Basic Information

Gene Symbol
ct
Assembly
GCA_948098915.1
Location
OX402562.1:1488657-1506804[-]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 2.9e-27 5e-23 81.8 0.0 3 70 146 214 144 221 0.94
2 3 3.4e-32 5.8e-28 97.6 0.0 4 77 548 622 546 624 0.96
3 3 4.8e-31 8.3e-27 93.9 0.0 3 75 751 824 749 828 0.95

Sequence Information

Coding Sequence
ATGCTTCGCTCACTAGACCTGGGTCCGAGCGAGCGGTCGGAACGGTTCGAAAGGATCGAGCGAATCGAGCGCAAACCCGAGCGATCTCCGAGCGTGGCGCCCGTTCGCGAAGAGCGAAGCTCTGTTGAGCGCGAACGAAGTATCGAGCGAATCATCGAGCGAAGAGAACCAGGTCCAGAGGAGTGGCCGAGCACGCCCCCACTCAACAACAACACCACTCACCACAACAACAACGGGCCGACGCCGCTGCCACTGCCGCCGCCCAGTCCCTTCCGCTTCGACGACCACCGGCCCTACCGGTTTGCAGACGACATGGGACCCCTACCGCCCGGCGCTCTCGTCGGCCGACTAGGAGACTCTCTCATACCCAAAGGAGATCCTATGGAAGCCCGTCTCCAAGAGATGCTCAGATACAACATGGACAAATACGCGAACAGCAACCTAGACACGCTACACATCAGTCGAAGAGTGAGAGAGTTGTTGTCGGTTCACAATATCGGGCAGAGGCTGTTCGCAAAGTATGTCCTCGGGCTGTCGCAGGGGACTGTGTCAGAGCTGCTGTCCAAGCCGAAGCCGTGGGACAAACTGACGGAGAAGGGACGGGATTCCTACAGGAAGATGCACGCGTGGGCGTGTGATGAAGCCGCGGTGATGCTCCTCAAGTCTCTGATCCCTAAAAAAGTTGGTTCAAAAGACGGCAGCATTGGTCCGGGGGGTTTCGGGAGGTCCGATGGGGAAGGTGACGACAGATTGGCGCACATACTCAATGAGGCTTCCCATATGATGAAGACTCCAACAGGACCGCCACATAACGACGATTCTAGAAGCAATGAAGACTCTAGCTCACCTAGAACGCAATGTCAATCCCCCTTTTCGAAGGACTCAAGCCAAAACAGGAGGCTTAAGAAGTACGAGAACGATGACATTCCTCAGGAGAAGGTGGTTCGTATCTACCAGGAGGAGCTTGCCAAGATCATGACTAGGCGAGTGGAGGACATCCGTCACAACCGCGAAGGTTTTCCTGGTATGTTTCCCCCTTTTTTCAGCGGTGGTATGCCCCCACACATGGAGAGGCCGCCCGAAGACATCCGTATGGCTTTGGAAGCATACCACAGAGAACTCGCCAAAATCCAGCCTGGTGGCAACATTCCCAACCTCCACAATATGCCAGGAATGCCTCCTTTCCCCAACCTACTCGCCCTCCAACAGCAAGCGATGCAACAGGCCCAAAACCAGCACATCAACGGTTCTGGCGCGGTCCAAGATCTCTCCCTCCCCAAGGACAAAAACGCCAAAATGAATGGAATGACTGATAGTGATAAGGATAGATCGATGGATGCCGAGGAGGCGATCCGGCACGCGGGGAGCGCGTTCTCCCTCGTGCGACCCAAGCTGGAGCCCGGCCAGCAGTCGACCGGCTCGTCGGCGTCCAGCCCTCTAGGTAATGCTATATTACCGCCAGCAATCACCCCCAATGAGGACTTCAATAGCTCAGCCGCGGCTAGCCCGCTGCAACGGATGGCGTCCATCACCAATAGTCTAATCTCTCAGCCGAGCAACCCTCCGCATCACACGCCCGCCCAGAGGTCTATGAAGGCTGTGCTGCCGCCGATCACGCAGCAGCAATTCGACCTCTTCAACAACTTGAACACCGAAGACATCGTTCGGAGGGTCAAGGAAGCTTTGAGCCAGTATTCTATCAGTCAGAGGCTTTTCGGGGAGTCTGTTCTTGGGCTCTCGCAAGGGTCCGTGAGTGACCTGCTCGCGCGGCCGAAGCCGTGGCACATGCTGACGCAGAAGGGCCGGGAGCCTTTCATTAGAATGAAGATGTTCTTAGAAGACGACAACGCGGTCCATAAGCTGGTCGCGTCGCAGTACAAAATCGCACCGGAGAAACTGATGAGGACCGGAAACTACAGCGGAGCACCGATATGTCCGCCTATGAACAAACCGATGCCACCAACGCAGAAGATGATCTCAGATGCCACTTCTCTTCTCAACAAGATGCAGCACGAGCAACTCCTGGGTCCTGGTCATCTAGGCCACTTGGGGCACCAGCCTCCTCCGCTACTGCTCACACCACCAGGTTTCCCCCCGCACCATGCCGTAACCTTACCCCCTCAGCACCACGACAACAACAATAAGGAGAGAAAGCCCCAACCACCTCCTCAACCTCACCACCAGCCTCCAATCATGCGCAGTCTGCACCAACACATATCTCCCAGTGTCTACGAAATGGCTGCTCTAACGCAAGACCTGGATACGCAAACAATTACGACCAAAATAAAAGAGGCTTTGCTAGCAAATAACATTGGACAGAAGATATTCGGGGAAGCTGTACTTGGTCTGTCTCAAGGGTCGGTCAGTGAGTTGCTATCCAAGCCTAAACCCTGGCACATGTTGAGTATCAAAGGAAGAGAACCTTTCATCCGAATGCAGCTTTGGCTGAGCGATGCGCATAACATCGATCGTCTTCAAGCGTTAAAGAACGAAAGACGAGAGGCTAATAAACGACGGCGCTCCAGCGGTCCTGGACAAGACAACTCTTCAGACACTTCATCCAACGACACCTCAGAGTTCTACCACTCGAGCTCTCCCGGACCCACTACAGGGGCTCCCTGCGCTAAGAAACAGCGAGTGCTGTTCTCCGAGGAACAAAAAGAGGCATTGAGACTGGCGTTCGCTTTAGACCCTTACCCCAACATGCCAACGATAGAGTTCCTGGCTTCGGAGCTAGGGTTATCAACGAGAACGATAACCAACTGGTTCCACAACCACAGAATGCGGTTAAAGCAACAAGCGCCGCATGGTTTACCAGCCGAGCCTCCAGCCCGGGATCAATCCTCAGCCCCCTTCGACCCTGTCCAGTTCCGACTCCTCCTCAACCAGAGATTGCTGGAACTGCAGAAGGAGAGGATGGGCTTAGCGGGAGTTCCGCTCCCGTATCCTCCATATTTCGCGGCGAATTCAAACCTAGCCGCGCTGATCGGCCGAGGACTGATCCCTCCAGAAGTGACCAAAGACCAGAGCGGTGGCCTGGACCTGTCCATGCCGTTGAAACGAGAGCCTGACGGCGAAGATTACGAAGACGATGATGTCGAAAGTAATCTGGGATCCGAGGACTCGATGGACGACGAGTCAAAGACTGAGCCCAAAGCGACGTCGACGCCGCAGGGTCGCTCCAGCAGACGGAAACCCGCCGCGCCGCAGTGGGTCAACCCTGACTGGCAGGAGGACAAGCCTCGCAACCCTGACGAGGTCATAATCAACGGCGTCTGCGTGATGAGGAGCGATGACTTCAGACGCGAGGCTGAGGAGACGGTCCGCATAGAGCCCTCCCCGGTCCCGCGCGAGACGTCCCCCCCTCCCCCTTCCGCCGCCGCTTCGGCGCGCGCGCCGCACACCCCCCTTGCGCCGCACACACCGCACACGCCGGATGACGTCATCCCAGAAGACAAGATCAAGTCTGAAACGGATGACGACCGGTGGGAGTATTAG
Protein Sequence
MLRSLDLGPSERSERFERIERIERKPERSPSVAPVREERSSVERERSIERIIERREPGPEEWPSTPPLNNNTTHHNNNGPTPLPLPPPSPFRFDDHRPYRFADDMGPLPPGALVGRLGDSLIPKGDPMEARLQEMLRYNMDKYANSNLDTLHISRRVRELLSVHNIGQRLFAKYVLGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWACDEAAVMLLKSLIPKKVGSKDGSIGPGGFGRSDGEGDDRLAHILNEASHMMKTPTGPPHNDDSRSNEDSSSPRTQCQSPFSKDSSQNRRLKKYENDDIPQEKVVRIYQEELAKIMTRRVEDIRHNREGFPGMFPPFFSGGMPPHMERPPEDIRMALEAYHRELAKIQPGGNIPNLHNMPGMPPFPNLLALQQQAMQQAQNQHINGSGAVQDLSLPKDKNAKMNGMTDSDKDRSMDAEEAIRHAGSAFSLVRPKLEPGQQSTGSSASSPLGNAILPPAITPNEDFNSSAAASPLQRMASITNSLISQPSNPPHHTPAQRSMKAVLPPITQQQFDLFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDDNAVHKLVASQYKIAPEKLMRTGNYSGAPICPPMNKPMPPTQKMISDATSLLNKMQHEQLLGPGHLGHLGHQPPPLLLTPPGFPPHHAVTLPPQHHDNNNKERKPQPPPQPHHQPPIMRSLHQHISPSVYEMAALTQDLDTQTITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDAHNIDRLQALKNERREANKRRRSSGPGQDNSSDTSSNDTSEFYHSSSPGPTTGAPCAKKQRVLFSEEQKEALRLAFALDPYPNMPTIEFLASELGLSTRTITNWFHNHRMRLKQQAPHGLPAEPPARDQSSAPFDPVQFRLLLNQRLLELQKERMGLAGVPLPYPPYFAANSNLAALIGRGLIPPEVTKDQSGGLDLSMPLKREPDGEDYEDDDVESNLGSEDSMDDESKTEPKATSTPQGRSSRRKPAAPQWVNPDWQEDKPRNPDEVIINGVCVMRSDDFRREAEETVRIEPSPVPRETSPPPPSAAASARAPHTPLAPHTPHTPDDVIPEDKIKSETDDDRWEY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01338275;
90% Identity
iTF_00686128;
80% Identity
iTF_00856490;