Lsuf026756.1
Basic Information
- Insect
- Lampropteryx suffumata
- Gene Symbol
- -
- Assembly
- GCA_948098915.1
- Location
- OX402569.1:1444970-1448101[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 8.9e-06 0.00077 20.7 5.4 1 23 307 330 307 330 0.97 2 17 9e-05 0.0077 17.5 3.5 1 23 336 359 336 359 0.97 3 17 9.9e-06 0.00085 20.5 4.0 1 23 365 388 365 388 0.96 4 17 0.00018 0.016 16.5 3.6 1 23 402 424 402 424 0.98 5 17 4.1e-08 3.6e-06 28.0 0.2 1 23 430 452 430 452 0.98 6 17 0.0014 0.12 13.8 1.4 1 23 458 481 458 481 0.96 7 17 0.00012 0.01 17.2 1.5 1 23 487 510 487 510 0.98 8 17 2.9e-06 0.00025 22.2 0.1 3 23 518 538 516 538 0.97 9 17 0.0075 0.65 11.5 3.4 6 23 548 565 546 565 0.96 10 17 0.26 23 6.6 9.0 1 23 570 592 570 592 0.95 11 17 0.15 13 7.4 1.5 3 23 600 620 599 620 0.95 12 17 4.6e-06 0.00039 21.6 1.2 1 23 626 648 626 648 0.98 13 17 4.2e-07 3.7e-05 24.8 0.8 1 23 654 676 654 676 0.98 14 17 0.00033 0.028 15.8 1.3 1 23 682 704 682 704 0.98 15 17 8.4e-07 7.2e-05 23.9 3.9 1 23 710 732 710 732 0.97 16 17 4.6e-05 0.0039 18.4 0.3 2 23 739 760 738 760 0.95 17 17 3.6e-06 0.00031 21.9 2.0 1 23 766 788 766 788 0.98
Sequence Information
- Coding Sequence
- ATGTTAAGAACAAACCGTAACTTGTCTGAGACTCCTGCACTCTGCATGTCTGAACATAATTATTCTAGCAACACAAACCCTCCAGCCGCTGAGGAGACAGAACTGGAATTTGTAATAGAAAAACTTGAAGATGATTTGTTTGACATGGAGGACACAGAACACCAAAACATATCAACAATTCATAATACACAGGCTGTTCAAAATTCAAGCAATGTAAGCATATCAGGGATTGATGATGATGAAGGTGATACAAAAGATAAACAAGAAATTGAAGAGTTTTATATACAAGAAGATGAATGGTTTCAAACTGCAGAAACAACACAAGATGTTGGGACTAAGGCTAACTTAAATAAAACGAAGCGTTCATCGGGAAGGGGTGATAAGACTCGTAACACAGCTGAGCGTCATAAGCAGACCCACACTAATCACCCATCTGATAATGATGTAGAGGATAATGGGAACAGTGGGTCTCACGATATGTCTATGCAATTAAGTGGTTACATGAGTAAAAAAAGCTGTGCATCAAAATATTACTATATGAGACATAGTGTGCGTGACATGTCTGATAATAATGATTTCTACATCTCTAGCGCTCTGGAGCCTAACGAGATAGAACAAGTCATTATGAAAGAGGAGATTAAGGAGGAAAATTTATTTGGAAATGAGGAGACAAAACCACTTAATTTGACATCTGTTACTACAAAATCCACGTCTATAAATAACTGTTCCAACTATGAAACACAAGAGACTGTGAAGGTAGAAGTAGTTATAAAAGATGAGCCGGTTATTAAATTTGAAGATGACTCCTTTGAATCTGAAGAGACAATACTTTGTAGAAATGAGATAAGTGCTAGCTTGAAAGCGAAGGAGGCGTCAGGGACGAGTGAGACATACGACATGGCTGTGCTAAGTGCGCAGTTCCATTGTGATATATGTGAGAAAAACTTTACCACAAATCACTACCTCAAGAAACATATGAATATGATTCATGATGGACAAAAGCCATTCTCCTGCAATAATTGCAACAAGAGATTCTCTTTTATACATCTATTAAATAACCACATGATGCGTGTTCATTCTGACGAAAAACCACATGCTTGCAACTTCTGTGATAAAGCCTTTAAACAGTCATGGCATTTAATGATGCACATGCGAATGCGGCATCCAGAAAATGTAACTAAGAAAAGAAAACCGAAGCACACACACACATGCAATTTATGTTTAAAGTCATACTCTAAGAAAAGCAGTCTAATAGTCCACAAGAGAATGCACTCTGAAAAAAGACCTTATGATTGCAACATATGTGATAAGTCATTTAGTCAATATGCAGCTCTGAAAGCCCACATGAGAATACACTCCGCAGAAAAGATGTACAATTGTAGCCAATGTAACATGGCATTTCGTTTTCGAAAGAGTTTGTGGGCTCACAATAAGCGAGAGCATAATGTAGAGAAATTATACACTTGCAAGATATGTGTAAAAGAGTTTTATGGCATGAATAATTTGAAGGATCACATGAAAACAAAGCACAGTTTTGCGAAAATAGATGCCTGCGACATTTGTGATAAAGCCTATGATAATAAAGGAAGTTTGATAACCCACATGAGAAAACACTCTGGAAAAATGGCATATGCTTGCTTTTGTAGTGAAACATTTAGATTGAAATCTCATTTAATTAAGCACTTGAGAATACATTTCGGAAATCCACACTGTTGCACTCTATGTGACAAAAGATACGCTTTTAAACGATCATTAGACAAGCACATGTTCCATCACACTAGAGAGAAACCACACGGTTGCACCGTATGTGGTAAGGCATTTAGTGCATTACTGAGATTAAAGTGCCACATGCGACAACACAGTACAGATAAACCATTCTCTTGTGAATTGTGCGACAAGGTATTTTATAGTGAAGTCAATTTGAAGACCCACAAACGAATGCATATAGAGGAGAGGCTATACATCTGCGATATTTGCAAGAAAACATATAATAGAAAAGATCTTTTGAAAGCCCACATACAAACGCACGCTGGAATGAAGCCATACACTTGCAATATATGTGGGAAGGGATTCGCTAAAATAAAGTGTATGAAAGCCCACAGGCTTATACATACAGACCAAAAGCAACACATTTGCAAATTATGTGGAAAGAGATTTAGAGTAAAATCTTATTTGAAGTTGCACATGCGGACACACAACCGAGTTAAGACTCTTACCTGCGGGATATGTAATACTGCATACTATGACAAGAGGAATCTAGAAAGGCACATGCTTGATCACTCCGGAGACAAACCATACTCTTGCGATATCTGTTACAAGGAATTTAAAGATAAATCTGAATTAATCAGCCACCATCGAATTCACATCCTCACTAGGCAAAATACAATTGGCACAATTGGCATCTCGAAACCAACTTGTGAGTCAACCAATGCGAATAAACATTTGCTTGACCATAACTATTATCAGGTAAATTCGTAG
- Protein Sequence
- MLRTNRNLSETPALCMSEHNYSSNTNPPAAEETELEFVIEKLEDDLFDMEDTEHQNISTIHNTQAVQNSSNVSISGIDDDEGDTKDKQEIEEFYIQEDEWFQTAETTQDVGTKANLNKTKRSSGRGDKTRNTAERHKQTHTNHPSDNDVEDNGNSGSHDMSMQLSGYMSKKSCASKYYYMRHSVRDMSDNNDFYISSALEPNEIEQVIMKEEIKEENLFGNEETKPLNLTSVTTKSTSINNCSNYETQETVKVEVVIKDEPVIKFEDDSFESEETILCRNEISASLKAKEASGTSETYDMAVLSAQFHCDICEKNFTTNHYLKKHMNMIHDGQKPFSCNNCNKRFSFIHLLNNHMMRVHSDEKPHACNFCDKAFKQSWHLMMHMRMRHPENVTKKRKPKHTHTCNLCLKSYSKKSSLIVHKRMHSEKRPYDCNICDKSFSQYAALKAHMRIHSAEKMYNCSQCNMAFRFRKSLWAHNKREHNVEKLYTCKICVKEFYGMNNLKDHMKTKHSFAKIDACDICDKAYDNKGSLITHMRKHSGKMAYACFCSETFRLKSHLIKHLRIHFGNPHCCTLCDKRYAFKRSLDKHMFHHTREKPHGCTVCGKAFSALLRLKCHMRQHSTDKPFSCELCDKVFYSEVNLKTHKRMHIEERLYICDICKKTYNRKDLLKAHIQTHAGMKPYTCNICGKGFAKIKCMKAHRLIHTDQKQHICKLCGKRFRVKSYLKLHMRTHNRVKTLTCGICNTAYYDKRNLERHMLDHSGDKPYSCDICYKEFKDKSELISHHRIHILTRQNTIGTIGISKPTCESTNANKHLLDHNYYQVNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00856873;
- 90% Identity
- iTF_00856873;
- 80% Identity
- -