Lsuf001404.1
Basic Information
- Insect
- Lampropteryx suffumata
- Gene Symbol
- -
- Assembly
- GCA_948098915.1
- Location
- OX402574.1:4686884-4690611[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.061 5.3 8.6 0.1 2 23 86 108 85 108 0.92 2 23 2 1.8e+02 3.8 0.8 3 23 135 155 133 155 0.90 3 23 0.38 33 6.1 1.0 1 23 159 182 159 182 0.90 4 23 0.074 6.3 8.4 1.7 1 23 214 237 214 237 0.92 5 23 0.00017 0.014 16.7 2.4 1 23 244 267 244 267 0.97 6 23 0.00058 0.05 15.0 1.8 1 23 272 294 272 294 0.95 7 23 0.00069 0.059 14.7 0.3 1 23 300 322 300 322 0.93 8 23 0.22 19 6.8 2.7 1 14 328 341 328 343 0.92 9 23 1.1 95 4.7 0.1 2 23 404 426 403 426 0.93 10 23 0.011 0.91 11.0 0.7 1 23 452 474 452 474 0.97 11 23 0.0053 0.46 11.9 0.3 1 23 478 501 478 501 0.97 12 23 0.0027 0.23 12.9 0.7 1 21 505 525 505 526 0.96 13 23 0.009 0.78 11.2 0.7 3 23 548 569 547 569 0.96 14 23 0.29 25 6.5 0.1 2 23 594 616 593 616 0.93 15 23 0.27 23 6.6 3.0 3 23 641 661 640 661 0.98 16 23 0.0008 0.069 14.5 1.5 1 21 665 685 665 686 0.96 17 23 0.066 5.7 8.5 0.2 1 23 727 750 727 750 0.93 18 23 0.25 21 6.7 0.2 2 23 776 798 775 798 0.95 19 23 0.0078 0.67 11.4 0.5 2 23 822 843 821 843 0.94 20 23 0.0031 0.27 12.7 0.0 1 23 847 870 847 870 0.97 21 23 0.41 36 6.0 0.5 1 23 874 897 874 897 0.97 22 23 0.00025 0.021 16.1 3.0 1 23 936 959 936 959 0.97 23 23 0.027 2.3 9.7 0.5 1 23 969 992 969 992 0.90
Sequence Information
- Coding Sequence
- ATGGGTTTTTTTTCTTTTCTAGCTCGCGATATGGCGAAACGGAATGCTGAAGTTGTGTTGCAGTATTCCACACTGTATCCATTCAGGTTGCGCGGCAAAACCTTGATGTGCGTTTACTGCTGCGACGAAATTGAAGATCCGGACGAGTTCAGATGTCATATGGATGAGACACATAAAACGGTTGATCTTTCGATAGCATTTGCGCATACTAAGTGTAGAGATAGAGACTATCTGAAAGTCGACTGTCTTAATTTGAAATGCAGATTGTGTAATAAACCTTTCGATACAATGGCTGAGGTTGCTCAACATCTTATTGAGCGTCACGTTAGCAAAATCAAAGACATGGACTTGAACTATGAAATAGGATTGCACCCGTATAGACTAGTTAAAGACAAATTGTTCTGCCTTGTGTGCAATATGAAACAGCCTACTATAACTAAGCTCACAAGACATATGTCTTCACATTATGCTGACTACTCATGTAATATATGCGAGAAAAACTATTTGAACGTAGAAAGTTTAAGGTACCACGAAAAGTTTAGCCATTCCCAAAAACTCATTTGTAGGAAATGTATGATGGAGTTCTCCACAACAGAAGAAAGAACAGAGCACTTGAAAAACTCATCAAAGTGCTGGGGGTTTGCTTGCGTCCATTGCAAAGAAAGATTCTCTTCATGGGAACGCAAGCAAAACCATTTGGTCAGTCAACATAACATGCGGGCCATGACGTACCCGTGTTCGGACTGTGGGATTGTATTCAAATCGAGAGTTAGTTTCTACCATCATTATAATAAAACGCACTCTGACTTTGCGCACATATGCTCGCATTGCGGAAAAAAGTTTGGAAATAAAGGATTGCTTGATGATCACCTGGTTTCTCATACCAATGAAAAGCACTTTCGGTGTGCTGTTTGTTCGAAAGCTTTCTCTAGAGTTAAGGGCTTACGAGATCATATGTGGACACACAACGACAAAAAGAGATACCCTTGCACTTTTTGCGATAGGAAATTTAGTCAGAAATATTCGACACTGTACCCGTTCAGATTGCGCGGCAAAATCTTGATCTGCGTTTACTGCTGCGACGAATTCGAAGATCCAGATGTGTATCGTCAGCATATGGATGCAACGCACAAGAAAGCAATTCTATTCACTGCATTTGCACATACTGGCAGAAACAGAGATTACCTGAAGGTTGACTGCGTTAATCTTAAATGCAGACTATGCGACGCTCCCTTTGGAACGGTTGTTGAAATAGCGAAACATCTTAAAGATACCCACATAAATGAAGACATCCAGCAGATGGACTTGTGCTACGAAGTTGGCTTGCATCCGTATCGTTTAGCTAACAACAAGTTCTTTTGTGTTATATGTAATGTGAAACTGCCATCATTGACAAAACTTCGCAGACACATGTCCTCGCATTATGCAGATTATGTTTGCGATGTTTGCGGTAGAAGCTACTTGAAAGTTGATAATTTGCAATATCACGTCAAGTCCACGCATTCGGGACAATACCCTTGTAGGAAATGCTGGAAAGTTTTCCCAACAAAGGAAGAAAAGAAGCAACATAGGCGTAATGCCGAACTGATTCTCAAACACTCCACTGCATATCCATTTAAAACTCGTTTCAGTCAAATTCTATGCGCCTTTTGCCACGAAGAGTACAACACTTTGTCAGAATTACGATATCACATGTCAGTTGATCACGTCAATTCAGATTATAGCAATGTTTTCTATAGAATAAACGATAATTTAATTAAAGTTGACATAACAGACTTAAAATGTAAAATATGCTCACTGGAAGTTCCTGATGTAGACACGTTGATGACTCATTTATCGCAGGGACATCAAAAACCTGTGAAATTCAATACGCGCTTCGGAGTACTACCGTACAAACAAAATTCTGAAAACCAGTGGCTATGTGTCTACTGTCACAGACATTACGCTGAGTTTGTTTCATTTAAACGTCATATAGGAACACATTTTATGCACTTCACTTGCGATAAATGTGGTACTACTTTTGTATCTGATCATGCATTGCGTGACCATCATCGCCAAGTGAAATGCTTTAGAACTGCTTACCATCCACGCAATGGCAAAATCATGAGATCCCGTGGTAATGCTGAAATTATTTTACAATGCTCTACCGCTTGCCCTTTTAGGACGTGGAAAAACAATTTCAATTGCGTGTTTTGTCGCATTCAGACAAATGACCCGAGCAGTTTACGAATGCACATGGCAGCTCGTCACGCTAATTATGACGTACAAGCCGCTTTTTATAAGAAACTAGGTAAAGACTTCCTTAGCGTAGATATAACAGATCTTCAATGTAAACTTTGCTTTGTGCCAGTAGCAACAATCGACGCTTTAACACACCACTTGAAAAATGACCATCAACAACCTTTAAACTTAGAGGCTCAACTAGGTTTGCTACCCTTCATATTAAGCGACGGCTCTATATGGAAATGTACAATCTGTCCGAATCAATTTAAAGATTTCATATCATTAAAAAAACACACAGCCGACCATTTTCAAAATTATGTTTGCGATGCATGCGGTGAAGGATTTATAACGGAGTCTGCGATGATAGCGCACACCAAAATACCACATGAAAATAAATATAGCTGCAGTCGATGCATCGCAACATTTTCCTCTTTGGATGAAAGAAATATCCACGTAAAGACACAACACACTTCAATGCCCTATATGTGCATATACTGCACTGAGAAGCCTCGGTTTGCTAATTGGGAATTGCGTAAGAAACATCTTATGGAAGTACACAACTATAGAACAGGAGCTGATAAATATGAATGCACCACCTGCCAAAAGACTTTCAAGACGAGGTCTGGAAAATTCAACCATATGGCGAGAACCCATAAAATAAAAAAGGACGCAGAACTAAATTATCCTTGTATTAGCTGTCCGAAAGCTTTTACAACCAAACTATTTTTAGACAAACACATGGCTAAAAAGCATTTTGATATATGA
- Protein Sequence
- MGFFSFLARDMAKRNAEVVLQYSTLYPFRLRGKTLMCVYCCDEIEDPDEFRCHMDETHKTVDLSIAFAHTKCRDRDYLKVDCLNLKCRLCNKPFDTMAEVAQHLIERHVSKIKDMDLNYEIGLHPYRLVKDKLFCLVCNMKQPTITKLTRHMSSHYADYSCNICEKNYLNVESLRYHEKFSHSQKLICRKCMMEFSTTEERTEHLKNSSKCWGFACVHCKERFSSWERKQNHLVSQHNMRAMTYPCSDCGIVFKSRVSFYHHYNKTHSDFAHICSHCGKKFGNKGLLDDHLVSHTNEKHFRCAVCSKAFSRVKGLRDHMWTHNDKKRYPCTFCDRKFSQKYSTLYPFRLRGKILICVYCCDEFEDPDVYRQHMDATHKKAILFTAFAHTGRNRDYLKVDCVNLKCRLCDAPFGTVVEIAKHLKDTHINEDIQQMDLCYEVGLHPYRLANNKFFCVICNVKLPSLTKLRRHMSSHYADYVCDVCGRSYLKVDNLQYHVKSTHSGQYPCRKCWKVFPTKEEKKQHRRNAELILKHSTAYPFKTRFSQILCAFCHEEYNTLSELRYHMSVDHVNSDYSNVFYRINDNLIKVDITDLKCKICSLEVPDVDTLMTHLSQGHQKPVKFNTRFGVLPYKQNSENQWLCVYCHRHYAEFVSFKRHIGTHFMHFTCDKCGTTFVSDHALRDHHRQVKCFRTAYHPRNGKIMRSRGNAEIILQCSTACPFRTWKNNFNCVFCRIQTNDPSSLRMHMAARHANYDVQAAFYKKLGKDFLSVDITDLQCKLCFVPVATIDALTHHLKNDHQQPLNLEAQLGLLPFILSDGSIWKCTICPNQFKDFISLKKHTADHFQNYVCDACGEGFITESAMIAHTKIPHENKYSCSRCIATFSSLDERNIHVKTQHTSMPYMCIYCTEKPRFANWELRKKHLMEVHNYRTGADKYECTTCQKTFKTRSGKFNHMARTHKIKKDAELNYPCISCPKAFTTKLFLDKHMAKKHFDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00377346;
- 90% Identity
- iTF_00377346;
- 80% Identity
- -