFVDSSTLNRHKRTHTGVNPYSCIECNKSFSRKAYLQKHVAFCKRQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00856865;
- 90% Identity
- iTF_00856865;
- 80% Identity
- iTF_00856865;